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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0200700 |
| Transcript ID | LotjaGi2g1v0200700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mediator of RNA polymerase II transcription subunit 25; TAIR: AT1G25540.1 phytochrome and flowering time regulatory protein (PFT1); Swiss-Prot: sp|Q7XYY2|MED25_ARATH Mediator of RNA polymerase II transcription subunit 25; TrEMBL-Plants: tr|A0A151RZ52|A0A151RZ52_CAJCA Mediator of RNA polymerase II transcription subunit 25; Found in the gene: LotjaGi2g1v0200700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63826469..63831140) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAAGTATGTGTTCATTCAAACAATTGTGAGATTCGATTTGATTTTCTGTGTTGGTCAATGGTCATAATGCATATTGC ATAAATATGTGAATGTGAATGACATATATAGTGACAAATGAAACTTGAGCAAGGCTAGCTTGTTTATTGCCATTATTCTA TAGGGCTGACATTTCTTTCTTGCACTCCGCACAAGCATGAACTAGATTATTATTTTTTTAACTTAGTAATGAATCGGAGA GAAAAGGATATCCTAGAAAGAAAAACGTACTGTGGGAGTTCACTTAAATACTGCAAGCTCTATGGTGTGTGATAGCTATT CAGTTGGTACCATTTTCAAAAAAGAAGAAGCTATTCAGCTAGTACAAGTGTACAAGTGATATTATTGCTTCCCTATGTCA ACCATAATTCAGGAACTGCAAGCGGTTGCGGTTGGCAGAAAATTGGTGCATTTGTGAATCTGGGGGCATTCCATGTAGTC GGAAATCCATCAGCTCTCGCGGGTAGCTTTTGTATTGCATGTTGGTGGCAAGGTAAAAAAATGGTTCATTCTTTTGTAGC ATAGATTTAATATGGTTTTCCTATTAAATAGGGGCTGTGGCTGGGGATAATTTGTGCACTCATTGTTCTAGTATTTTCCC TAATGATCATTACTGTACGTATTGAATGGGAGAAGGAGGTGAAGCTTTCTATTTTTTTTTCTTTGAACTCTCCTTCATCT TTCATTTTTGTGATGCAAGTGCTGACATGTCTTTTTTTGGACACCACATTCAGGCAAATAAGGTCACAGGTAGAGTCTAT GGCGCAATAGCACCAGAGAACATAGTTTCATGGAGCTGCAATATCTCTGCAGCTACAGATAAATTTTTTTCCCGCCTAAA TGCATCTAAACAGTTAGTTTTCCATGTGTCAATTCTCTCTCTCAACTCCTCCTTTTTTCCTTTCCCGCTTACTTCTTACC TCTTCTATTTTTGATTTCATTCAAAATAATTTCCTTTCTTACTGGAAAAAATCCATGCTCAAGTTCACCCTCCTTTTTTT TTCTCAGCCAACCCTTCCCCATTTCTTCTTCCCCCTTCCTCACTTCCCTCTTTATCTCGGCGTTTTCCCCCCAACAGTTC AGCTTTTCTTAACTCGGACTCTTTTATCCATCATCACAATTCTCTCTTTATACTCTTCTTTCTCCTCCTTCAATAGCTCC CTCTCTCTTTGTGATGTATTTCCAGGTAGCACACTTTTTCTGAGATTGCTCTTTCTCCTCTTTCACTCCCTAGTCTTAAT GAATTGCTGTTTGTTGAATGAACAGGTTGTCAGTGACTTTACCCTTCCCTCAGGTTCTGACAAGATTTGTACTGGAAGTA CGGACGACATTAAAGGTTTGGGATCACCAAACTTGAAAGCTTGTTGGTATTTGTTTTTCATTTCGTTGATTAGTGGAAGT TTTGGTTTTAACATTAAACACCCAGAAATTGGGCTGTTAAGGTACATGTTAGAAATAATAATATAAAATTATTCATATGA CCCTTACCCAACAGCATGAGCAAACTTAGCCACGGAAGAAAAAATTCGAAAACACCAAACACTTCCCGTGGTGGCAACTC CACTGGCCAGGCCACCGTCATCATCACCTTTGTAAGACATATCCAAAGTGAAACGAGGATGATTCACTCTAAATGGTAAC