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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0227100 |
Transcript ID | LotjaGi2g1v0227100.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT5G56590.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|A0A1J7IAV4|A0A1J7IAV4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0227100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68409432..68411010) extracted from Lotus japonicus Gifu genome v1.2.
ATAGAGGTTTCCACACTAGTAAAGCTGGAATTTTCTTTCTTTCTTTCTCTCTCTCTCTCAAGTCTTATCTAACAGATCCA TTGAGTTCTTTGCAATTGTTAATTGATTTTTGTGAAATTTTGACAGATTGTTGCAATGGTAGTTTTGTTGGAATTTGCTA TGGAAGGAATGCTGATAACCTTCCTACACCTGATAAGGCGGTCCAACTGATTCAACTTCAGAAAATAAAATATGTTAGGA TCTATGATTCTAACATACAGGTTCTGAAGGCTTTTGCAAACACTGGAGTTGAGCTCATGATTGGGATTCCAAATCTAGAT TTGCTTCCGTTTGCCCAGTTCCAATCAAATGCAGACACTTGGCTGAGAAACAGCGTCCTCCCTTACTACCCAGCCACTAA GATCACATACATAACTGTTGGTGCAGAAGTCACAGAAAGCACCAGCAACATTTCAGCATTGGTAGTGCCTGCTATGAACA ATGTCCTTGCAGCCCTCAAGAAAGCTGGACTTCATAAAAAGATTAAAATTTCCACCACCCATTCCCTTGGGGTTCTGTCT CGATCGTTCCCGCCTTCTGCCGGTGCTTTCAGTGGCAAACATGCTCACTTCCTGAAGCCATTGCTAGAATTTCTTGCTGA GAACCAGTCACCTTTTATGGTTGATATATATCCTTACTATGCTTACCGAGACTCTTCGAACAAAGTGTCCTTGGACTATG CCCTTTTTGAATCTTCCTCTGAAGTTGTTGATCCAAACACTGGTTTGCTGTATATGAACATGTTTGATGCCCAGATTGAT GCTATTTATTTTGCACTGGTGAGTCTGAATTTCAGGACAATTAAGGTCATGGTCACTGAAACTGGTTGGCCTTCAAAAGG ATCGCCGAAGGAGACAGCTGCTACTCCTGATAATGCACAAACATACAACACTAATCTGATACGGCATACTATTAACGACA CCGGCACGCCTGCGAGGCCCGGAGAAGAGTTGGATGTCTACATTTTCTCATTGTTCAACGAAAATAGGAAGCCTGGTTTG GAATCTGAGAGGAACTGGGGATTATTCAATCCAGATCAGACAAGTGTGTATAGCCTAGATTTCAGCGGAAAAGCTGATGT TGATGTGAATGTGACTACAGATGGAAATGTAACCGGATCAAATGGAACAACATGGTGCATCGCTTCGAGTAACGCCTCAC AGATTGACTTGCAGAATGCCGTAGATTGGGCTTGTGGTGCTGGCAATGTGGACTGTACTGCTATCCAGCCTAGCCAGCCT TGTTTTGAGCCAGATAACCTTGTCTCACATGCATCATACGCTTTTAATACCTATTATCAGCAAAATGGGGCTTCAGATGT GGCTTGTGGTTTTGGAGGGACTGGTGAAATAGTCGATAAGGATCCGAGTATGTTCATTGCTTCCCATCATCAATTTTGCT TTTCTGTTTTCTGTCGGTTTTTGTCATGTACAAATTTGCTTGGCAACTTTTGCATACTTATTGTTATCTCCAACTCTGCA AATATTTTGGAGAAGGGTTGTACTTGTTTGACATTATAGTCCATAATATTAGATCCTTT
