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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0311900 |
| Transcript ID | LotjaGi2g1v0311900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cofactor assembly of complex protein C, putative; TAIR: AT1G59840.1 cofactor assembly of complex C; Swiss-Prot: sp|Q6NQK9|CCB4_ARATH Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic; TrEMBL-Plants: tr|V7CJL3|V7CJL3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0311900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78648817..78652621) extracted from Lotus japonicus Gifu genome v1.2.
CAGCAGTACCACCGTGTCCGTTGATAACAAACTCCCATGGAAGCGGGAACTGCGTTCCGTGTCGTGGGTGTTGTCACTGT CAACACTCACATTCCCATTCCCATTTTCAAGAAATCCAAAACCACCGCATTCCAATCTCGCTTCTTCACTTGTTCATCTC CCTCTCCTTCTTCCACTAGTTACCGAGGTCCCAAACCCAAACGCGATTTCCTCGCCGATTGGGTTTCCCAAAACGACGAC GTCGTTCGCACCTTACCGATCTACGTCGGCTCCGCCTCCCTCTTCGCCGTCCTCTTCAATCGCGCCATTTCCGGCATCGC CCCCGTCGCCGACGCCGGCAGTTCACAATCCAGAGCTGACCTCTTGACTTTAGGATTGGCAGTCACCAATATTTTGGCTG GCCTTGTTTGGCTCTCCATAAGACCCAAATCTATAGCTGTGGTGAGCCTCTTTTTTCATTGTTGTGTTTTTCATTCTCTT GTAGTGTGTGTTTGTTTTGGCTTAATTGAGAAAATAATGATTGCTTATGGTGCTTTTTGTAGAAGCTAGAAAATTTTACA AGGATTTTATTTGTCTACAATAAGCTAACTTAAAGATGCCATAACAGGCTTACTTTTGTGCAGGTAAATCCTCAAGGGGT TCAATGCAGGAGGTTGTGCACTGCTCTCCCTCATGTTGCACTTACTGAGCTGCTCTGGTAATGAACATTATGTATACTTG TTGGCTTCATAGATTGAAAATTTGGTTCATGATCGTGGCGTTTATTAGTTGTTCTAACTTAGCAAATGCACATTATGTCC AATAAAAGAAAGGGTGCTTTGTGGCTTGATATTATGCTTGTGTTTTCCACATGTTCTGTTGATAAATTAGATATCAATAT GTATTTAAAAGAATGTGGTATCTTCGACTTTTATAGAGGCATCTTCATTCTGTGGTTGGTTTGGCGTTGCTTGCGGGGTT TTTAGAGGGTTTTTGCTGTAGTGTCTGAGTTTTTGCCGACTTTTGTTGGCAAGGGGTTGTTTCTCAACATTATCTATTTA TGTAAATATATTTCTCTTTCAAAAAAAGAATGTGGTATCTTTTGTATGGGAACTATTGCTTTAAATAGTTAGTTCCTTTT TCTGTTTATTAACAAGAGCAGTATCTTTCGTATCTATTTTCAGGGTATGGGAATCTCTATCAGATATCACCTGCTGCCGA TCACTTGTTATTGTTTATGAGAGCAGTTGTGTACTTCAAATTGGTTTTGCTGCAGAGTCTTCTTCCGGGGATGGTGAGGC TGTAAGTGTGGACATTAATAAATTGATCCAAGGATCAGTATACCAGGGTGTAATGAAATCTGGAGCCCGTAAGTTTCAAA CCATATCAAACACTGAATTTGCTGCTGATTCAGATATCAGTATGGTTTTTTTTCTGAAGATGTGCCCCAGTATTAATGAA AATTTGCTGCGTTTTTTACCTTTGTTCAGAGAGTTACTTGGCTAATCTATCTCTTTATCCTGGGAAATCTGAGCTGTCAT