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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0203900 |
| Transcript ID | LotjaGi2g1v0203900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF789 family protein; TAIR: AT4G16100.1 heat shock protein, putative (DUF789); Swiss-Prot: sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16; TrEMBL-Plants: tr|A0A0L9T396|A0A0L9T396_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0203900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:64567422..64573288) extracted from Lotus japonicus Gifu genome v1.2.
GTCCCCCACGAGGTACCAAATATTCTACGTATCCATTTTCTCTGTTCCTGTAACACCAGTGTGGTTGAAGAACAAGCTTT TGTTTCGTTCTATCTCTCTCTGTTCATTCCTTCAAATTTATTCACTTTCATCTGTACAATCTCATCATCACCTACTCTGT GATCATTTTCCATTGTGGAATTGGTCTTTGATCCTCTGTTTACCCAGAGCATTTTTTTCTTTTGTATTTTCGGAGTTTTA AGGTTCAGACACTCTGACCCAGTTCTAATTTTTCTGGGTTTTGTTCATCCTTCATTGGAAAAACGAAGAAAGACAAGATT TTGTAATCTGGGTCTTGTCTCTTTTTGTGTTTTTTTCTATCCTTCATTTTCTCGGTTACCAAACGAGGGGGAAGTAGTTA CTTCGTTGACTGGTTTGGAAAATGTTGGGGACTGCCTTGCAATTTGGGGATTTTCGTGGCGAGGATCGGTTTTACATTCC GGTGAAGGCAAGGAAGAACCAGAACCAGCGTAAGCAAGCTCAGAGAGATAAGAGTGTTGAAAATGAGGCTGCTTTGAAGA GCCAGCTTGTTGCTTCTGAGGATAGGAACCTCAATGAATCTTCGAATTCGTCGAACAAACCATCTTCTTGTCCTTCTGTA GGTTCTAGTAACATTGATAGGTTCCTGGAGTCAACAACACCTATAGTCCCAGTTCAGTATTTCTCTAAGGTTGATCTCAT CTGTCTTTTACACAATTATGCAAATGGATTATCTTTTTGACTGTTGTTTTTGGCTTTTTTCGACTTGTAGGGTATAACAA CCTCCATTTACTATTTGGTAAATTTTTTCAGTATATGTAACTGTTGATAGAGTATGACCTCTCATAGGAGAACAACTAAC TAACTTAGGACATAAGATTGATGAGTTTCACTCTCTTTCATCCATCCACCTTACTTACTTTAGGACTTGTTTTTATTATG TTGTGGATGCAGACAACAATGAGAGGTTGGAAGACTTGTGATGTGGAGTATCTATCTTACTTCTCCCTGAACGATCTCTG GGAATCATTTAGGGAATGGAGTGCATATGGAGCAGGCGTGCCTTTGCTACTTGATGGAAGAGAATCTGTTGTCCAATATT ATGTTCCTTATTTGTCGGCTATTCAACTATATGGTCAATCAGCTAAGAAGTCGAATGCTAAGCCAAGGTATTGGCATATT ATGTAGAGCATTTCTGTTTTATACATGCATAAGAATTTGTAACATTGACTTGAGACTGCATTGACCCCTGGAAACATGGT ACTGTTATGTTGAAAGATGAAACTTTTTTCTCTGCCTGCTATTGGTTTGTTTTGCATACTGGTTAAATTGATCTTATGAA GTATTGGATTATGTCAGCAGTTCTTGTTGACAGATGAAATCAATGAGAGAAATAAAGTATGTTTTAGTTTTTCACAAAAC ATATTTGTCATTGTCTTAGATATAGAAAATGTAGAATGGAAAGTAGTTTATGTGCAAACACTGGAATAACATGAAAGCGA AACTGATTATAATACAGTTAGATGGGCTTAAGGGAAACCTGGTTCTATAAAGCTTCTTCCAAGCGTGGTCTTGGAAGGGT TGAACTCAATTGTGGGTCATAGCGTTTTAATTCTGATTTTTAGATTCCGTTGGAACTTGGTTATGCAAAAACCTTTCATG