CCCTTTCAAATTCAATGCACCTCCATCAACTTTCCATCTATGCAATCAATATAAATCATCCCTCAATTTCCCATCTATAA ATAACGCTTCTTCATATAATAACACCACTATATCATTCCTCACAACAAAACCCTAAAAATCCCTGTCTTCCCTTTTCTAC TATCGCGTTTTCTTCTTCCAATCCTCATGGCTGAGAAACAGCTTGTCGTGGCCGTCGAATGCACCGCTGCTATGGGCCCA TATTGGGACACCATTCTCAGGGATTACCTTGATAAGATCATCAGGTCTTTCGGTGGAAACGAGTCAATTGGGCAGAATCC TTCTGCTTCGAACGTTGAGTTTGCTCTAGTCACCTATAGTACTCATGGATGTTATTCTGGTTGCCTTGTGCAACGGACTG GCTGGACAAGAGACCCAAATGTTTTCTTCTCGTGGCTTTCAGCTGTACCCTTTACTGGTGGTGGTTTTAATGATGCTGCA ATTGCCGAAGGGCTTGCTGAAGCTCTGATGATGTTCCCAAATTCTCAAAGTGGAGGCCCGAATCAGCAGAATGTGGATAT GCATAAGCACTGTATCCTTGTAGCAGCAAGCAATCCTTATCCATTGAAGACACCAGTTTATATTCCGCGACCACAGAACC TAGAGAAGATTGAAACCATTGATTCAGATCCAGGGAACCGTTTATATGATGCTGAAGCTGTTGCGAAAGAATTTCCTCAG TTTTCTATTTCTCTGTCAGTCATCTGCCCTAGACAACTTCCCAAAGTTAAAGCCATCTACAATGCAGGAAAACGAACTAG TGGAGCAGCTGATCCACCTGTTGATGTTAAAACCCCTTATTTCCTTGTTTTAATATCTGAAGCTTTCAGAGAAGCCTCCA CTGCTTTGAGTCGTTCTGGGATCACAATCTTGCCTACAAAGCAAAGTCCTGTTAAAGTAGATGCAGTTTCTGTCACACCA GGTACATGGGCACCCCCAACTTCTTTGCCATCAGTTAATGGATCAATTGCAAACTGGAAACCTATATCTGTTAGGAATGT GGCTCCTGCAACTGTAAAAGTGGGGCCAGTTCCCGTAGCTTCCATGGTATCTGGACCTGCTTTTCCCCACAATTCATCAG TTCCGCGTGCTGCTAGTTCTAGTCCAGGTGTTCCAAATTTTCAGACATCCTCTCCATCTTCTGCTTCTCAAGATCTCATG ACAAGTACTGAAAATGGTCAGGATACAAAGCCTATGGCGTCAATGTTGCAGCCGCCCTTAGGTCCAGTGCATCCTGCACA AGTGAATGTGAACAGTTGGAATAATCTCTCTCAAGCACCTCAGGTGATGAACTCTGCTGCCTTAAGTGGTGGAACCTCTA TGGGACTTCCATCAATGGGTCAGACTCCTGTTGCCATGCACATGTCAAACATGATATCTAGTGGGATGGCATCTTCTGTA CCTGCGGCTCAAAATGCATTTTCATCTGGACCGTCAGGAATAATATCAATAACCAGTTCTGGACCTCTCATCGCTCCTGC ACAGGTTGGACAAAACTCAGCTCTCTGTTCATTAACTTTAGCTACTTCTAATTTGTCTTCAAGTTCAAATCTTGGGATTT CACAACCATTGAGTAACCTTCAAGGAGCTGTTAGTATGGGACAACGGGTCCCTGGAATGAGCCAAGGGAACATTTCAGGA GCCCAAGTGGTGCAAGGTAGAGTTACCATGAACCAAAATGTTGGTCCATCAGTTGTCTCTTCTGGAAATGGTACGATGAT TCCTACTCCTGGAATGTCTCTACAAGTACAATCAGGTGTGCAGCCACTTGGGAATAATGCAGCACCTAAGATGACTCTGC CACAGCAGACATCAGGTGGTATGCAGCCTACACAATCCAAATATATCAAGATCTGGGAGGGAAGCTTATGTGGGATAAAA CAAGAACAGCCAGTATTCATAACCAAACTGGAAGGTTATAGGAATGTTTCTGCCCCTGAGACAATTGCAGAAAACTGGCC CCCTGTAATGCAAATGGTTCGGCTTATACCTCAGGACCACATGAATGACGAGCATTTTGTAGGAAAGGCAGATTTTGTTG TTTTCCGGGTAATGAACCCTCATCGGTTTTTTGGTCAGCTGCAGGAAAAGAAGCTGTGTGCAGTTATTCCATTACCATCA CAGACATTGCTACTATCTATTTCTAACAAAGCCTCCCGCTTGATTGGGATGCTTTTACCGGGGATATTAGATATGGCTGC GTTGAAGCCACAACTGTCAAGTCAACAGCAGCAACAAATGCAACAGCCACAGCAGATGCAATCACAACAGCAGCAGCATC