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LotjaGi2g1v0341400.4

Overview

Field Value
Gene ID LotjaGi2g1v0341400
Transcript ID LotjaGi2g1v0341400.4
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Isoflavone reductase like; TAIR: AT1G32100.1 pinoresinol reductase 1; Swiss-Prot: sp|E6Y2X0|PILR2_LINUS Bifunctional pinoresinol-lariciresinol reductase 2; TrEMBL-Plants: tr|I3S7N7|I3S7N7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0341400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:81827743..81829829) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAAAAGAGCAAGGTCCTTATTGTTGGAGGAACAGGGTACCTAGGAAAGAGGTTAGTGAAGGCATGTTTGGCTCAGGG ACATGAAACATACGTTCTTCAGAGGCCAGATATTGGTGTTGACATTGAGAGAGTTCAGTTGCTTTTGTCATTCAAGGAAC AAGGAGCTAAGCTTGTGAAAGGTTCTTTCAATGATCACCAGAGCCTTGTGAATGCTGTGAAACTTGTTGATGTTGTGATT TGTGCCATATCTGGTGTTCACATCCGCAGCCACCAAATTCTCCTCCAACTTAAACTTGTTGATGCAATCAAAGAAGCTGG AAATGTCAAGGTAATGAACCTTTTAGTATAGGGTCATCACAATCTCATATAGTCACATCACTAAGTCTCCTAAGTAATAT GAAATAAAATCTTATCATACCATATAGTATTTTAAGAAAACTTTTCCATGTTCTACTTATTGTTATGCCATTTCATATTT GATCAAGAAATTGCTTAGTACACTAATGTCATGTTAATATTACATATAATAATGAATTTTAAAATTAACATTTCAACATT TTGAGAAAATGACGAATTCAATTTCTATCGCCTCTCAAGCCTCTTCAGCAATATTAATCACCGTAATATATGACATGTTT GATTTCGGTGCATTGAAATTTGAGAATGCGCGTTACAAGGCTCAGTAAGGTGCAAACATGAAAGGAACTCAAGACCTTTG CTAGCGTGAAACAAAAAATGCACCTAATTTGATATATTATGTTTTATTGAAATTTATCTTAGCCATTGATTAATCATTAC CACTTACCAAAATCAATGGTCAAAATTATGCATGAGAGGGGTTGTAGAGAAGCTTGCCGGAGATGATCCAAATTCGAAAA TGACACCTCAAAAGTTACTTTTAGTAGCTTCTGCAAGAATTACTTCTGTTTTTAACTTTAAAACCTATGAACTTTACAAA TTCACACTAAGTGAAATATATGTATGAACTGCAATTTTGCTGAATTTCTTGCTGTTAAGAATTGACATTCTGTATATATA TGCACAGAGATTTTTGCCATCAGAGTTTGGGACAGATCCAGCAAGGATGGAGCATGCATTGGAGCCAGGAAGAGTAACAT TTGATGACAAAATGGTTGTGAGAAAAGCCATTCAAGAGGCTAACATACCATTCACCTATATTTCTGCTAATTGCTTTGCT GGTTACTTCCTTGGTGGGCTGTGTCAACCAGGGTCTATAATCCCCTCTAAGGAATCTGTGGTGTTGTTTGGAGATGGCAA CATAAAGGGTAACTAATTAGCTATGTGCTTCCTAGTGTTAATAGATTAGGATCAACATCTTCTGTTTTCAACTTAATTTC GAATTCCACGGATAAATTTTTTTCATCCCAATTAAAATAGACATGGTGACAGAAGATTTCGATCTTATATATTGACACTC GCTTTTTTTTATTCCAATTTCACTTTTTTTTCTTTTTATTCCTCATTTTTTTCTAATCACATGACACATAATCTCTCTAG TTTTTTTCTTTCTCTGGGTGTGGGAGGAAATGGGTGTAAGATAACATTTTAGTGTTGTTTTCTACATACTATGTAAGTCA TTGTTTCAAGTAAGTGTCTCTTAATTTGGCAGCTATCTATGTGGATGAAGATGATATAGCCATGTACACCATCAAAACCA TAGATGACCCAAGAACTCTAAACAAGACAGTTTACATAAGGCCACCTAAGAACATATTGTCCCAGAGAGAGGTTGTTCAA ATTTGGGAGAAGCTGATTGGAAAAGAGCTGGAAAAATCTTCAATTTCTGCTGAACAGTTTCTGAGTTCCTTGGAAGGTGA GACATGTATCATTGAATTTGCAAAATCATGTAATATTGTTTTTTTAAAAACTTACTAATAATACTTTTCATGTTGAGAAA CAGGACAAGCATATGCAGAGCAAGTTGGATTGATACATTACTACCATGTTTGCTTTGAAGGCTGCCTGACAAATTTTGAG ATAGGAGAAGAAGAGGTTGAAGCTTGTGAACTTTATCCTGAAATCAAGTACACCACAGTTCATGACTACATGAAACGCTA TGTATAA 