TTCTACCTTCAAATACTCAGGTATCGCGTTTCAATGTGTTAAACTGGGCCATGTTACTTAGGATATTTCTATGCAATTTA TTATTACCCAGTGTTCAAACTAATTCTTTTGGTCTATCATTCAAAACCTGTATGAAGCGAGAACTGTTGATTAGAAAGAG TGAAACATATAGGTAGGGTGTGGGTGGATTTTGGGACAAGTGGGTCCAGTAAAGTAGTTGTATATCCAGTAAAGTATTGT TTAAATTTAATGAGAATTTGGATAAACTTTGACTATGAAATTAACTGGCAATTTATAGTTTAAATACGTAACATGATTTC AGCCATACTTTTGCGTTAGAAAGTTCTTTTCCTTAAAATTCCCGAAGCCCTTGCAAAGTTGAGTGTAATTATCACATTGT CATTGGTCATTATCGTCATTCATTGTATGTGAGGGCGAAAATAGGAAAGAATTCAAGGAAGCAGTTAGAAGGGACTCACT GGAGGGTGTATTGTTGTTTTAAGTTTATTCCTAATGTCCATATGTAAAGGGTGCATATTATTCCAGTGATATATGTTAAA CTATTAGACTTGTTGAAGGGACAAGGAAGTCTGTTGGAGCAGTAATTAATTCCTTAGAAACCAATACATTTTGTAAATTC TTCCAACATCAAACCTAATGAATCTAATTCCACCCCATCCCCAATTTGGAGTTCTGGAATGGAACCAAACAAATTATTAT TTACCTATCTCCATACCATTCCATCATCTTACAAACCAGGAACAAAATGGTGAAATTACAGAGAGAGAGGAGAAACCAGA GAAGAGAGTCAGAGAAGGTAGAATAGAACACTTCTGTGATGATAAAGTGAGTGACAAACTGAGAAACAATGAAATTCTTG GTGTAAGGGTTTTCCTCTTTAACAACTGAGCTAATGTCGGCTCTTCAATACTATTCAAAAGGAATTTTCTATTCCTCTCC TGCTGTGTAAGCTAATTACCTTAGCAATTCTGCAATTAAACTAACTTCATCACCTAATTCCTTAACTAACTAATTATGTA AGCACTTTATCTGCTTTGTCTCCACAACTTTCGTTCTTGTATCCTCAGTCCTATACTCCTATGTTGTTCACTTCCTGCAC AATAGAGTGGAGCCTTTCGTTCTTGTATCCTCAGTCCTATGATGTTCACTTCCCGAACAATAGAATGCAAACTTTCCCTA ATTTCATCATATGATGTCCAAATAATATTATAAAAACTTTATTCCATGTCTATAGCCAGTTATATACTGTAGTGTATACT TATACTTATGTGGTGATCTTCTTCCAGCTTGTGATTTTGTATCTTTGATGTTTTGTTAACTGATGCAAACTTCCATCTAT GACACAGTTACCTCCAATATTTTGACTGACATGCATGTAAATGATCATGTATGTCAGTCAATGAAAAAGGAAAATATTTT AGGGTATCATGATCCGTTGATCCCCTTTTGGCAGACCTTGAGAAACTACTCTGTTTCTTTTCATTTATGAATGTTTATGT GACTCTTGTTTCTGTATCTGTAGCTTTCTATGATTCCCTCTGTTCTTGTGTTAAAATTTTAATAATGTTTAAGAACAAAA GTTATTCATACAACTATTAATTTGCTAGGCAGTAATTTTACAACCACTTGGAGATAAAGGAATTGCAATTATTGGTGGTG ACACAATACGAGGTTTTACTACTTCTGATCAGGTACATTTCAGCTTTCTTTCTCGTTTCCGTGAGACAAGTCAATTTGTC ATGAAGCAAGCTTTCATTTCAGCTTTCAAGTCAACTTAGAACCCTAATTTTGAACTCTGTCATGCATATATTTGTGGGTT AATGATTGAAGTATTGAAATGATTACAGGCATGGATTACATTCATAGGAGACAAGTTGGATTCTACCCTTGCAAAACATG TAAAGCATCTTCGTCTTACTTCCCCAGAATAAGTTTCAAAGATTTGCAAGGTAGCCTCTGATTGTTGTTAATTCCTGATT TCAGTGTAATAAATCCTAGAACCTTCAGCTGAGTTCTTCAGGATACGTTGTTCATATTAGTCCCATGTATGTATCTTTCA TCCATTTCATATGGCAGTACTTAATACCAGACTAATTTATTGTTAAGAATAGTAAATTGTATAAATCAGCACATTTTTGT CAGACTATGTGCGAAATGTAATTGGTTTATTTTAGAAAATTGATTACTTTTGTCAGTTTTTTTTTGGTATTTGATGGTTC AGAAAACTGTGGCAGTTTCTCATAACAGATGACATTCTCGGAGTT
