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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0325200 |
Transcript ID | LotjaGi2g1v0325200.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phototropic-responsive NPH3 family protein; TAIR: AT1G67900.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900; TrEMBL-Plants: tr|G7JXS6|G7JXS6_MEDTR Phototropic-responsive NPH3 family protein; Found in the gene: LotjaGi2g1v0325200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80021835..80024553) extracted from Lotus japonicus Gifu genome v1.2.
TCTAATAGGATTAAGTGTATATCTTCTCTTTATTTGCAGGTCAGTGTCTTCTGAAGTTTGCAGTGACCTTATAATTCAAG TGAGGGGAACTAGATATCTTCTTCACAAGGTATGACAATGACAGAAACTCTTCAAGTTCTAATAATTTCAGTTCTATATC TATTTTCTATCAATTTTTACTTGTTGTTCTCATGTAAAAAATTATCTGAAGTTCATGCTGATGATGATGTACAGTTTCCC CTGCTATCAAAATGTCTGCGCCTGCAAAAGCTATGCTCAGAATCTCCTGATTCTTCTCCACACCAAATAGTCCAGCTACC TGATTTCCCTGGAGGGATTGAAGCATTTGAGCTTTGTGCCAAGTTCTGCTATGGAATCACCATCACTCTAAGCCCTTACA ACATTGTAGCTGCAAGGTGTTCTGCTGAGTATCTGCAAATGACCGAGGAGGTAGAGAAGGGGAACTTGATTCAAAAGCTT GATGTTTTCTTCAATTCATGCATCCTCCGTGGCTGGAAGGATTCTATAGTGAGTCTTCAAACCACAAAAGCATTGCATTT GTGGTCTGAAGACTTAGAAATTACAAGCAGATGCATTGAGGCTATTGCCTCAAAAGTTTTAAGCCACCCCACAAAGGTGA GTTTGTCTCATTCTCACTCCAGAAGGGTGAGGGATGATGTTTCATCTTGCAATGAGACTGAAAGTGTGAGACACAAATCA AACAAAGGATGGTGGGGTGAAGATTTAGCAGAATTGAGCATAGACCTTTATTGGAGAACCATGATAGCAATCAAATCTGG TGGTAAAGTTCCCTCAAATCTCATTGGAGATGCATTGAAAATCTATGCATCTAGATGGCTACCAAATATTACCAAGAATG GACATGTTAATAGAAAGCAAGTAGCTTCTGATAATTCTGACTTAGACTCAGCCAGTGAGATAACCTCAAAGCATCGTTTG CTTCTGGAATCAATAGTGAGCTTGCTTCCTGCAGAAAAAGGTGCTGTTTCTTGTAGCTTTCTTCTGAAGCTCTTGAAGGC ATCCAATATTCTCAATGCTTCTTCATCTTCAAAGATGGAGTTAGCAACAAGAGTAGGGCTTCAACTTGAGGAAGCAACCG GGAATGATCTTTTGATACCCTCACTGTCTTACACAAATGACACACTGTATGATGTTGAATTGGTGATGACCATATTGGAA CAGTTCATGGCACGAGGGCAGAGTCCCCCAACTAGTCCTCCAAGGTCTCTGATGACCTTTGAAAGAAGGAGGTCTCGTTC AGCAGAGAATATTAACTTTGAATTTCAGGAGAGTAGGAGATCCTCTTCAGCTTCTCACAGTTCAAAATTGAAGGTGGCAA AGCTTGTGGACAGGTATCTTCAAGAAATTGCAAGAGATGTAACTTTTTCCTTGTCCAAGTTCATTTCTCTTGCTGAAATT ATACCAGATTTTGCAAGACAAGACCATGATGATCTCTACAGAGCTATTGACATTTATCTCAAGGTAAAACTGTTTGTGTT TTCTAAATATTACTTCATTTTACTCTCAAGGTAACAAACATGTAAGAAAAAATAGTGGCTGAACACATTTCACTTTCACA TTTTAGGATGTGAGACAGAATTAGTGGATAACCAACTTTCTAGACCACAAAATGTTGTCTTATTCAAAACTGATTGGCAG TTAGGTGTAGACTGACCCACCATAAATTTAGCCCTGACTGAGTCCATGCTCTGACTGATGACATAGTTTCAGTATGTATT CAGGTTTTTGTGATTTCATTTGGCTAAAAACATGAAGATAAAATTGCCTGTCAGAGTTGTCATAGTGTTCCATCATATTA CTACAGTTATGTCCAGAAGATTGGAAAAAGAGGGAGAGGAGATGCATGTTCTTTATTCCTTCACATGATTGACAGTGTGT CTCCCCTATTTTCCAATTTTGACCATTTACAACCACTCCATTTAGCTAAATTCCACCTCAGAATTTCTTAAACGATGTAA CATGTGTGTGTTGAGAAGTCTCACATTAACTAGAAATATGACCATAATATTTCTTATAAATGTAGAGTAGCCATCACCCC TAGCTAGGTTTTAAGATAGAATTAGGCCTAACTCAAATTTTAAGTATCTCACTGTCAGTTCAGTAAAATTTCTGGCTTGC AGGGATGTTATATTTTACTTAAAATTCTGTGTTGTTTAATTGGAAAATCCAGGCTCATCCAGAACTCAACAAGAGTGAAA GGAAAAGACTATGTAGAATACTTGACTGCAAAAAACTGTCAATGGAAGCTTGTATGCATGCAGCACAAAATGAGTTACTC CCTCTAAGGGTTGTTGTGCAAGTTCTCTTCTTTGAGCAAGCTAGAGCAGCAGCAACTAATGGTGACAAAGTGTCTGATTT ACCAAGCAACATCAAGACATTGCTTACAGCACATGGAATTGACCCATCAAAACACACAGCACCCTTAAGCACTACCACAA GCATAAATGCTGAGGATAATTGGAGTGTTTCTGGCTTCAAGTCACCAAAGTCAAGGTCTTCAACTCTGAGGATGAAGTTA GCTGAGGATCATGATGATTTAGATGAAAATGGTTTAGCCAATGATGTGATTGGAAGAAATTCAAGATTTAGAGGAATCTG TGCTCTTCCTACACAACCCAAAAAAATGTTTAGCAAGTTGTGGTCTGCAAATAGAGCAGCAGCCACTGAAAAGAATTGA
