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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0313300 |
| Transcript ID | LotjaGi2g1v0313300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Inositol-1,4,5-trisphosphate 5-phosphatase 4 isoform 1; TAIR: AT1G70160.1 zinc finger MYND domain protein; Swiss-Prot: sp|Q9FNM7|RH26_ARATH DEAD-box ATP-dependent RNA helicase 26; TrEMBL-Plants: tr|A0A151TFU7|A0A151TFU7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0313300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78815594..78819192) extracted from Lotus japonicus Gifu genome v1.2.
CCGCCGCCTCCACCCAAACCAGATGGACCAAACCCCCTGAAATCCCCAAACTCCATGTCTCCCTTTCCTCTCCTCTTCCT CCTCCTCTCGATTCTACCGCTATCACTCGCTCTCAAGGTCCCCTTCAGAGTCAACGATGTTCTCCCTGTTCTCCCCCGCA GTATCTCGTGGCCCGTCCTCAACAATTTCCACAGCGCCGTTGATTTGCTTCCGTCTTTCGTTGGCTCCGTGACTCCTGAT AACGCTACTGTTGAGTGGAAGGGTGCTTGCTTTTATGATAATGAAGCCAGGCTTGAGTTCACCGCCGGTGATCGGAATGA TTCTGCCTTAGGGGGTGCCGTTCTCTATCTCAAGGTTTTTCACTTTCTATTTTTGGTTTCATCATCTTGTGTAAATTGTT TGCTATTGATGATGATTGAACTAGTCGAGTGAAGTTTCTATTTTAGTCAAGTCATTCCCAATTTTGATTTTTTCCTAAAA TTACAAAAATGTTAATAACTGAGATTGTGGGAGGGATTTACTGAGTTTTCACTTTTTAATAGTAAGAGATCAGGGGTGTT AATGGCGGATAGCGCAGTGTAGCAGCAAGCCCAAAAAACACTATTTCGAGCTCTATTACGGCAAATAGTGGAGTAGCGGT GAACCCCATGGCGCTACCCTATAGCGCGCTATGAACAAGCCTAAAGAGATTACTAAAAGATTACTCCCATTTCGGATAGT AGTTAAGAATATATCAATTGAAGTGCTATTACTTTATGCATGTGATGAATCCTTATTACTTGTGTAACTACTGGTAGTGG TACCTTCGTGCCTTTCGCGGAACTGTAAATTCGGTGCAAACGTATATTTTCCTTTCTCTATCTGAGTTTTCTTGATACCT TATAGGTTGATATAGGCAATAGATAGGTATAGCTTTTGGTTGGATTGGTTAATGAGAGATTTAAGTATCTGTCTTCTATT ATCCTATACTCCGCTTGCTATACAATATGGCTTTGTAAATTTTTTCATTTGTTTTTTGTCTTTTTTTGCTTTGCTGAAAA GATATTATTATCTGGTCCTTTACAGACAGAGGATGCACACAGCTGGTCCTGCATGGATCTGTATGTTTTTGCGACGCCGT ACAGGATTACATGGGACTACTACTTTGCTGCACGAGAGCATACCTTGAAGTTTGATTCGTGGGAAGAGCCTGCAGAGTTG GAATATGTATTCTTCTTTTTGTTGGTTTTCTGTTCTGTTTGAATCTTTTTATTGGAGAAACCCAGCGACAGAAAGATAAT ATTCTCACAAAATTGTACAGGTAAAGCAGCACGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGTACGCTGCTT TCTCTAGTTGATGTTTTGCCTCTATTCTCTAACACTGCTTGGGGTCAGAATGCCAACTTAGATTTCCTAAAGAAACACAT GGGAGCTACATTTGAGAAACGCAGTCAGCCTTGGCGTGCAAATATTGATCCTGCAGATGTTCATTCCGGAGACTTTTTAG CTGTGTCAAAGATCCGTGGTAGGTGGGGAGGTTTTGAGACACTAGAAAAGTGGGTAACTGGTGCATTTGCTGGTCATACA GCGGTTTGCTTGAAGGATGAAATGGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAAAAGGTATAAAGAAGAAT