Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0236800 |
| Transcript ID | LotjaGi2g1v0236800.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin; TAIR: AT3G12110.1 actin-11; Swiss-Prot: sp|A2XLF2|ACT1_ORYSI Actin-1; TrEMBL-Plants: tr|I3SK98|I3SK98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0236800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69801867..69803690) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGTAATGAAATGGATCATTTT TTTGTGTTTTTCTTCCTTTGTTGATTTTCTGGGGATGAATCTTAGATAACACATTGGCGGGGCATTGCGATGTGTGTTGT TTTCACTTTTCAGGCAGGATTTGCAGGAGATGATGCCCCGCGAGCTGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCACA CCGGTGTGATGGTTGGCATGGGCCAGAAGGATGCCTATGTTGGGGATGAGGCACAGTCCAAAAGAGGTATTCTGACTCTC AAGTACCCTATTGAGCATGGTATTGTTAGCAACTGGGACGATATGGAGAAGATTTGGCATCATACCTTCTATAACGAGCT TCGTGTGGCTCCGGAAGAGCATCCCGTTCTGTTGACGGAGGCTCCTCTTAACCCAAAGGCTAATCGTGAGAAGATGACCC AGATCATGTTTGAGACTTTCAATGCCCCTGCTATGTATGTAGCCATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGT ACTACTGGTAAGCAATACCTTCAAATTAATTGATGATGATTAGTTTCAAGTTTTAGTTTGAGCTCATCTGGAGAGCTTTA GTTTGGGAAATGCTGAACATTAATAAATGTTGATTGACGAAATGCAAGATTGCCACTTGGCTTTACATGAGTTGTGTCTA AATAAATCTTTTTTACATTGATTTTTTACCATGATTTCTAACAAACAAAATCTAATTGGTTAAAAATGGAGTTCTTGCAT GCATTTTATCGCACTATATAGTATTACTCCTTGAGTTTTAGATCGATATAAGACACATGCGCCTTTACAATGGATTAATA AACACTTGTTGTAGATGGACTTTTAAAACTATGCTTTATTTTTTCTCATCAACCAAGAGGGCCTCTATTGGTTCTCTTAT TCATTGTAATTGATAATTTTTCTCCCTTCTTCTTTTCCTCTATGATGATTCATGTTTCTTCTTATTTCAGGTATTGTGTT GGATTCTGGTGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTTCCACACGCCATCCTTCGTCTTGATT TGGCTGGTCGTGACCTCACTGACTTCTTAATGAAGATTCTGACTGAACGTGGGTACTCGTTTACCACTTCAGCAGAGCGA GAAATTGTCAGGGACATGAAGGAAAAGCTGGCATACATTGCCCTTGACTATGAGCAAGAGATAGAGACATCCAAGACCAG CTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAGCGTTTTAGGTGTCCAGAGG TCTTGTTCCAACCATCCCTGGTGGGAATGGAAGCTGCAGGAATTCACGAGACAACATACAACTCCATAATGAAATGTGAT GTTGACATCAGGAAAGACCTGTATGGTAACATTGTTCTCTCAGGAGGTACAACCATGTTCCCTGGCATTGCTGATAGGAT GAGCAAGGAAATTTCTGCTTTAGCCCCCAGCAGCATGAAGATCAAGGTGGTTGCACCGCCCGAGAGAAAGTACAGTGTCT GGATTGGTGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGGTATGTTCTGTTCTCTTCTAATTCATTTGTTTCTTT GAATGTAGCTATGAGATGCCTTCATTTGATTGCTAATGAGCCAAACTGTCCTTTAAATGCAGATGTGGATTGCAAAGGCA GAATATGATGAATCTGGACCATCAATTGTGCACAGAAAGTGCTTCTAAATTGTTTGAGCAATAG
CDS sequence (LotjaGi2g1v0236800.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGCAGGATTTGCAGGAGATGA TGCCCCGCGAGCTGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCACACCGGTGTGATGGTTGGCATGGGCCAGAAGGATG CCTATGTTGGGGATGAGGCACAGTCCAAAAGAGGTATTCTGACTCTCAAGTACCCTATTGAGCATGGTATTGTTAGCAAC TGGGACGATATGGAGAAGATTTGGCATCATACCTTCTATAACGAGCTTCGTGTGGCTCCGGAAGAGCATCCCGTTCTGTT GACGGAGGCTCCTCTTAACCCAAAGGCTAATCGTGAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGCCCCTGCTA TGTATGTAGCCATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGTACTACTGGTATTGTGTTGGATTCTGGTGATGGT GTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTTCCACACGCCATCCTTCGTCTTGATTTGGCTGGTCGTGACCT CACTGACTTCTTAATGAAGATTCTGACTGAACGTGGGTACTCGTTTACCACTTCAGCAGAGCGAGAAATTGTCAGGGACA TGAAGGAAAAGCTGGCATACATTGCCCTTGACTATGAGCAAGAGATAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAG AGCTATGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAGCGTTTTAGGTGTCCAGAGGTCTTGTTCCAACCATC CCTGGTGGGAATGGAAGCTGCAGGAATTCACGAGACAACATACAACTCCATAATGAAATGTGATGTTGACATCAGGAAAG ACCTGTATGGTAACATTGTTCTCTCAGGAGGTACAACCATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAAATTTCT GCTTTAGCCCCCAGCAGCATGAAGATCAAGGTGGTTGCACCGCCCGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTAT CTTGGCATCCCTGAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATATGATGAATCTGGACCATCAATTGTGCACA GAAAGTGCTTCTAA
Protein sequence (LotjaGi2g1v0236800.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQEIETSKTSSAVEK SYELPDGQVITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEIS ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 375 | 372 | 1.3E-262 | ||
| PANTHER | 4 | 375 | 372 | 1.3E-262 | – | |
| Pfam | 5 | 377 | 373 | 1.6E-146 | ||
| SUPERFAMILY | 6 | 155 | 150 | 8.2E-66 | ||
| SMART | 7 | 377 | 371 | 5.1E-234 | ||
| CDD | 10 | 183 | 174 | 6.95382E-18 | – | |
| Gene3D | 10 | 373 | 364 | 8.7E-188 | – | |
| PRINTS | 28 | 37 | 10 | 2.1E-56 | ||
| PRINTS | 51 | 62 | 12 | 2.1E-56 | ||
| ProSitePatterns | 55 | 65 | 11 | - | ||
| PRINTS | 63 | 85 | 23 | 2.1E-56 | ||
| ProSitePatterns | 106 | 118 | 13 | - | ||
| PRINTS | 117 | 130 | 14 | 2.1E-56 | ||
| Gene3D | 140 | 340 | 201 | 8.7E-188 | – | |
| PRINTS | 142 | 161 | 20 | 2.1E-56 | ||
| SUPERFAMILY | 149 | 377 | 229 | 3.97E-97 | ||
| Gene3D | 182 | 274 | 93 | 8.7E-188 | – | |
| PRINTS | 238 | 254 | 17 | 2.1E-56 | ||
| ProSitePatterns | 358 | 366 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0236800.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…