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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0268800 |
| Transcript ID | LotjaGi2g1v0268800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein COBRA; TAIR: AT3G02210.1 COBRA-like protein 1 precursor; Swiss-Prot: sp|Q9SRT7|COBL1_ARATH COBRA-like protein 1; TrEMBL-Plants: tr|A0A151RG24|A0A151RG24_CAJCA Protein COBRA; Found in the gene: LotjaGi2g1v0268800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73817499..73819761) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGTTTGATGTCCAATATGTTATTGATTACCTTGTTCCCTCTCCCTTTCATATTAATTTCCACTTAAATGACTTAAT TTGAAGTTGGCTGCATATCTTTCAGAAGCTTATGATCCACTTGACCCATATGGAAACATCACAATCAAATGGGATGTTAA AAGCTGGACAGGTGATGGTTATCTTGTAAGTACAATCTTCTAGGTTTCACCTACTAAAATTCAAAGCAAATCACCATGGT CTTGAGATGTGATAGGGTTTGGATTTCAGATCTGAGGCACTTTTTTAGATTTTTCAAGTCTATATGTACGATTTAAGACT TTTAAGTTGTGGAATTATTGACTAAACTCAAGTATCCCGACTTGTATTAGTGTCAGAGCCATTTAGAATTGGATGAGTTC ATTGTTGTTCCTTTAGTTGTTTTGGTGTCTAAGAAACAATTAAATGCACAGGCTATTGTTACAATTTACAACTTCCAACA ATATCGTCATATCTCAGCACCTGGGTGGTCACTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAACATGATGGGAG GGCAGACCACCGAGCAAGGAGATTGTTCAAAATTTAAGGGAGAACAGATCCCACATTGCTGCAAAAAGGATCCAATTGTT GTAGATCTACTTCCGGGAACACCTTACAATCAACAAGTTACAAGTTGTTGCAAAGGTGGTGTCCTCAGCTCATGGAAACA AGATCCAATCAATGCTGTTGCCTCATTTCAAGTTGTTGTGGGTAGAGCTGGTACCACAAACAAAACTGTCAAATTGCCCA AAAACATCACCTTGAAAGCACCAGGACCAGGTTATACATGTGGACCAGCAAAAATTGTGAAACCCACCCGATTTATAACA CCTGACAAAAGGAGAGTTACCCAAGCACTTAGTAAGTTATTGGACTCCTATGTTTATTTCCTTAAACCAAATGTTATCCA TTACTTGTAGCTTTTTTTAGTACCAAATTATGTCATCCAGTAATAAACTTATCATTTTTGTGATTGATCTTAAATGCTCC AAGTTTACAATTGTTCTCAGTTCCTACTTCAAATAAGAAAGATCCAGCATTTTACTTCGACCTTGACATTGATCTGATTT TTTGCAGTGACTTGGAATGTGACATGCATGTATTCACAATTTCTAGCTCAGAAAGCTCCTACTTGTTGTGTGTCCCTCTC ATCTTTCTATAATGATACTGTTGTATCCTGCCCAACATGTGCATGTGGCTGCCAAGGAAACTCATCACAATCAGGGAACT GCGTAGAGTAGGTTTTTATTACTCATGGCCTATGACTTTCTTCTAAACTGAAATGAATATCATACACTCACATATGTCCA TTTTGTGTGTGGTTACAGTCCAGATTCGCCACATTTGGCATCAATTGTTTCCAACCCTGGAAATAATAGCATTAAACCTT TGGTTCGATGCACTAACCATATGTGCCCAATTCGAGTTCACTGGCATGTGAAGCTAAACTACAAGGAGTACTGGAGAGTG AAGGTCACCATTACTAATTTCAATTACAGGATGAATTATTCTGATTGGAACTTAGTAGTCCAACACCCAAACTTTGACAA TTTGACCCAGCTTTTTAGTTTCTACTACGCGTCATTAACTCCCTACGGGGCAATAAGTAAGTGCTATCTTTCTCGGATTT GCAATCTTACAGACAATTTGTATGGTTCTTTAACTTAGTTGAATATAATGTTCAGTTTTACTTCAGGAGTAGATGTAGTT ATTATTTATTAGTAATTTGTCTGATAAAAAGTTATTGGGTTGTCAAGTTTCTTTATTAGCAAATTTCTTTGGAATCATAT ATTCTATTTTTTCATGATCACCGTATGATTATGACCATCATATATTCTTATTTTCACCATACAACGTCAAAACTTTTTAC TCCTCAATGATTCCAGTGGCACCAAAACTAATGATCCAAGTTGTTTTCAACAGATGATACAGCAATGCTTTGGGGAATTA AGTTCTACAATGATTTACTCATGCAAGCTGGCCCTCTTGGTAATGTACAGTCAGAGCTACTTTTCAGAAAGGATAAGTCA ACTTTTACTTTTCATGAAGGTTGGGCTTTTCCTCGGAGGATCTATTTCAATGGTGACAATTGTGTGATGCCACCACCTGA TGCTTATCCATGGTTACCTAATGCCGGTTCGCAGCAAAAGGTTTCCCTACTTGCTTTGATGTTGACTTTTTTGGTAACCT TGGTATTTTATTCCTATGTTTGA