GTCACTGCTACATTTTTTTTACACATAAAGTTCCTTGGATTTTGTTTGCTACATTTTCAATTCTCTTTCAATGCCTGGAG AAAGACTTTTCTTTAAGCTGGAAAGTGAATCAAATGGCTGTTGGGTGTGAGATACTTGCAGACAGGCAGCATTTGAGGGA ATGAGATTTCACTTATATTGAAATGGTGCATACTTGATTAATATATAATTTGTCTGCTTTTACTGCTTCATGGAACTCTT CTTATTGCACCGATGAGCTATGTATCGAAATGTTTGTTTTGTTTAATCTCTTTTCGACTTTCATTTGTTCCTCTTCATTC CATCCATTTTCACACTTATCACTTGCACTCGAAAATTAGAAAAGTTAATTTATCTTATTCATTGAATTGTCCTTTTATAC TACCAATTGGTTTGACTTTTGATGGACTATAGCAACATTTAATTTCAATGTATTGTGAATTTTTAGACCTTTTGTTATTT CTTTATTCTTTTTCTTTCTCTCTCTGGCTACTGATATCTGTATCTTGTCAATGTGGTTCTGTACATGTGAATTTACTTTT ACTATTTGTATAGTCTGTTATTAACCCATTGTTCATATTTCTATGCAATAATAAGTTTTAGTCAAGTGTGTTTTTGTGCT TTAGTTTGTAACGGTATCTCATTTTCTTTTGTCATCAGATACACTGGTGAAGATAGTGATGGTGATTACTACAGGGATTC AAGTAGCGATGCAAGTAGTGATAGTGAATTTGGAAAAAGGACTGAAAATTTTATAGCACAAAGTAGTCAATATCGACCAG GCAATGTTTCTTTTCAAATGAGCAGTTATCTGTACATGATAAACACTATGCGATGCAAGATGGGTTTTCTAGCGATGACA GTGAATCTGGGAACCCTCAAGATCTTCTTTTTGAGTATTTTGATCAAGATCCTCCTTATAGCCGTGAACCATTGGCTGAC AAGGCCAGTTCTGGTCTTAATTAATGTGTGGCTTATTTACCGTTATTTTGAACAATCCATCTTATATTTTATTATATTTG GACAGATACTAGATCTTGCACACCACTATCCTAGCCTCAAATCATTGAGAAGTTGTGATTTACTGCCATCCAGTTGGTTG TCTGTGGCATGGTGAGAATAACTTGATCTATTGCTTTACTGCTGATTTTATGTCTACTTACATTCTTCAATGGTGTCTTT TAGGTATCCTATATATCGAATACCCACAGGTCCAACATTAAAAGATTTAGATGCCTGCTTTCTTACTTACCATACTCCAT ACACCCTTGACAGGTATCATGGAACTTTAATCCTATGTTTGACCACTATGGCATTGTAATTTTTGCTTATCAATCAGTAC TCATTTGGCCTTGTTATTATTAGATGTACTCATGCATTTTACTCCTTTAGTGTATCTCAGGTACACAAAGTTGACCAAGA GAAGTATTATATTTTTCCATCAAATGGGAAACATGGGCATATTTTCCATTACATGTATTCACTAAACTGAGTTTTCCCCC TCTTTCTTTTTGAGTGACCTTCTTAAATTGTTTAGTGCTTGAACAACCAACCCTGACAATAAAACTATCATACTGTGCTC TATGTGCTCATTTGTGTGTTGAAATGAGCACAATGAATTAACATGGAATCACAAGTTATCTGATAGGAACGATCTCCTAT CAGCAGAAAGGCGAAATGTTCTGTATTACATGAACGGAAGTTACAGAAACAGAAGAACAAAGCATAAAGCTCCAAGCAGA GCAGTCCCTACCCAGTCCAAAGCCAAAAACAGAAAAGATACCAGATGGCTCCGACTACGTGAATCCCATCCCTATTCCTT CAACTTCGTATCATGTGGCTATGTGATAGAACCAGAACCAAATTAGGTCAAGGGAGAGGGATAAACAGAGAAAGAAAACT GAGTAACACACTCTTATTCAGAAATTGAGAAAAAAAGAGTTACAACACTAGCTGTTCGAGAGGCTATTACTCTCCAACTG ATCCCAACTCTGGAATGAAGATCCTAACAGAATTCCCCATCCCTATAAGGGACCTAACTAACTAACTAGCTGACTCAGCA GTTCCCCCCCTACCAATAACAGCTATACTACTAACTACTAGTATTCACAATTGTGAACCAAACTTCACCAAGCTGGGCCT TCAAACCCGAGCTAGCATTCACTTCTTAGCCTTTCGCTGATAAACCGTTGTCACCAAAGGTCCAACTCTATCATTATGCA