CTTATACTCTTTTTCTACAACACTCACACGTACTCATTTATACATGTGAAAAGTTCTTTACCAAATTCAATTTGTTTTAA AACGTTCCGAACTTCATATTACCAATTTACCATCATTTAGTGCCTAGTAAACAGTGAACTTCGTATTTGACTCATAGTTG CTGAGGGTATTCACTGATCTCCATCCACTTTGTACTGAATATAACTTAACTCGATGACCTGTCTTTGTGCAGGGTGAAGA AATAATAGTGGTAATTCCATGGCATGAATGGTGGGAGTTGGCTCTTAAAGATGGCTCGAACCCTCAGATAGCCTTGCTTC CCCTGCATCCGGAGTTGCGTGCAAAATTCAACTCTACTGCAGCATGGGAGTATGCGCGGAGCATGTCTGGCAAGCCATAT GGTTATCACAATATGATATTCAGTTGGATTGACACAGCAGCTGACAACTATCCTCCACCTCTTGATGCTCACTTGGTATT AATCCTTTCCTTATTTGTGTAAAGAGTAACACCACTATGCAAGAAAAAAGGTTCGCAGGTTCTCCCCTGTGTTTCTGTAA TACTGAACTTCTAAGCAATGAATCAACTAATCTCAACCCTTCATTTATCCTGTGGGTCTCAAATACAAAAGAAACATATA TGGCATACTCTCTTGTTGATATTGTAGGCTCTGATTTTCCACGAGTAGTCTGTTTGAATGACATGTTCTTTGCAGGTAAC TTCTGTCATGTCTATGTGGACAAGAATGCAGCCAGCTTATGCTGCAAACATGTGGAATGAAGCGCTGAATAAGCGGTTAG GGACTGAGGTATATTTTATTTTACTCTTTTACCATATAAAGACATTTACATGTATATATTATCTTGTATAACATTTTACC TATTTTTTAGTCAAATTGTTCCCTTTTACCTTGTGTGGAACAATTCTCAGCCAGAACAAGTAGTGGACATAGGTTTAACT TGTAAATGACCTCGCAGTTTATCTGGTGCTATTTTAACATTGATGGCAAGACAAATTACAAAAGATTTGAGATAAAACTT CTGTATGGTTTTTTAAATTTTTTTATTTAGGATTTCCTTTTCATATTGCTTGTAAAATTGGTCTCTAAGGTCTCTTCTGT TGAAACCTTGACTTTGTTACAATATGGAAGTTTTTTTTGTCAAATGTGAATTTTTTTCCAAGTCATGAGTTCATTGATGG TAAATACTATATTCTAGCTTATATATAAATTTCTTAAAGTTTATGTATTGCTTGTACTAAGCATCAAATGGTTAAATAGT TCCCATCCCAAATTCCATTGAATATGTAAGTCTTAAATTATATTTTATCCATTGCAGGAACTCCAAGAGCATATTATTAT TTATCATGAACTGCTGACAAATTTACATTTCGTGGGATCTCATTTCTTTGTGCTTTCAGGGTTTAGATTTACATGATATT CTAGTTGAGACAGAGAAACGTGGGATTACTTTTGATGAATTGCTTACCATTCCTGAACAAGATGAATGGGTATACAGTGA TGGGAAGTCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGAGGCTGGAATCTTTGGTCCCATTTCTAGCTCAA TTCAAGTAACTGAATTCACAGTAAGCCATATGTTTGCCTTGGTTATTGGATTAACCTCCGGTCGTCATAATTGCTCCTCC TTATGTTTCTATGTTGTTATTTGCAGATTCGTGATGCATACATGCTTAGAATATTTGAGGATAACCAAACGCGCCTACCA AGATGGTGCAACAATGAGAATGACGGGCTTCCATTCTGCCAGATTCTTGGTGAATACAGGATGGAATTGCCTGGCTATAA CACGTTGGATCCATATCCTAATATGAACGAGCACTGTCCTTCCCTTCCTCCCACTTATGATAGGCCTTCACAATGTTAG