CTCACTTGCAGCAACAGAAGCTTCCACAACAGCAGCAGCAGCAGCAGCAACTTACCCAGCTCCAACAACAACAGCAGCAA TTACTTCCACAAGTCCAACATCAACAACTTTCCCAGCTGCAACAGCAACAACTCCCTCAACTTCAACAACAACAACTTTC GCTGCTGCAGCCGCAGCAACAGCTTCCGCAGTTGCAGCAACTACAGCATCAGCAACTTCCTCAGCAGCAAGAGATGGTTG GGGCAGGAATTGGTCAAGCCTATGTTCAAGGTCCTGGGCAGTCACAAATGGTTTATGAGGGACAGGTATCACAAGGAACA ACAGACATTGGTGGGGGTTCATGAGTTAGCTCAAATTTTTATATGGATTCCTCACAACTGACGCGGGTTATATTTATATT TTGGTTGATAGGTCAAAATCACAGATTAATGTTTTATGACCATATAATTTCTTGTTTTGTTTCTGATTCTGGGTGAGCTT GAATTCGGTATTTGTTTAGCTCTTTGTTAAGGCTATTGCGGCTTTCTCTGCTAGGTAGGGTCTTTGTTCTTTGTGGTTTT TGTTGTGGCTCGATGAGATCCTGTTTTGGTTGAACCTGTCGCCGCATTTTGTACCCATTTGGAGGTCTTAATAAAGATGT TGCTCGATCTTGGATTTTTGGTTTTGTTCAGG
CDS sequence (LotjaGi2g1v0200700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGAAACAGCTTGTCGTGGCCGTCGAATGCACCGCTGCTATGGGCCCATATTGGGACACCATTCTCAGGGATTA CCTTGATAAGATCATCAGGTCTTTCGGTGGAAACGAGTCAATTGGGCAGAATCCTTCTGCTTCGAACGTTGAGTTTGCTC TAGTCACCTATAGTACTCATGGATGTTATTCTGGTTGCCTTGTGCAACGGACTGGCTGGACAAGAGACCCAAATGTTTTC TTCTCGTGGCTTTCAGCTGTACCCTTTACTGGTGGTGGTTTTAATGATGCTGCAATTGCCGAAGGGCTTGCTGAAGCTCT GATGATGTTCCCAAATTCTCAAAGTGGAGGCCCGAATCAGCAGAATGTGGATATGCATAAGCACTGTATCCTTGTAGCAG CAAGCAATCCTTATCCATTGAAGACACCAGTTTATATTCCGCGACCACAGAACCTAGAGAAGATTGAAACCATTGATTCA GATCCAGGGAACCGTTTATATGATGCTGAAGCTGTTGCGAAAGAATTTCCTCAGTTTTCTATTTCTCTGTCAGTCATCTG CCCTAGACAACTTCCCAAAGTTAAAGCCATCTACAATGCAGGAAAACGAACTAGTGGAGCAGCTGATCCACCTGTTGATG TTAAAACCCCTTATTTCCTTGTTTTAATATCTGAAGCTTTCAGAGAAGCCTCCACTGCTTTGAGTCGTTCTGGGATCACA ATCTTGCCTACAAAGCAAAGTCCTGTTAAAGTAGATGCAGTTTCTGTCACACCAGGTACATGGGCACCCCCAACTTCTTT GCCATCAGTTAATGGATCAATTGCAAACTGGAAACCTATATCTGTTAGGAATGTGGCTCCTGCAACTGTAAAAGTGGGGC CAGTTCCCGTAGCTTCCATGGTATCTGGACCTGCTTTTCCCCACAATTCATCAGTTCCGCGTGCTGCTAGTTCTAGTCCA GGTGTTCCAAATTTTCAGACATCCTCTCCATCTTCTGCTTCTCAAGATCTCATGACAAGTACTGAAAATGGTCAGGATAC AAAGCCTATGGCGTCAATGTTGCAGCCGCCCTTAGGTCCAGTGCATCCTGCACAAGTGAATGTGAACAGTTGGAATAATC TCTCTCAAGCACCTCAGGTGATGAACTCTGCTGCCTTAAGTGGTGGAACCTCTATGGGACTTCCATCAATGGGTCAGACT CCTGTTGCCATGCACATGTCAAACATGATATCTAGTGGGATGGCATCTTCTGTACCTGCGGCTCAAAATGCATTTTCATC TGGACCGTCAGGAATAATATCAATAACCAGTTCTGGACCTCTCATCGCTCCTGCACAGGTTGGACAAAACTCAGCTCTCT GTTCATTAACTTTAGCTACTTCTAATTTGTCTTCAAGTTCAAATCTTGGGATTTCACAACCATTGAGTAACCTTCAAGGA GCTGTTAGTATGGGACAACGGGTCCCTGGAATGAGCCAAGGGAACATTTCAGGAGCCCAAGTGGTGCAAGGTAGAGTTAC