CDS sequence (LotjaGi2g1v0341400.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAAAGAGCAAGGTCCTTATTGTTGGAGGAACAGGGTACCTAGGAAAGAGGTTAGTGAAGGCATGTTTGGCTCAGGG ACATGAAACATACGTTCTTCAGAGGCCAGATATTGGTGTTGACATTGAGAGAGTTCAGTTGCTTTTGTCATTCAAGGAAC AAGGAGCTAAGCTTGTGAAAGGTTCTTTCAATGATCACCAGAGCCTTGTGAATGCTGTGAAACTTGTTGATGTTGTGATT TGTGCCATATCTGGTGTTCACATCCGCAGCCACCAAATTCTCCTCCAACTTAAACTTGTTGATGCAATCAAAGAAGCTGG AAATGTCAAGAGATTTTTGCCATCAGAGTTTGGGACAGATCCAGCAAGGATGGAGCATGCATTGGAGCCAGGAAGAGTAA CATTTGATGACAAAATGGTTGTGAGAAAAGCCATTCAAGAGGCTAACATACCATTCACCTATATTTCTGCTAATTGCTTT GCTGGTTACTTCCTTGGTGGGCTGTGTCAACCAGGGTCTATAATCCCCTCTAAGGAATCTGTGGTGTTGTTTGGAGATGG CAACATAAAGGCTATCTATGTGGATGAAGATGATATAGCCATGTACACCATCAAAACCATAGATGACCCAAGAACTCTAA ACAAGACAGTTTACATAAGGCCACCTAAGAACATATTGTCCCAGAGAGAGGTTGTTCAAATTTGGGAGAAGCTGATTGGA AAAGAGCTGGAAAAATCTTCAATTTCTGCTGAACAGTTTCTGAGTTCCTTGGAAGGACAAGCATATGCAGAGCAAGTTGG ATTGATACATTACTACCATGTTTGCTTTGAAGGCTGCCTGACAAATTTTGAGATAGGAGAAGAAGAGGTTGAAGCTTGTG AACTTTATCCTGAAATCAAGTACACCACAGTTCATGACTACATGAAACGCTATGTATAA 

Protein sequence (LotjaGi2g1v0341400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKSKVLIVGGTGYLGKRLVKACLAQGHETYVLQRPDIGVDIERVQLLLSFKEQGAKLVKGSFNDHQSLVNAVKLVDVVI CAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTDPARMEHALEPGRVTFDDKMVVRKAIQEANIPFTYISANCF AGYFLGGLCQPGSIIPSKESVVLFGDGNIKAIYVDEDDIAMYTIKTIDDPRTLNKTVYIRPPKNILSQREVVQIWEKLIG KELEKSSISAEQFLSSLEGQAYAEQVGLIHYYHVCFEGCLTNFEIGEEEVEACELYPEIKYTTVHDYMKRYV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 312 312 7.1E-184
PANTHER 1 312 312 7.1E-184
SUPERFAMILY 3 270 268 1.12E-59
CDD 5 307 303 4.82203E-76
Gene3D 5 296 292 1.4E-116
Pfam 6 269 264 3.0E-64
Gene3D 157 308 152 1.4E-116

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0341400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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