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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF05368
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 43 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.023s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0024519.1
n.a. pinoresinol-lariciresinol reductase homolog [Lotus japonicus] gi|116077988|dbj|BAF34845.1| chr0 9773259 9775297 +
2 domain predictions
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Lj0g3v0067389.1
n.a. pinoresinol-lariciresinol reductase homolog [Lotus japonicus] gi|116077990|dbj|BAF34846.1| chr0 23918993 23921836 +
2 domain predictions
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Lj0g3v0293869.1
n.a. NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao] gi|508718233|gb|EOY10130.1| chr0 152604074 152604341 -
2 domain predictions
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Lj0g3v0306399.1
n.a. PREDICTED: NADH dehydrogenase [ubiquinone] gi|356548101|ref|XP_003542442.1| chr0 159868845 159874294 +
2 domain predictions
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Lj0g3v0361539.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502144229|ref|XP_004505624.1| chr0 190448445 190448912 +
2 domain predictions
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Lj1g3v2124770.1
n.a. pterocarpan reductase [Lotus japonicus] gi|116077986|dbj|BAF34844.1| chr1 25389907 25392093 +
2 domain predictions
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Lj1g3v3330040.1
n.a. NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao] gi|508705586|gb|EOX97482.1| chr1 37924123 37931185 +
2 domain predictions
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Lj2g3v1172450.1
n.a. leucoanthocyanidin reductase LAR1-2 [Lotus corniculatus] gi|85542822|gb|ABC71327.1| chr2 18562948 18567597 +
2 domain predictions
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Lj2g3v1536370.1
n.a. pinoresinol-lariciresinol reductase homolog [Lotus japonicus] gi|116077990|dbj|BAF34846.1| chr2 24217872 24221890 -
2 domain predictions
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Lj2g3v1734640.1
n.a. isoflavone reductase homolog [Lotus japonicus] gi|116077992|dbj|BAF34847.1| chr2 26770357 26772474 -
2 domain predictions
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Lj2g3v1734650.1
n.a. isoflavone reductase homolog [Lotus japonicus] gi|116077992|dbj|BAF34847.1| chr2 26770519 26779217 -
2 domain predictions
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Lj2g3v1734710.1
n.a. Isoflavone reductase-like protein [Medicago truncatula] gi|357483525|ref|XP_003612049.1| chr2 26794155 26803442 -
2 domain predictions
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Lj3g3v3360890.1
n.a. pterocarpan reductase [Lotus japonicus] gi|116077980|dbj|BAF34841.1| chr3 41246918 41250412 +
2 domain predictions
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Lj3g3v3360890.2
n.a. pterocarpan reductase [Lotus japonicus] gi|116077980|dbj|BAF34841.1| chr3 41246920 41250412 +
2 domain predictions
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Lj3g3v3360900.1
n.a. Isoflavone reductase-like protein [Medicago truncatula] gi|357473305|ref|XP_003606937.1| chr3 41247503 41253503 -
2 domain predictions
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Lj3g3v3360920.1
n.a. pterocarpan reductase [Lotus japonicus] gi|116077982|dbj|BAF34842.1| chr3 41255761 41258098 +
2 domain predictions
 –
Lj3g3v3360920.2
n.a. pterocarpan reductase [Lotus japonicus] gi|116077982|dbj|BAF34842.1| chr3 41255761 41258895 +
2 domain predictions
 –
Lj3g3v3360930.1
n.a. pterocarpan reductase [Lotus japonicus] gi|116077984|dbj|BAF34843.1| chr3 41259262 41262420 +
2 domain predictions
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Lj6g3v1604000.1
n.a. PREDICTED: isoflavone reductase homolog [Vitis vinifera] gi|225440211|ref|XP_002283648.1| chr6 18085826 18086591 -
2 domain predictions
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LotjaGi1g1v0420100.1
n.a. Isoflavone reductase like; TAIR: AT1G75280.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|E1U332|ALL12_OLEEU Isoflavone reductase-like protein; TrEMBL-Plants: tr|I3SR46|I3SR46_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0420100 LjG1.1_chr1 91362344 91364724 +
2 domain predictions
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LotjaGi1g1v0556200.1
n.a. Nad-binding protein; TAIR: AT4G35250.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|P48279|YCF39_CYAPA Uncharacterized protein ycf39; TrEMBL-Plants: tr|V7AXG2|V7AXG2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0556200 LjG1.1_chr1 108841360 108846437 +
2 domain predictions
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LotjaGi2g1v0089900.1
n.a. Isoflavone reductase like; TAIR: AT1G32100.1 pinoresinol reductase 1; Swiss-Prot: sp|P52581|IFRH_LUPAL Isoflavone reductase homolog; TrEMBL-Plants: tr|Q05JX8|Q05JX8_LOTJA Pinoresinol-lariciresinol reductase homolog; Found in the gene: LotjaGi2g1v0089900 LjG1.1_chr2 26373676 26376694 +
2 domain predictions
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LotjaGi2g1v0281700.1