CDS sequence (LotjaGi2g1v0325200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGAGGAGGTAGAGAAGGGGAACTTGATTCAAAAGCTTGATGTTTTCTTCAATTCATGCATCCTCCGTGGCTGGAA GGATTCTATAGTGAGTCTTCAAACCACAAAAGCATTGCATTTGTGGTCTGAAGACTTAGAAATTACAAGCAGATGCATTG AGGCTATTGCCTCAAAAGTTTTAAGCCACCCCACAAAGGTGAGTTTGTCTCATTCTCACTCCAGAAGGGTGAGGGATGAT GTTTCATCTTGCAATGAGACTGAAAGTGTGAGACACAAATCAAACAAAGGATGGTGGGGTGAAGATTTAGCAGAATTGAG CATAGACCTTTATTGGAGAACCATGATAGCAATCAAATCTGGTGGTAAAGTTCCCTCAAATCTCATTGGAGATGCATTGA AAATCTATGCATCTAGATGGCTACCAAATATTACCAAGAATGGACATGTTAATAGAAAGCAAGTAGCTTCTGATAATTCT GACTTAGACTCAGCCAGTGAGATAACCTCAAAGCATCGTTTGCTTCTGGAATCAATAGTGAGCTTGCTTCCTGCAGAAAA AGGTGCTGTTTCTTGTAGCTTTCTTCTGAAGCTCTTGAAGGCATCCAATATTCTCAATGCTTCTTCATCTTCAAAGATGG AGTTAGCAACAAGAGTAGGGCTTCAACTTGAGGAAGCAACCGGGAATGATCTTTTGATACCCTCACTGTCTTACACAAAT GACACACTGTATGATGTTGAATTGGTGATGACCATATTGGAACAGTTCATGGCACGAGGGCAGAGTCCCCCAACTAGTCC TCCAAGGTCTCTGATGACCTTTGAAAGAAGGAGGTCTCGTTCAGCAGAGAATATTAACTTTGAATTTCAGGAGAGTAGGA GATCCTCTTCAGCTTCTCACAGTTCAAAATTGAAGGTGGCAAAGCTTGTGGACAGGTATCTTCAAGAAATTGCAAGAGAT GTAACTTTTTCCTTGTCCAAGTTCATTTCTCTTGCTGAAATTATACCAGATTTTGCAAGACAAGACCATGATGATCTCTA CAGAGCTATTGACATTTATCTCAAGGCTCATCCAGAACTCAACAAGAGTGAAAGGAAAAGACTATGTAGAATACTTGACT GCAAAAAACTGTCAATGGAAGCTTGTATGCATGCAGCACAAAATGAGTTACTCCCTCTAAGGGTTGTTGTGCAAGTTCTC TTCTTTGAGCAAGCTAGAGCAGCAGCAACTAATGGTGACAAAGTGTCTGATTTACCAAGCAACATCAAGACATTGCTTAC AGCACATGGAATTGACCCATCAAAACACACAGCACCCTTAAGCACTACCACAAGCATAAATGCTGAGGATAATTGGAGTG TTTCTGGCTTCAAGTCACCAAAGTCAAGGTCTTCAACTCTGAGGATGAAGTTAGCTGAGGATCATGATGATTTAGATGAA AATGGTTTAGCCAATGATGTGATTGGAAGAAATTCAAGATTTAGAGGAATCTGTGCTCTTCCTACACAACCCAAAAAAAT GTTTAGCAAGTTGTGGTCTGCAAATAGAGCAGCAGCCACTGAAAAGAATTGA
Protein sequence (LotjaGi2g1v0325200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEEVEKGNLIQKLDVFFNSCILRGWKDSIVSLQTTKALHLWSEDLEITSRCIEAIASKVLSHPTKVSLSHSHSRRVRDD VSSCNETESVRHKSNKGWWGEDLAELSIDLYWRTMIAIKSGGKVPSNLIGDALKIYASRWLPNITKNGHVNRKQVASDNS DLDSASEITSKHRLLLESIVSLLPAEKGAVSCSFLLKLLKASNILNASSSSKMELATRVGLQLEEATGNDLLIPSLSYTN DTLYDVELVMTILEQFMARGQSPPTSPPRSLMTFERRRSRSAENINFEFQESRRSSSASHSSKLKVAKLVDRYLQEIARD VTFSLSKFISLAEIIPDFARQDHDDLYRAIDIYLKAHPELNKSERKRLCRILDCKKLSMEACMHAAQNELLPLRVVVQVL FFEQARAAATNGDKVSDLPSNIKTLLTAHGIDPSKHTAPLSTTTSINAEDNWSVSGFKSPKSRSSTLRMKLAEDHDDLDE NGLANDVIGRNSRFRGICALPTQPKKMFSKLWSANRAAATEKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 517 | 517 | 1.0E-205 | – | |
PANTHER | 1 | 517 | 517 | 1.0E-205 | ||
ProSiteProfiles | 97 | 406 | 310 | 92.473 | ||
Pfam | 98 | 382 | 285 | 2.1E-97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0325200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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