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LotjaGi2g1v0236800.5

Overview

Field Value
Gene ID LotjaGi2g1v0236800
Transcript ID LotjaGi2g1v0236800.5
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Actin; TAIR: AT3G12110.1 actin-11; Swiss-Prot: sp|A2XLF2|ACT1_ORYSI Actin-1; TrEMBL-Plants: tr|I3SK98|I3SK98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0236800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:69801867..69803674) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGTAATGAAATGGATCATTTT TTTGTGTTTTTCTTCCTTTGTTGATTTTCTGGGGATGAATCTTAGATAACACATTGGCGGGGCATTGCGATGTGTGTTGT TTTCACTTTTCAGGCAGGATTTGCAGGAGATGATGCCCCGCGAGCTGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCACA CCGGTGTGATGGTTGGCATGGGCCAGAAGGATGCCTATGTTGGGGATGAGGCACAGTCCAAAAGAGGTATTCTGACTCTC AAGTACCCTATTGAGCATGGTATTGTTAGCAACTGGGACGATATGGAGAAGATTTGGCATCATACCTTCTATAACGAGCT TCGTGTGGCTCCGGAAGAGCATCCCGTTCTGTTGACGGAGGCTCCTCTTAACCCAAAGGCTAATCGTGAGAAGATGACCC AGATCATGTTTGAGACTTTCAATGCCCCTGCTATGTATGTAGCCATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGT ACTACTGGTAAGCAATACCTTCAAATTAATTGATGATGATTAGTTTCAAGTTTTAGTTTGAGCTCATCTGGAGAGCTTTA GTTTGGGAAATGCTGAACATTAATAAATGTTGATTGACGAAATGCAAGATTGCCACTTGGCTTTACATGAGTTGTGTCTA AATAAATCTTTTTTACATTGATTTTTTACCATGATTTCTAACAAACAAAATCTAATTGGTTAAAAATGGAGTTCTTGCAT GCATTTTATCGCACTATATAGTATTACTCCTTGAGTTTTAGATCGATATAAGACACATGCGCCTTTACAATGGATTAATA AACACTTGTTGTAGATGGACTTTTAAAACTATGCTTTATTTTTTCTCATCAACCAAGAGGGCCTCTATTGGTTCTCTTAT TCATTGTAATTGATAATTTTTCTCCCTTCTTCTTTTCCTCTATGATGATTCATGTTTCTTCTTATTTCAGGTATTGTGTT GGATTCTGGTGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTTCCACACGCCATCCTTCGTCTTGATT TGGCTGGTCGTGACCTCACTGACTTCTTAATGAAGATTCTGACTGAACGTGGGTACTCGTTTACCACTTCAGCAGAGCGA GAAATTGTCAGGGACATGAAGGAAAAGCTGGCATACATTGCCCTTGACTATGAGCAAGAGATAGAGACATCCAAGACCAG CTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAGCGTTTTAGGTGTCCAGAGG TCTTGTTCCAACCATCCCTGGTGGGAATGGAAGCTGCAGGAATTCACGAGACAACATACAACTCCATAATGAAATGTGAT GTTGACATCAGGAAAGACCTGTATGGTAACATTGTTCTCTCAGGAGGTACAACCATGTTCCCTGGCATTGCTGATAGGAT GAGCAAGGAAATTTCTGCTTTAGCCCCCAGCAGCATGAAGATCAAGGTGGTTGCACCGCCCGAGAGAAAGTACAGTGTCT GGATTGGTGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGGTATGTTCTGTTCTCTTCTAATTCATTTGTTTCTTT GAATGTAGCTATGAGATGCCTTCATTTGATTGCTAATGAGCCAAACTGTCCTTTAAATGCAGATGTGGATTGCAAAGGCA GAATATGATGAATCTGGACCATCAATTGTGCACAGAAAGTGCTTCTAA 

CDS sequence (LotjaGi2g1v0236800.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGCAGGATTTGCAGGAGATGA TGCCCCGCGAGCTGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCACACCGGTGTGATGGTTGGCATGGGCCAGAAGGATG CCTATGTTGGGGATGAGGCACAGTCCAAAAGAGGTATTCTGACTCTCAAGTACCCTATTGAGCATGGTATTGTTAGCAAC TGGGACGATATGGAGAAGATTTGGCATCATACCTTCTATAACGAGCTTCGTGTGGCTCCGGAAGAGCATCCCGTTCTGTT GACGGAGGCTCCTCTTAACCCAAAGGCTAATCGTGAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGCCCCTGCTA TGTATGTAGCCATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGTACTACTGGTATTGTGTTGGATTCTGGTGATGGT GTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTTCCACACGCCATCCTTCGTCTTGATTTGGCTGGTCGTGACCT CACTGACTTCTTAATGAAGATTCTGACTGAACGTGGGTACTCGTTTACCACTTCAGCAGAGCGAGAAATTGTCAGGGACA TGAAGGAAAAGCTGGCATACATTGCCCTTGACTATGAGCAAGAGATAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAG AGCTATGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAGCGTTTTAGGTGTCCAGAGGTCTTGTTCCAACCATC CCTGGTGGGAATGGAAGCTATCAGGAAAGACCTGTATGGTAACATTGTTCTCTCAGGAGGTACAACCATGTTCCCTGGCA TTGCTGATAGGATGAGCAAGGAAATTTCTGCTTTAGCCCCCAGCAGCATGAAGATCAAGGTGGTTGCACCGCCCGAGAGA AAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATA TGATGAATCTGGACCATCAATTGTGCACAGAAAGTGCTTCTAA 

Protein sequence (LotjaGi2g1v0236800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQEIETSKTSSAVEK SYELPDGQVITIGAERFRCPEVLFQPSLVGMEAIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPER KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 4 358 355 2.2E-242
PANTHER 4 358 355 2.2E-242
Pfam 5 273 269 5.1E-95
SUPERFAMILY 6 155 150 7.34E-66
SMART 7 360 354 2.1E-213
CDD 10 183 174 5.28236E-18
Gene3D 10 356 347 1.5E-171
PRINTS 28 37 10 1.8E-56
PRINTS 51 62 12 1.8E-56
ProSitePatterns 55 65 11 -
PRINTS 63 85 23 1.8E-56
ProSitePatterns 106 118 13 -
PRINTS 117 130 14 1.8E-56
Gene3D 140 323 184 1.5E-171
PRINTS 142 161 20 1.8E-56
SUPERFAMILY 148 360 213 1.99E-86
Gene3D 182 272 91 1.5E-171
PRINTS 238 254 17 1.8E-56
ProSitePatterns 341 349 9 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0236800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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