CATGAACCAAAATGTTGGTCCATCAGTTGTCTCTTCTGGAAATGGTACGATGATTCCTACTCCTGGAATGTCTCTACAAG TACAATCAGGTGTGCAGCCACTTGGGAATAATGCAGCACCTAAGATGACTCTGCCACAGCAGACATCAGGTGGTATGCAG CCTACACAATCCAAATATATCAAGATCTGGGAGGGAAGCTTATGTGGGATAAAACAAGAACAGCCAGTATTCATAACCAA ACTGGAAGGTTATAGGAATGTTTCTGCCCCTGAGACAATTGCAGAAAACTGGCCCCCTGTAATGCAAATGGTTCGGCTTA TACCTCAGGACCACATGAATGACGAGCATTTTGTAGGAAAGGCAGATTTTGTTGTTTTCCGGGTAATGAACCCTCATCGG TTTTTTGGTCAGCTGCAGGAAAAGAAGCTGTGTGCAGTTATTCCATTACCATCACAGACATTGCTACTATCTATTTCTAA CAAAGCCTCCCGCTTGATTGGGATGCTTTTACCGGGGATATTAGATATGGCTGCGTTGAAGCCACAACTGTCAAGTCAAC AGCAGCAACAAATGCAACAGCCACAGCAGATGCAATCACAACAGCAGCAGCATCCTCACTTGCAGCAACAGAAGCTTCCA CAACAGCAGCAGCAGCAGCAGCAACTTACCCAGCTCCAACAACAACAGCAGCAATTACTTCCACAAGTCCAACATCAACA ACTTTCCCAGCTGCAACAGCAACAACTCCCTCAACTTCAACAACAACAACTTTCGCTGCTGCAGCCGCAGCAACAGCTTC CGCAGTTGCAGCAACTACAGCATCAGCAACTTCCTCAGCAGCAAGAGATGGTTGGGGCAGGAATTGGTCAAGCCTATGTT CAAGGTCCTGGGCAGTCACAAATGGTTTATGAGGGACAGGTATCACAAGGAACAACAGACATTGGTGGGGGTTCATGA
Protein sequence (LotjaGi2g1v0200700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEKQLVVAVECTAAMGPYWDTILRDYLDKIIRSFGGNESIGQNPSASNVEFALVTYSTHGCYSGCLVQRTGWTRDPNVF FSWLSAVPFTGGGFNDAAIAEGLAEALMMFPNSQSGGPNQQNVDMHKHCILVAASNPYPLKTPVYIPRPQNLEKIETIDS DPGNRLYDAEAVAKEFPQFSISLSVICPRQLPKVKAIYNAGKRTSGAADPPVDVKTPYFLVLISEAFREASTALSRSGIT ILPTKQSPVKVDAVSVTPGTWAPPTSLPSVNGSIANWKPISVRNVAPATVKVGPVPVASMVSGPAFPHNSSVPRAASSSP GVPNFQTSSPSSASQDLMTSTENGQDTKPMASMLQPPLGPVHPAQVNVNSWNNLSQAPQVMNSAALSGGTSMGLPSMGQT PVAMHMSNMISSGMASSVPAAQNAFSSGPSGIISITSSGPLIAPAQVGQNSALCSLTLATSNLSSSSNLGISQPLSNLQG AVSMGQRVPGMSQGNISGAQVVQGRVTMNQNVGPSVVSSGNGTMIPTPGMSLQVQSGVQPLGNNAAPKMTLPQQTSGGMQ PTQSKYIKIWEGSLCGIKQEQPVFITKLEGYRNVSAPETIAENWPPVMQMVRLIPQDHMNDEHFVGKADFVVFRVMNPHR FFGQLQEKKLCAVIPLPSQTLLLSISNKASRLIGMLLPGILDMAALKPQLSSQQQQQMQQPQQMQSQQQQHPHLQQQKLP QQQQQQQQLTQLQQQQQQLLPQVQHQQLSQLQQQQLPQLQQQQLSLLQPQQQLPQLQQLQHQQLPQQQEMVGAGIGQAYV QGPGQSQMVYEGQVSQGTTDIGGGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 737 | 737 | 5.7E-248 | – | |
| PANTHER | 1 | 737 | 737 | 5.7E-248 | – | |
| Pfam | 3 | 225 | 223 | 1.1E-45 | ||
| SUPERFAMILY | 5 | 137 | 133 | 1.25E-6 | ||
| MobiDBLite | 309 | 364 | 56 | - | – | |
| MobiDBLite | 311 | 350 | 40 | - | – | |
| MobiDBLite | 691 | 722 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0200700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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