CDS sequence (LotjaGi2g1v0268800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGAGGGCAGACCACCGAGCAAGGAGATTGTTCAAAATTTAAGGGAGAACAGATCCCACATTGCTGCAAAAAGGA TCCAATTGTTGTAGATCTACTTCCGGGAACACCTTACAATCAACAAGTTACAAGTTGTTGCAAAGGTGGTGTCCTCAGCT CATGGAAACAAGATCCAATCAATGCTGTTGCCTCATTTCAAGTTGTTGTGGGTAGAGCTGGTACCACAAACAAAACTGTC AAATTGCCCAAAAACATCACCTTGAAAGCACCAGGACCAGGTTATACATGTGGACCAGCAAAAATTGTGAAACCCACCCG ATTTATAACACCTGACAAAAGGAGAGTTACCCAAGCACTTATGACTTGGAATGTGACATGCATGTATTCACAATTTCTAG CTCAGAAAGCTCCTACTTGTTGTGTGTCCCTCTCATCTTTCTATAATGATACTGTTGTATCCTGCCCAACATGTGCATGT GGCTGCCAAGGAAACTCATCACAATCAGGGAACTGCGTAGATCCAGATTCGCCACATTTGGCATCAATTGTTTCCAACCC TGGAAATAATAGCATTAAACCTTTGGTTCGATGCACTAACCATATGTGCCCAATTCGAGTTCACTGGCATGTGAAGCTAA ACTACAAGGAGTACTGGAGAGTGAAGGTCACCATTACTAATTTCAATTACAGGATGAATTATTCTGATTGGAACTTAGTA GTCCAACACCCAAACTTTGACAATTTGACCCAGCTTTTTAGTTTCTACTACGCGTCATTAACTCCCTACGGGGCAATAAA TGATACAGCAATGCTTTGGGGAATTAAGTTCTACAATGATTTACTCATGCAAGCTGGCCCTCTTGGTAATGTACAGTCAG AGCTACTTTTCAGAAAGGATAAGTCAACTTTTACTTTTCATGAAGGTTGGGCTTTTCCTCGGAGGATCTATTTCAATGGT GACAATTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCTAATGCCGGTTCGCAGCAAAAGGTTTCCCTACTTGC TTTGATGTTGACTTTTTTGGTAACCTTGGTATTTTATTCCTATGTTTGA
Protein sequence (LotjaGi2g1v0268800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGGQTTEQGDCSKFKGEQIPHCCKKDPIVVDLLPGTPYNQQVTSCCKGGVLSSWKQDPINAVASFQVVVGRAGTTNKTV KLPKNITLKAPGPGYTCGPAKIVKPTRFITPDKRRVTQALMTWNVTCMYSQFLAQKAPTCCVSLSSFYNDTVVSCPTCAC GCQGNSSQSGNCVDPDSPHLASIVSNPGNNSIKPLVRCTNHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNLV VQHPNFDNLTQLFSFYYASLTPYGAINDTAMLWGIKFYNDLLMQAGPLGNVQSELLFRKDKSTFTFHEGWAFPRRIYFNG DNCVMPPPDAYPWLPNAGSQQKVSLLALMLTFLVTLVFYSYV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 359 | 359 | 4.9E-218 | – | |
| Phobius | 1 | 342 | 342 | - | – | |
| PIRSF | 1 | 362 | 362 | 4.4E-207 | ||
| Pfam | 1 | 130 | 130 | 5.8E-50 | ||
| PANTHER | 1 | 359 | 359 | 4.9E-218 | ||
| Phobius | 343 | 361 | 19 | - | – | |
| TMHMM | 343 | 361 | 19 | - | – | |
| Phobius | 362 | 362 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellulose microfibril organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. | ||
| Cellular component | Anchored component of membrane | The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. |
Expression pattern of LotjaGi2g1v0268800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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