CDS sequence (LotjaGi2g1v0311900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCGGGAACTGCGTTCCGTGTCGTGGGTGTTGTCACTGTCAACACTCACATTCCCATTCCCATTTTCAAGAAATC CAAAACCACCGCATTCCAATCTCGCTTCTTCACTTGTTCATCTCCCTCTCCTTCTTCCACTAGTTACCGAGGTCCCAAAC CCAAACGCGATTTCCTCGCCGATTGGGTTTCCCAAAACGACGACGTCGTTCGCACCTTACCGATCTACGTCGGCTCCGCC TCCCTCTTCGCCGTCCTCTTCAATCGCGCCATTTCCGGCATCGCCCCCGTCGCCGACGCCGGCAGTTCACAATCCAGAGC TGACCTCTTGACTTTAGGATTGGCAGTCACCAATATTTTGGCTGGCCTTGTTTGGCTCTCCATAAGACCCAAATCTATAG CTGTGGTAAATCCTCAAGGGGTTCAATGCAGGAGGTTGTGCACTGCTCTCCCTCATGTTGCACTTACTGAGCTGCTCTGG GTATGGGAATCTCTATCAGATATCACCTGCTGCCGATCACTTGTTATTGTTTATGAGAGCAGTTGTGTACTTCAAATTGG TTTTGCTGCAGAGTCTTCTTCCGGGGATGGTGAGGCTGTAAGTGTGGACATTAATAAATTGATCCAAGGATCAGTATACC AGGGTGTAATGAAATCTGGAGCCCAGAGTTACTTGGCTAATCTATCTCTTTATCCTGGGAAATCTGAGCTGTCATTTCTA CCTTCAAATACTCAGGCAGTAATTTTACAACCACTTGGAGATAAAGGAATTGCAATTATTGGTGGTGACACAATACGAGG TTTTACTACTTCTGATCAGGCATGGATTACATTCATAGGAGACAAGTTGGATTCTACCCTTGCAAAACATGTAAAGCATC TTCGTCTTACTTCCCCAGAATAA
Protein sequence (LotjaGi2g1v0311900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAGTAFRVVGVVTVNTHIPIPIFKKSKTTAFQSRFFTCSSPSPSSTSYRGPKPKRDFLADWVSQNDDVVRTLPIYVGSA SLFAVLFNRAISGIAPVADAGSSQSRADLLTLGLAVTNILAGLVWLSIRPKSIAVVNPQGVQCRRLCTALPHVALTELLW VWESLSDITCCRSLVIVYESSCVLQIGFAAESSSGDGEAVSVDINKLIQGSVYQGVMKSGAQSYLANLSLYPGKSELSFL PSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQAWITFIGDKLDSTLAKHVKHLRLTSPE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 74 | 74 | - | – | |
| PANTHER | 1 | 295 | 295 | 1.3E-144 | – | |
| PANTHER | 1 | 295 | 295 | 1.3E-144 | – | |
| Pfam | 73 | 283 | 211 | 8.5E-59 | ||
| Phobius | 75 | 97 | 23 | - | – | |
| Phobius | 98 | 108 | 11 | - | – | |
| Phobius | 109 | 128 | 20 | - | – | |
| Phobius | 129 | 300 | 172 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0311900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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