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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0316900 |
Transcript ID | LotjaGi2g1v0316900.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|I1J5C7|I1J5C7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0316900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79218417..79220224) extracted from Lotus japonicus Gifu genome v1.2.
CAACTTTATATAGAAAGAGAATCTCTTCTCCTCAGAACACAGTACCACACACAAAAGAGATCATACTTAGCAGAAAATAA AGAAGGAGGGAATGGAGGCCTTCATCAAAATGAGAAGTGCAGAAGCATTCAAATTCCAATCCCTCTCCCTCATCTGGAGA CTTATTCCCTGCACATTCCTATCACTACTTTGTTTATACTTCTACCCTCACTTCAATCATCCATCTCCACCAACTGATCA ACGTCATCATTCCTACCCCTCCTTTCTATCTGCTCCTCTCCTTTCTCCTCCTCTTTCTTATTCAGGTATATATACACATA TATGTATGCATATTATTTTTCAGACCCAATTCGTGCACACCCATGTACACCTTTTTCTATTCTCTTAATCCCTTTTTTCA TGTCACATCGATCACATATAACATCTATTACTTTTCTATTTCCCGTTTATATCTTTAGGTGTCTACATGAAACATTGTTG ATGTTTTTTTGTCTAGGTAACACTGTTATAAACTTATAATGGTAGAACTGCGTGCATGTGGTCTTTTTCTGAACTTATTA AGTTAATTAGCAGGTGTTTTATTGGCAGAAAATGACAAAGGTTACAAGAGACAATGTGATTACTTTAACGGCAAATGGGT TCCTGATAGCAGAGGCCCTTTGTATAATGGTACAACTTGTGGTACGATCCAAAAAAGCCTCAATTGCATCACCAATGGCA GGCCAGACTCTGAATATCTTTATTGGAGATGGAAACCAAGGAGGTGCAATCTTCCAAGGTTTGAACAAGAGACTTTTCTC CAACTCATTGAGAACAAGCATATAGCTTTTGTTGGGGATTCTCTAGCTAGGAACCAATTAGAGTCCCTTCTTTGCATGTT AGCCCCTGCTTCAACACCTAAACTTGACCTCTCTAAAGGTTTAGGTTGGTGGCATTTTCCTTCTCACAATGCAACCTTAT CATTATATTGGGCCCCATTTCTTGTGCAAGGTGTTGAAAGACAACTCAAAGGGCACGGGCAACGTCACAATACAATGTTT TTGGATCAAGTCAATGAGAGTTGGGCTATGGATATGAATCAAATGGATTTAATTGTGCTTGGATTTGGAAATTGGTTTGT AAACATTCCTTCTGTTTACTATGAGGGCGGTTCAGTTTTGGGTTGTCAGAACTTTCCTAATCATAATTGCACTGATATTG GGTATTATGTCCCAATAAGAAAGGCTTTAAGGACTGCTCTTAATAGCATAATTGAAAGGAAAGCAGCCAAAGGAAATGGA GGTGGTGTCATTGTGAGAACATACTCACCTTTTCACTTTAAAGGTAGTTGGGATAAGGGCGGTATTTGTTCAATGACTAA ATTTTATCAAAAAGAGGAGAAGATACTTGAACAAAGGGATGCTGAGATTAGAAAGATTGGATTGGAAGAATTGAAAAATG CTAAGGAAAAGGCCAATAAAAATTTTAGAAAGTTTAGGTTCGAGGTGCTAGATGTAACCAAATTAGCATCAATGAGACCG GACGGGCATCCAGGTGCTTATAGGAAACCATTCTCATTTGCGAAAGGGGCCGTAAAGAACGCGCGAAATGATTGTACTCA TTGGTGCTTGCCGGGGCCTATAGACACCTGGAATGAGATTTTTCTTGAGATGATGAAGAAGTGGAAAGAATAGCTCTTTT TTTTTTTGAGATGTGGGAGGAATAGCTAATGAGTGAGGCATTCCTCCTATCTTTTTGTAATTAATTTATGAACAACTTCT TGTTATCGTTACTAGTTACTAGTTATATGCTTATAAAAAAAAAATCGT