GCAATACATCATGATTTCTGAGAGCGAACTCGACAGACATCATGCGAGCATCCAGGGGTGTCTATTCAGTGTGAAGCCAT CACGGTTTGCATAAACTGGTTGCTGTCCTCTGCAGCAATTCTCTCAAAAAAAGGCACTAATTTATAAGAACAATCTCCTA TCTAGCAGACAGTGGAAATGTAGCTCCTAGTAGAGCAGTCTCTACCTAGGCCAAAACCACAAACAGAAAAGATACCGATG CTCCCAACTACGTGAGTCCCACCTGATATCCTTCGCTGCCCGCCTCTCTTCTTACTCCCAACCTCTTAGTCACTACATTA ACCGCACCCACTTGCCTCCTTAGGCCTCCTAGAGTAGACTTGTAATATTTTGTGTTTGTGGTGCTCGGGTTTGGGCACAG GTGGCCCATCATTATCACTGGTTAATTATGATTAAATAGTAAGAGATGTGGAAAAACAGAAAGAGAGATTGTTGTTAATC ATAATTCTTCTATCTGGTTAAAGCAAGGGGGGGAGTTTTTTCTTTTTTCCTGTCAAGTATTTCCTAGATCAATTTTTGAA TATCTAAAGTATGTACATGTGTCTCACTCTTGTATGGTCACTCTATTTCTATTCTCACTTTCAAATACACTGCATACATC TCCTAAATGGAGTTGTACAGAACTTTGGGTGGGACCAGTTGTACTGTACTCATGCTGCAAACTGTGCAGTTGTGAACTTA TTTACTCCAAGTCATCTGTAGTTACTTGTCTTTCATATTTTAATATGAAACACTTTGTTAGAAGCATGACACTCTGGGAA GCGCATATTGTGATAGAACTTGCTGTCTGATGTTATCCTTGCTATTACGTAAAAGTAATGGCTTCTTGCAAAAATATGAA GTTAATTTCAGCTAGCTAGCAATTTTCTCCAATTTTTTTTAAACTTTCTTTAGATTAAAATTTTCAGGAAATGGGGGTGC TCAGGCTCCAATTTTGCTTATGGATGGTGTAGCAAAGATTTCCTTACCTACTTTTGCAATGGCAGCCTACAAGTTAAAGG GATCTATATGGCTGCAAAATGGAGTTAGTGACAATCAGGTGGCAAATTCTCTCTTGCAGGCTGCAGATAACTGGTTAAGG CTACATCAGGTGAATCACCCAGATTATCGGTTCTTTGTAACACATGGCACATACCACAAGTGAACTGAATGAGATGACAT GTCATTACCTTTTCATGGCTAAATCTTAAAGCTACTAGCCTTAAATTTATGTTCGTTGATCGATGCAAGCTTGGTATGAT CCATCCATCTGTAAAGACTCTGATGGTGTTGGGACTTTCTAATGTGGGCTTCTGTTACATTCCACAGTAGCACAAACGAT GAGATGATCTCATCGAAGAATGAAATACAGATTGCTAAAGTGAAAAAAATATAAGTATTGTTTGAAAAACAAATGCCACC TAAGTGGAAGACCCTTATGGAAAGCGAGAAAGAGCTAAATATACAGCAAAACTGGCTAGTTCTCCAAGTTCACAGGAAAC ATATTTGGGATGCAGCCAGACTTCCAAGCCTTTTTTTTAGATCAGTAGTGATTGAGTTTTTAGACTTAAAGGTTTACTGA TAGTTATGTTGTGATTTAGAAAATAATGGGTGAGATGCTGAAATATATAGACTTTTCTGTATAGCAAGGTACCCTTCTGG CTCTACATCGGCATATACCTGATAGAAGGGTTGGTTATATTGATCTGACCATTAGTTGTATTGCTGTATACTTGTTTTTG CCATGGAGGTGGATTTGACCACCTGAATAGAAGTAGATATTGTGGAAGTGGATTTAAAGCAAGTGTTGAGAAATGTTATG AAACTTAAATGCAGAAAATTTATTGATTGGTGATGCTTCAAACATCCCTGAAGATCAGGGACTCTTCCTACAATTAGAAA GAAGATGTCAGCATCACTATTGTGATT