CDS sequence (LotjaGi2g1v0313300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCCTTTCCTCTCCTCTTCCTCCTCCTCTCGATTCTACCGCTATCACTCGCTCTCAAGGTCCCCTTCAGAGTCAA CGATGTTCTCCCTGTTCTCCCCCGCAGTATCTCGTGGCCCGTCCTCAACAATTTCCACAGCGCCGTTGATTTGCTTCCGT CTTTCGTTGGCTCCGTGACTCCTGATAACGCTACTGTTGAGTGGAAGGGTGCTTGCTTTTATGATAATGAAGCCAGGCTT GAGTTCACCGCCGGTGATCGGAATGATTCTGCCTTAGGGGGTGCCACAGAGGATGCACACAGCTGGTCCTGCATGGATCT GTATGTTTTTGCGACGCCGTACAGGATTACATGGGACTACTACTTTGCTGCACGAGAGCATACCTTGAAGTTTGATTCGT GGGAAGAGCCTGCAGAGTTGGAATATGTAAAGCAGCACGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGTACG CTGCTTTCTCTAGTTGATGTTTTGCCTCTATTCTCTAACACTGCTTGGGGTCAGAATGCCAACTTAGATTTCCTAAAGAA ACACATGGGAGCTACATTTGAGAAACGCAGTCAGCCTTGGCGTGCAAATATTGATCCTGCAGATGTTCATTCCGGAGACT TTTTAGCTGTGTCAAAGATCCGTGGTAGGTGGGGAGGTTTTGAGACACTAGAAAAGTGGGTAACTGGTGCATTTGCTGGT CATACAGCGGTTTGCTTGAAGGATGAAATGGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAAAAGGGTGAAGA AATAATAGTGGTAATTCCATGGCATGAATGGTGGGAGTTGGCTCTTAAAGATGGCTCGAACCCTCAGATAGCCTTGCTTC CCCTGCATCCGGAGTTGCGTGCAAAATTCAACTCTACTGCAGCATGGGAGTATGCGCGGAGCATGTCTGGCAAGCCATAT GGTTATCACAATATGATATTCAGTTGGATTGACACAGCAGCTGACAACTATCCTCCACCTCTTGATGCTCACTTGGTAAC TTCTGTCATGTCTATGTGGACAAGAATGCAGCCAGCTTATGCTGCAAACATGTGGAATGAAGCGCTGAATAAGCGGTTAG GGACTGAGGGTTTAGATTTACATGATATTCTAGTTGAGACAGAGAAACGTGGGATTACTTTTGATGAATTGCTTACCATT CCTGAACAAGATGAATGGGTATACAGTGATGGGAAGTCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGAGGC TGGAATCTTTGGTCCCATTTCTAGCTCAATTCAAGTAACTGAATTCACAATTCGTGATGCATACATGCTTAGAATATTTG AGGATAACCAAACGCGCCTACCAAGATGGTGCAACAATGAGAATGACGGGCTTCCATTCTGCCAGATTCTTGGTGAATAC AGGATGGAATTGCCTGGCTATAACACGTTGGATCCATATCCTAATATGAACGAGCACTGTCCTTCCCTTCCTCCCACTTA TGATAGGCCTTCACAATGTTAG
Protein sequence (LotjaGi2g1v0313300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPFPLLFLLLSILPLSLALKVPFRVNDVLPVLPRSISWPVLNNFHSAVDLLPSFVGSVTPDNATVEWKGACFYDNEARL EFTAGDRNDSALGGATEDAHSWSCMDLYVFATPYRITWDYYFAAREHTLKFDSWEEPAELEYVKQHGVSVFLMPSGMLGT LLSLVDVLPLFSNTAWGQNANLDFLKKHMGATFEKRSQPWRANIDPADVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAG HTAVCLKDEMGNLWVGESGHENEKGEEIIVVIPWHEWWELALKDGSNPQIALLPLHPELRAKFNSTAAWEYARSMSGKPY GYHNMIFSWIDTAADNYPPPLDAHLVTSVMSMWTRMQPAYAANMWNEALNKRLGTEGLDLHDILVETEKRGITFDELLTI PEQDEWVYSDGKSTTCVAFILSMYKEAGIFGPISSSIQVTEFTIRDAYMLRIFEDNQTRLPRWCNNENDGLPFCQILGEY RMELPGYNTLDPYPNMNEHCPSLPPTYDRPSQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| PANTHER | 16 | 513 | 498 | 0.0 | – | |
| PANTHER | 16 | 513 | 498 | 0.0 | – | |
| Phobius | 20 | 513 | 494 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0313300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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