Transcript — View — Lotus Base

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LotjaGi2g1v0325200.2

Overview

Field	Value
Gene ID	LotjaGi2g1v0325200
Transcript ID	LotjaGi2g1v0325200.2
Related isoforms 2	LotjaGi2g1v0325200.1 LotjaGi2g1v0325200.3
Lotus japonicus genome version	Gifu v1.2
Description	Phototropic-responsive NPH3 family protein; TAIR: AT1G67900.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp\|Q9C9V6\|Y1790_ARATH BTB/POZ domain-containing protein At1g67900; TrEMBL-Plants: tr\|G7JXS6\|G7JXS6_MEDTR Phototropic-responsive NPH3 family protein; Found in the gene: LotjaGi2g1v0325200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:80021835..80024553) extracted from Lotus japonicus Gifu genome v1.2.

TCTAATAGGATTAAGTGTATATCTTCTCTTTATTTGCAGGTCAGTGTCTTCTGAAGTTTGCAGTGACCTTATAATTCAAG TGAGGGGAACTAGATATCTTCTTCACAAGGTATGACAATGACAGAAACTCTTCAAGTTCTAATAATTTCAGTTCTATATC TATTTTCTATCAATTTTTACTTGTTGTTCTCATGTAAAAAATTATCTGAAGTTCATGCTGATGATGATGTACAGTTTCCC CTGCTATCAAAATGTCTGCGCCTGCAAAAGCTATGCTCAGAATCTCCTGATTCTTCTCCACACCAAATAGTCCAGCTACC TGATTTCCCTGGAGGGATTGAAGCATTTGAGCTTTGTGCCAAGTTCTGCTATGGAATCACCATCACTCTAAGCCCTTACA ACATTGTAGCTGCAAGGTGTTCTGCTGAGTATCTGCAAATGACCGAGGAGGTAGAGAAGGGGAACTTGATTCAAAAGCTT GATGTTTTCTTCAATTCATGCATCCTCCGTGGCTGGAAGGATTCTATAGTGAGTCTTCAAACCACAAAAGCATTGCATTT GTGGTCTGAAGACTTAGAAATTACAAGCAGATGCATTGAGGCTATTGCCTCAAAAGTTTTAAGCCACCCCACAAAGGTGA GTTTGTCTCATTCTCACTCCAGAAGGGTGAGGGATGATGTTTCATCTTGCAATGAGACTGAAAGTGTGAGACACAAATCA AACAAAGGATGGTGGGGTGAAGATTTAGCAGAATTGAGCATAGACCTTTATTGGAGAACCATGATAGCAATCAAATCTGG TGGTAAAGTTCCCTCAAATCTCATTGGAGATGCATTGAAAATCTATGCATCTAGATGGCTACCAAATATTACCAAGAATG GACATGTTAATAGAAAGCAAGTAGCTTCTGATAATTCTGACTTAGACTCAGCCAGTGAGATAACCTCAAAGCATCGTTTG