CDS sequence (LotjaGi2g1v0203900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGGGACTGCCTTGCAATTTGGGGATTTTCGTGGCGAGGATCGGTTTTACATTCCGGTGAAGGCAAGGAAGAACCA GAACCAGCGTAAGCAAGCTCAGAGAGATAAGAGTGTTGAAAATGAGGCTGCTTTGAAGAGCCAGCTTGTTGCTTCTGAGG ATAGGAACCTCAATGAATCTTCGAATTCGTCGAACAAACCATCTTCTTGTCCTTCTGTAGGTTCTAGTAACATTGATAGG TTCCTGGAGTCAACAACACCTATAGTCCCAGTTCAGTATTTCTCTAAGACAACAATGAGAGGTTGGAAGACTTGTGATGT GGAGTATCTATCTTACTTCTCCCTGAACGATCTCTGGGAATCATTTAGGGAATGGAGTGCATATGGAGCAGGCGTGCCTT TGCTACTTGATGGAAGAGAATCTGTTGTCCAATATTATGTTCCTTATTTGTCGGCTATTCAACTATATGGTCAATCAGCT AAGAAGTCGAATGCTAAGCCAAGATACACTGGTGAAGATAGTGATGGTGATTACTACAGGGATTCAAGTAGCGATGCAAG TAGTGATAGTGAATTTGGAAAAAGGACTGAAAATTTTATAGCACAAAGTAGTCAATATCGACCAGGCAATGTTTCTTTTC AAATGAGCAGTTATCTGTACATGATAAACACTATGCGATGCAAGATGGGTTTTCTAGCGATGACAGTGAATCTGGGAACC CTCAAGATCTTCTTTTTGAGTATTTTGATCAAGATCCTCCTTATAGCCGTGAACCATTGGCTGACAAGGCCAGTTCTGGT CTTAATTAATGTGTGGCTTATTTACCGTTATTTTGAACAATCCATCTTATATTTTATTATATTTGGACAGATACTAGATC TTGCACACCACTATCCTAGCCTCAAATCATTGAGAAGTTGTGATTTACTGCCATCCAGTTGGTTGTCTGTGGCATGGTAT CCTATATATCGAATACCCACAGGTCCAACATTAAAAGATTTAGATGCCTGCTTTCTTACTTACCATACTCCATACACCCT TGACAGGTATCATGGAACTTTAATCCTATGTTTGACCACTATGGCATTGTAA
Protein sequence (LotjaGi2g1v0203900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGTALQFGDFRGEDRFYIPVKARKNQNQRKQAQRDKSVENEAALKSQLVASEDRNLNESSNSSNKPSSCPSVGSSNIDR FLESTTPIVPVQYFSKTTMRGWKTCDVEYLSYFSLNDLWESFREWSAYGAGVPLLLDGRESVVQYYVPYLSAIQLYGQSA KKSNAKPRYTGEDSDGDYYRDSSSDASSDSEFGKRTENFIAQSSQYRPGNVSFQMSSYLYMINTMRCKMGFLAMTVNLGT LKIFFLSILIKILLIAVNHWLTRPVLVLINVWLIYRYFEQSILYFIIFGQILDLAHHYPSLKSLRSCDLLPSSWLSVAWY PIYRIPTGPTLKDLDACFLTYHTPYTLDRYHGTLILCLTTMAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 230 | 230 | - | – | |
| PANTHER | 1 | 232 | 232 | 3.9E-137 | – | |
| PANTHER | 1 | 232 | 232 | 3.9E-137 | – | |
| MobiDBLite | 50 | 74 | 25 | - | – | |
| MobiDBLite | 51 | 74 | 24 | - | – | |
| Pfam | 76 | 198 | 123 | 2.7E-36 | ||
| MobiDBLite | 164 | 191 | 28 | - | – | |
| MobiDBLite | 166 | 191 | 26 | - | – | |
| Phobius | 231 | 257 | 27 | - | – | |
| TMHMM | 231 | 253 | 23 | - | – | |
| Phobius | 258 | 276 | 19 | - | – | |
| TMHMM | 266 | 288 | 23 | - | – | |
| PANTHER | 273 | 346 | 74 | 3.9E-137 | – | |
| PANTHER | 273 | 346 | 74 | 3.9E-137 | – | |
| Pfam | 273 | 343 | 71 | 5.4E-28 | ||
| Phobius | 277 | 295 | 19 | - | – | |
| Phobius | 296 | 363 | 68 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0203900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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