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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0316900 |
Transcript ID | LotjaGi2g1v0316900.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|G7K2T6|G7K2T6_MEDTR Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein; Found in the gene: LotjaGi2g1v0316900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79218401..79220224) extracted from Lotus japonicus Gifu genome v1.2.
CAACTTTATATAGAAAGAGAATCTCTTCTCCTCAGAACACAGTACCACACACAAAAGAGATCATACTTAGCAGAAAATAA AGAAGGAGGGAATGGAGGCCTTCATCAAAATGAGAAGTGCAGAAGCATTCAAATTCCAATCCCTCTCCCTCATCTGGAGA CTTATTCCCTGCACATTCCTATCACTACTTTGTTTATACTTCTACCCTCACTTCAATCATCCATCTCCACCAACTGATCA ACGTCATCATTCCTACCCCTCCTTTCTATCTGCTCCTCTCCTTTCTCCTCCTCTTTCTTATTCAGGTATATATACACATA TATGTATGCATATTATTTTTCAGACCCAATTCGTGCACACCCATGTACACCTTTTTCTATTCTCTTAATCCCTTTTTTCA TGTCACATCGATCACATATAACATCTATTACTTTTCTATTTCCCGTTTATATCTTTAGGTGTCTACATGAAACATTGTTG ATGTTTTTTTGTCTAGGTAACACTGTTATAAACTTATAATGGTAGAACTGCGTGCATGTGGTCTTTTTCTGAACTTATTA AGTTAATTAGCAGGTGTTTTATTGGCAGAAAATGACAAAGGTTACAAGAGACAATGTGATTACTTTAACGGCAAATGGGT TCCTGATAGCAGAGGCCCTTTGTATAATGGTACAACTTGTGGTACGATCCAAAAAAGCCTCAATTGCATCACCAATGGCA GGCCAGACTCTGAATATCTTTATTGGAGATGGAAACCAAGGAGGTGCAATCTTCCAAGGTTTGAACAAGAGACTTTTCTC CAACTCATTGAGAACAAGCATATAGCTTTTGTTGGGGATTCTCTAGCTAGGAACCAATTAGAGTCCCTTCTTTGCATGTT AGCCCCTGCTTCAACACCTAAACTTGACCTCTCTAAAGGTTTAGGTTGGTGGCATTTTCCTTCTCACAATGCAACCTTAT CATTATATTGGGCCCCATTTCTTGTGCAAGGTGTTGAAAGACAACTCAAAGGGCACGGGCAACGTCACAATACAATGTTT TTGGATCAAGTCAATGAGAGTTGGGCTATGGATATGAATCAAATGGATTTAATTGTGCTTGGATTTGGAAATTGGTTTGT AAACATTCCTTCTGTTTACTATGAGGGCGGTTCAGTTTTGGGTTGTCAGAACTTTCCTAATCATAATTGCACTGATATTG GGTATTATGTCCCAATAAGAAAGGCTTTAAGGACTGCTCTTAATAGCATAATTGAAAGGAAAGCAGCCAAAGGAAATGGA GGTGGTGTCATTGTGAGAACATACTCACCTTTTCACTTTAAAGGTAGTTGGGATAAGGGCGGTATTTGTTCAATGACTAA ATTTTATCAAAAAGAGGAGAAGATACTTGAACAAAGGGATGCTGAGATTAGAAAGATTGGATTGGAAGAATTGAAAAATG CTAAGGAAAAGGCCAATAAAAATTTTAGAAAGTTTAGGTTCGAGGTGCTAGATGTAACCAAATTAGCATCAATGAGACCG GACGGGCATCCAGGTGCTTATAGGAAACCATTCTCATTTGCGAAAGGGGCCGTAAAGAACGCGCGAAATGATTGTACTCA TTGGTGCTTGCCGGGGCCTATAGACACCTGGAATGAGATTTTTCTTGAGATGATGAAGAAGTGGAAAGAATAGCTCTTTT TTTTTTTGAGATGTGGGAGGAATAGCTAATGAGTGAGGCATTCCTCCTATCTTTTTGTAATTAATTTATGAACAACTTCT TGTTATCGTTACTAGTTACTAGTTATATGCTTATAAAAAAAAAATCGTTACTAGTTATAGTTGC
CDS sequence (LotjaGi2g1v0316900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGCCCCTGCTTCAACACCTAAACTTGACCTCTCTAAAGGTTTAGGTTGGTGGCATTTTCCTTCTCACAATGCAAC CTTATCATTATATTGGGCCCCATTTCTTGTGCAAGGTGTTGAAAGACAACTCAAAGGGCACGGGCAACGTCACAATACAA TGTTTTTGGATCAAGTCAATGAGAGTTGGGCTATGGATATGAATCAAATGGATTTAATTGTGCTTGGATTTGGAAATTGG TTTGTAAACATTCCTTCTGTTTACTATGAGGGCGGTTCAGTTTTGGGTTGTCAGAACTTTCCTAATCATAATTGCACTGA TATTGGGTATTATGTCCCAATAAGAAAGGCTTTAAGGACTGCTCTTAATAGCATAATTGAAAGGAAAGCAGCCAAAGGAA ATGGAGGTGGTGTCATTGTGAGAACATACTCACCTTTTCACTTTAAAGGTAGTTGGGATAAGGGCGGTATTTGTTCAATG ACTAAATTTTATCAAAAAGAGGAGAAGATACTTGAACAAAGGGATGCTGAGATTAGAAAGATTGGATTGGAAGAATTGAA AAATGCTAAGGAAAAGGCCAATAAAAATTTTAGAAAGTTTAGGTTCGAGGTGCTAGATGTAACCAAATTAGCATCAATGA GACCGGACGGGCATCCAGGTGCTTATAGGAAACCATTCTCATTTGCGAAAGGGGCCGTAAAGAACGCGCGAAATGATTGT ACTCATTGGTGCTTGCCGGGGCCTATAGACACCTGGAATGAGATTTTTCTTGAGATGATGAAGAAGTGGAAAGAATAG
Protein sequence (LotjaGi2g1v0316900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAPASTPKLDLSKGLGWWHFPSHNATLSLYWAPFLVQGVERQLKGHGQRHNTMFLDQVNESWAMDMNQMDLIVLGFGNW FVNIPSVYYEGGSVLGCQNFPNHNCTDIGYYVPIRKALRTALNSIIERKAAKGNGGGVIVRTYSPFHFKGSWDKGGICSM TKFYQKEEKILEQRDAEIRKIGLEELKNAKEKANKNFRKFRFEVLDVTKLASMRPDGHPGAYRKPFSFAKGAVKNARNDC THWCLPGPIDTWNEIFLEMMKKWKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 263 | 262 | 8.6E-110 | – | |
PANTHER | 2 | 263 | 262 | 8.6E-110 | ||
Pfam | 13 | 259 | 247 | 7.5E-62 | ||
Coils | 183 | 203 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0316900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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