CTTCTGGAATCAATAGTGAGCTTGCTTCCTGCAGAAAAAGGTGCTGTTTCTTGTAGCTTTCTTCTGAAGCTCTTGAAGGC ATCCAATATTCTCAATGCTTCTTCATCTTCAAAGATGGAGTTAGCAACAAGAGTAGGGCTTCAACTTGAGGAAGCAACCG GGAATGATCTTTTGATACCCTCACTGTCTTACACAAATGACACACTGTATGATGTTGAATTGGTGATGACCATATTGGAA CAGTTCATGGCACGAGGGCAGAGTCCCCCAACTAGTCCTCCAAGGTCTCTGATGACCTTTGAAAGAAGGAGGTCTCGTTC AGCAGAGAATATTAACTTTGAATTTCAGGAGAGTAGGAGATCCTCTTCAGCTTCTCACAGTTCAAAATTGAAGGTGGCAA AGCTTGTGGACAGGTATCTTCAAGAAATTGCAAGAGATGTAACTTTTTCCTTGTCCAAGTTCATTTCTCTTGCTGAAATT ATACCAGATTTTGCAAGACAAGACCATGATGATCTCTACAGAGCTATTGACATTTATCTCAAGGTAAAACTGTTTGTGTT TTCTAAATATTACTTCATTTTACTCTCAAGGTAACAAACATGTAAGAAAAAATAGTGGCTGAACACATTTCACTTTCACA TTTTAGGATGTGAGACAGAATTAGTGGATAACCAACTTTCTAGACCACAAAATGTTGTCTTATTCAAAACTGATTGGCAG TTAGGTGTAGACTGACCCACCATAAATTTAGCCCTGACTGAGTCCATGCTCTGACTGATGACATAGTTTCAGTATGTATT CAGGTTTTTGTGATTTCATTTGGCTAAAAACATGAAGATAAAATTGCCTGTCAGAGTTGTCATAGTGTTCCATCATATTA CTACAGTTATGTCCAGAAGATTGGAAAAAGAGGGAGAGGAGATGCATGTTCTTTATTCCTTCACATGATTGACAGTGTGT CTCCCCTATTTTCCAATTTTGACCATTTACAACCACTCCATTTAGCTAAATTCCACCTCAGAATTTCTTAAACGATGTAA CATGTGTGTGTTGAGAAGTCTCACATTAACTAGAAATATGACCATAATATTTCTTATAAATGTAGAGTAGCCATCACCCC TAGCTAGGTTTTAAGATAGAATTAGGCCTAACTCAAATTTTAAGTATCTCACTGTCAGTTCAGTAAAATTTCTGGCTTGC AGGGATGTTATATTTTACTTAAAATTCTGTGTTGTTTAATTGGAAAATCCAGGCTCATCCAGAACTCAACAAGAGTGAAA GGAAAAGACTATGTAGAATACTTGACTGCAAAAAACTGTCAATGGAAGCTTGTATGCATGCAGCACAAAATGAGTTACTC CCTCTAAGGGTTGTTGTGCAAGTTCTCTTCTTTGAGCAAGCTAGAGCAGCAGCAACTAATGGTGACAAAGTGTCTGATTT ACCAAGCAACATCAAGACATTGCTTACAGCACATGGAATTGACCCATCAAAACACACAGCACCCTTAAGCACTACCACAA GCATAAATGCTGAGGATAATTGGAGTGTTTCTGGCTTCAAGTCACCAAAGTCAAGGTCTTCAACTCTGAGGATGAAGTTA GCTGAGGATCATGATGATTTAGATGAAAATGGTTTAGCCAATGATGTGATTGGAAGAAATTCAAGATTTAGAGGAATCTG TGCTCTTCCTACACAACCCAAAAAAATGTTTAGCAAGTTGTGGTCTGCAAATAGAGCAGCAGCCACTGAAAAGAATTGA