CDS sequence (LotjaGi2g1v0227100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGGATTCCAAATCTAGATTTGCTTCCGTTTGCCCAGTTCCAATCAAATGCAGACACTTGGCTGAGAAACAGCGT CCTCCCTTACTACCCAGCCACTAAGATCACATACATAACTGTTGGTGCAGAAGTCACAGAAAGCACCAGCAACATTTCAG CATTGGTAGTGCCTGCTATGAACAATGTCCTTGCAGCCCTCAAGAAAGCTGGACTTCATAAAAAGATTAAAATTTCCACC ACCCATTCCCTTGGGGTTCTGTCTCGATCGTTCCCGCCTTCTGCCGGTGCTTTCAGTGGCAAACATGCTCACTTCCTGAA GCCATTGCTAGAATTTCTTGCTGAGAACCAGTCACCTTTTATGGTTGATATATATCCTTACTATGCTTACCGAGACTCTT CGAACAAAGTGTCCTTGGACTATGCCCTTTTTGAATCTTCCTCTGAAGTTGTTGATCCAAACACTGGTTTGCTGTATATG AACATGTTTGATGCCCAGATTGATGCTATTTATTTTGCACTGGTGAGTCTGAATTTCAGGACAATTAAGGTCATGGTCAC TGAAACTGGTTGGCCTTCAAAAGGATCGCCGAAGGAGACAGCTGCTACTCCTGATAATGCACAAACATACAACACTAATC TGATACGGCATACTATTAACGACACCGGCACGCCTGCGAGGCCCGGAGAAGAGTTGGATGTCTACATTTTCTCATTGTTC AACGAAAATAGGAAGCCTGGTTTGGAATCTGAGAGGAACTGGGGATTATTCAATCCAGATCAGACAAGTGTGTATAGCCT AGATTTCAGCGGAAAAGCTGATGTTGATGTGAATGTGACTACAGATGGAAATGTAACCGGATCAAATGGAACAACATGGT GCATCGCTTCGAGTAACGCCTCACAGATTGACTTGCAGAATGCCGTAGATTGGGCTTGTGGTGCTGGCAATGTGGACTGT ACTGCTATCCAGCCTAGCCAGCCTTGTTTTGAGCCAGATAACCTTGTCTCACATGCATCATACGCTTTTAATACCTATTA TCAGCAAAATGGGGCTTCAGATGTGGCTTGTGGTTTTGGAGGGACTGGTGAAATAGTCGATAAGGATCCGAGTATGTTCA TTGCTTCCCATCATCAATTTTGCTTTTCTGTTTTCTGTCGGTTTTTGTCATGTACAAATTTGCTTGGCAACTTTTGCATA CTTATTGTTATCTCCAACTCTGCAAATATTTTGGAGAAGGGTTGTACTTGTTTGACATTATAG
Protein sequence (LotjaGi2g1v0227100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGIPNLDLLPFAQFQSNADTWLRNSVLPYYPATKITYITVGAEVTESTSNISALVVPAMNNVLAALKKAGLHKKIKIST THSLGVLSRSFPPSAGAFSGKHAHFLKPLLEFLAENQSPFMVDIYPYYAYRDSSNKVSLDYALFESSSEVVDPNTGLLYM NMFDAQIDAIYFALVSLNFRTIKVMVTETGWPSKGSPKETAATPDNAQTYNTNLIRHTINDTGTPARPGEELDVYIFSLF NENRKPGLESERNWGLFNPDQTSVYSLDFSGKADVDVNVTTDGNVTGSNGTTWCIASSNASQIDLQNAVDWACGAGNVDC TAIQPSQPCFEPDNLVSHASYAFNTYYQQNGASDVACGFGGTGEIVDKDPSMFIASHHQFCFSVFCRFLSCTNLLGNFCI LIVISNSANILEKGCTCLTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 366 | 366 | 2.5E-207 | – | |
PANTHER | 1 | 366 | 366 | 2.5E-207 | – | |
Gene3D | 1 | 269 | 269 | 4.1E-106 | – | |
SUPERFAMILY | 1 | 269 | 269 | 1.69E-71 | ||
Pfam | 2 | 269 | 268 | 4.7E-80 | ||
ProSitePatterns | 182 | 195 | 14 | - | ||
SMART | 292 | 388 | 97 | 1.0E-41 | ||
Pfam | 292 | 363 | 72 | 4.4E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0227100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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