CDS sequence (LotjaGi2g1v0316900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCCTTCATCAAAATGAGAAGTGCAGAAGCATTCAAATTCCAATCCCTCTCCCTCATCTGGAGACTTATTCCCTG CACATTCCTATCACTACTTTGTTTATACTTCTACCCTCACTTCAATCATCCATCTCCACCAACTGATCAACGTCATCATT CCTACCCCTCCTTTCTATCTGCTCCTCTCCTTTCTCCTCCTCTTTCTTATTCAGGTGTTTTATTGGCAGAAAATGACAAA GGTTACAAGAGACAATGTGATTACTTTAACGGCAAATGGGTTCCTGATAGCAGAGGCCCTTTGTATAATGGTACAACTTG TGGTACGATCCAAAAAAGCCTCAATTGCATCACCAATGGCAGGCCAGACTCTGAATATCTTTATTGGAGATGGAAACCAA GGAGGTGCAATCTTCCAAGGTTTGAACAAGAGACTTTTCTCCAACTCATTGAGAACAAGCATATAGCTTTTGTTGGGGAT TCTCTAGCTAGGAACCAATTAGAGTCCCTTCTTTGCATGTTAGCCCCTGCTTCAACACCTAAACTTGACCTCTCTAAAGG TTTAGGTTGGTGGCATTTTCCTTCTCACAATGCAACCTTATCATTATATTGGGCCCCATTTCTTGTGCAAGGTGTTGAAA GACAACTCAAAGGGCACGGGCAACGTCACAATACAATGTTTTTGGATCAAGTCAATGAGAGTTGGGCTATGGATATGAAT CAAATGGATTTAATTGTGCTTGGATTTGGAAATTGGTTTGTAAACATTCCTTCTGTTTACTATGAGGGCGGTTCAGTTTT GGGTTGTCAGAACTTTCCTAATCATAATTGCACTGATATTGGGTATTATGTCCCAATAAGAAAGGCTTTAAGGACTGCTC TTAATAGCATAATTGAAAGGAAAGCAGCCAAAGGAAATGGAGGTGGTGTCATTGTGAGAACATACTCACCTTTTCACTTT AAAGGTAGTTGGGATAAGGGCGGTATTTGTTCAATGACTAAATTTTATCAAAAAGAGGAGAAGATACTTGAACAAAGGGA TGCTGAGATTAGAAAGATTGGATTGGAAGAATTGAAAAATGCTAAGGAAAAGGCCAATAAAAATTTTAGAAAGTTTAGGT TCGAGGTGCTAGATGTAACCAAATTAGCATCAATGAGACCGGACGGGCATCCAGGTGCTTATAGGAAACCATTCTCATTT GCGAAAGGGGCCGTAAAGAACGCGCGAAATGATTGTACTCATTGGTGCTTGCCGGGGCCTATAGACACCTGGAATGAGAT TTTTCTTGAGATGATGAAGAAGTGGAAAGAATAG
Protein sequence (LotjaGi2g1v0316900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAFIKMRSAEAFKFQSLSLIWRLIPCTFLSLLCLYFYPHFNHPSPPTDQRHHSYPSFLSAPLLSPPLSYSGVLLAENDK GYKRQCDYFNGKWVPDSRGPLYNGTTCGTIQKSLNCITNGRPDSEYLYWRWKPRRCNLPRFEQETFLQLIENKHIAFVGD SLARNQLESLLCMLAPASTPKLDLSKGLGWWHFPSHNATLSLYWAPFLVQGVERQLKGHGQRHNTMFLDQVNESWAMDMN QMDLIVLGFGNWFVNIPSVYYEGGSVLGCQNFPNHNCTDIGYYVPIRKALRTALNSIIERKAAKGNGGGVIVRTYSPFHF KGSWDKGGICSMTKFYQKEEKILEQRDAEIRKIGLEELKNAKEKANKNFRKFRFEVLDVTKLASMRPDGHPGAYRKPFSF AKGAVKNARNDCTHWCLPGPIDTWNEIFLEMMKKWKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
Phobius | 20 | 38 | 19 | - | – | |
TMHMM | 20 | 42 | 23 | - | – | |
Phobius | 39 | 57 | 19 | - | – | |
Phobius | 58 | 76 | 19 | - | – | |
PANTHER | 59 | 435 | 377 | 5.6E-169 | – | |
PANTHER | 59 | 435 | 377 | 5.6E-169 | ||
Phobius | 77 | 437 | 361 | - | – | |
Pfam | 85 | 137 | 53 | 9.0E-23 | ||
Pfam | 138 | 431 | 294 | 1.1E-81 | ||
Coils | 355 | 375 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0316900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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