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0325200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCGAGGAGGTAGAGAAGGGGAACTTGATTCAAAAGCTTGATGTTTTCTTCAATTCATGCATCCTCCGTGGCTGGAA GGATTCTATAGTGAGTCTTCAAACCACAAAAGCATTGCATTTGTGGTCTGAAGACTTAGAAATTACAAGCAGATGCATTG AGGCTATTGCCTCAAAAGTTTTAAGCCACCCCACAAAGGTGAGTTTGTCTCATTCTCACTCCAGAAGGGTGAGGGATGAT GTTTCATCTTGCAATGAGACTGAAAGTGTGAGACACAAATCAAACAAAGGATGGTGGGGTGAAGATTTAGCAGAATTGAG CATAGACCTTTATTGGAGAACCATGATAGCAATCAAATCTGGTGGTAAAGTTCCCTCAAATCTCATTGGAGATGCATTGA AAATCTATGCATCTAGATGGCTACCAAATATTACCAAGAATGGACATGTTAATAGAAAGCAAGTAGCTTCTGATAATTCT GACTTAGACTCAGCCAGTGAGATAACCTCAAAGCATCGTTTGCTTCTGGAATCAATAGTGAGCTTGCTTCCTGCAGAAAA AGGTGCTGTTTCTTGTAGCTTTCTTCTGAAGCTCTTGAAGGCATCCAATATTCTCAATGCTTCTTCATCTTCAAAGATGG AGTTAGCAACAAGAGTAGGGCTTCAACTTGAGGAAGCAACCGGGAATGATCTTTTGATACCCTCACTGTCTTACACAAAT GACACACTGTATGATGTTGAATTGGTGATGACCATATTGGAACAGTTCATGGCACGAGGGCAGAGTCCCCCAACTAGTCC TCCAAGGTCTCTGATGACCTTTGAAAGAAGGAGGTCTCGTTCAGCAGAGAATATTAACTTTGAATTTCAGGAGAGTAGGA GATCCTCTTCAGCTTCTCACAGTTCAAAATTGAAGGTGGCAAAGCTTGTGGACAGGTATCTTCAAGAAATTGCAAGAGAT GTAACTTTTTCCTTGTCCAAGTTCATTTCTCTTGCTGAAATTATACCAGATTTTGCAAGACAAGACCATGATGATCTCTA CAGAGCTATTGACATTTATCTCAAGGCTCATCCAGAACTCAACAAGAGTGAAAGGAAAAGACTATGTAGAATACTTGACT GCAAAAAACTGTCAATGGAAGCTTGTATGCATGCAGCACAAAATGAGTTACTCCCTCTAAGGGTTGTTGTGCAAGTTCTC TTCTTTGAGCAAGCTAGAGCAGCAGCAACTAATGGTGACAAAGTGTCTGATTTACCAAGCAACATCAAGACATTGCTTAC AGCACATGGAATTGACCCATCAAAACACACAGCACCCTTAAGCACTACCACAAGCATAAATGCTGAGGATAATTGGAGTG TTTCTGGCTTCAAGTCACCAAAGTCAAGGTCTTCAACTCTGAGGATGAAGTTAGCTGAGGATCATGATGATTTAGATGAA AATGGTTTAGCCAATGATGTGATTGGAAGAAATTCAAGATTTAGAGGAATCTGTGCTCTTCCTACACAACCCAAAAAAAT GTTTAGCAAGTTGTGGTCTGCAAATAGAGCAGCAGCCACTGAAAAGAATTGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0325200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTEEVEKGNLIQKLDVFFNSCILRGWKDSIVSLQTTKALHLWSEDLEITSRCIEAIASKVLSHPTKVSLSHSHSRRVRDD VSSCNETESVRHKSNKGWWGEDLAELSIDLYWRTMIAIKSGGKVPSNLIGDALKIYASRWLPNITKNGHVNRKQVASDNS DLDSASEITSKHRLLLESIVSLLPAEKGAVSCSFLLKLLKASNILNASSSSKMELATRVGLQLEEATGNDLLIPSLSYTN DTLYDVELVMTILEQFMARGQSPPTSPPRSLMTFERRRSRSAENINFEFQESRRSSSASHSSKLKVAKLVDRYLQEIARD VTFSLSKFISLAEIIPDFARQDHDDLYRAIDIYLKAHPELNKSERKRLCRILDCKKLSMEACMHAAQNELLPLRVVVQVL FFEQARAAATNGDKVSDLPSNIKTLLTAHGIDPSKHTAPLSTTTSINAEDNWSVSGFKSPKSRSSTLRMKLAEDHDDLDE NGLANDVIGRNSRFRGICALPTQPKKMFSKLWSANRAAATEKN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32370:SF12 View details on PTHR32370:SF12 Search for proteins/transripts with this domain View external data on PTHR32370:SF12	1	517	517	1.0E-205	–
PANTHER	PTHR32370 View details on PTHR32370 Search for proteins/transripts with this domain View external data on PTHR32370	1	517	517	1.0E-205	IPR043454 Show description in modal box View details on IPR043454 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51649 View details on PS51649 Search for proteins/transripts with this domain View external data on PS51649	97	406	310	92.473	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03000 View details on PF03000 Search for proteins/transripts with this domain View external data on PF03000	98	382	285	2.1E-97	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0325200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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