n.a. Leucoanthocyanidin reductase; TAIR: AT1G75290.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q84V83|LAR_DESUN Leucoanthocyanidin reductase; TrEMBL-Plants: tr|A1XEF7|A1XEF7_LOTCO Leucoanthocyanidin reductase LAR1-2; Found in the gene: LotjaGi2g1v0281700 LjG1.1_chr2 75422569 75427522 +
2 domain predictions
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LotjaGi2g1v0341300.1
n.a. Isoflavone reductase like; TAIR: AT1G32100.1 pinoresinol reductase 1; Swiss-Prot: sp|P52581|IFRH_LUPAL Isoflavone reductase homolog; TrEMBL-Plants: tr|Q05JX8|Q05JX8_LOTJA Pinoresinol-lariciresinol reductase homolog; Found in the gene: LotjaGi2g1v0341300 LjG1.1_chr2 81816599 81823692 -
2 domain predictions
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LotjaGi2g1v0341300.2
n.a. Isoflavone reductase like; TAIR: AT1G32100.1 pinoresinol reductase 1; Swiss-Prot: sp|P52581|IFRH_LUPAL Isoflavone reductase homolog; TrEMBL-Plants: tr|Q05JX8|Q05JX8_LOTJA Pinoresinol-lariciresinol reductase homolog; Found in the gene: LotjaGi2g1v0341300 LjG1.1_chr2 81819862 81821395 -
2 domain predictions
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LotjaGi2g1v0341400.3
n.a. Isoflavone reductase like; TAIR: AT1G32100.1 pinoresinol reductase 1; Swiss-Prot: sp|E6Y2X0|PILR2_LINUS Bifunctional pinoresinol-lariciresinol reductase 2; TrEMBL-Plants: tr|I3S7N7|I3S7N7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0341400 LjG1.1_chr2 81827743 81829829 +
2 domain predictions
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LotjaGi2g1v0341400.4
n.a. Isoflavone reductase like; TAIR: AT1G32100.1 pinoresinol reductase 1; Swiss-Prot: sp|E6Y2X0|PILR2_LINUS Bifunctional pinoresinol-lariciresinol reductase 2; TrEMBL-Plants: tr|I3S7N7|I3S7N7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0341400 LjG1.1_chr2 81827743 81829829 +
2 domain predictions
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LotjaGi2g1v0388100.1
n.a. Isoflavone reductase homolog; TAIR: AT4G39230.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88435542 88437773 -
2 domain predictions
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LotjaGi2g1v0388100.10
n.a. Isoflavone reductase; TAIR: AT1G75280.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|E1U332|ALL12_OLEEU Isoflavone reductase-like protein; TrEMBL-Plants: tr|I3T4J4|I3T4J4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88460668 88462358 -
2 domain predictions
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LotjaGi2g1v0388100.2
n.a. Isoflavone reductase homolog; TAIR: AT4G39230.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88435542 88443455 -
2 domain predictions
 –
LotjaGi2g1v0388100.3
n.a. Isoflavone reductase homolog; TAIR: AT4G39230.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88435542 88443455 -
2 domain predictions
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LotjaGi2g1v0388100.4
n.a. Isoflavone reductase homolog; TAIR: AT4G39230.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88435542 88443455 -
2 domain predictions
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LotjaGi2g1v0388100.5
n.a. Isoflavone reductase homolog; TAIR: AT4G39230.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88435542 88443455 -
2 domain predictions
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LotjaGi2g1v0388100.6
n.a. Isoflavone reductase homolog; TAIR: AT4G39230.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88435542 88443455 -
2 domain predictions
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LotjaGi2g1v0388100.7
n.a. Isoflavone reductase homolog; TAIR: AT1G75280.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88435752 88462508 -
2 domain predictions
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LotjaGi2g1v0388100.8
n.a. Isoflavone reductase homolog; TAIR: AT4G39230.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88440188 88443455 -
2 domain predictions
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LotjaGi2g1v0388100.9
n.a. Isoflavone reductase homolog; TAIR: AT1G75280.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|P52575|IFR_MEDSA Isoflavone reductase; TrEMBL-Plants: tr|Q05JX7|Q05JX7_LOTJA Isoflavone reductase homolog; Found in the gene: LotjaGi2g1v0388100 LjG1.1_chr2 88441249 88462508 -
2 domain predictions
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LotjaGi3g1v0509100.1
n.a. Isoflavone reductase related protein; TAIR: AT4G39230.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|E1U332|ALL12_OLEEU Isoflavone reductase-like protein; TrEMBL-Plants: tr|Q05JY3|Q05JY3_LOTJA Pterocarpan reductase; Found in the gene: LotjaGi3g1v0509100 LjG1.1_chr3 92633350 92639400 +
2 domain predictions
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LotjaGi3g1v0509200.1
n.a. Isoflavone reductase family protein; TAIR: AT4G34540.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|O65679|PILR3_ARATH Probable pinoresinol-lariciresinol reductase 3; TrEMBL-Plants: tr|G7JHC4|G7JHC4_MEDTR Phenylcoumaran benzylic ether reductase-like protein; Found in the gene: LotjaGi3g1v0509200 LjG1.1_chr3 92633350 92640018 -
2 domain predictions
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LotjaGi3g1v0509200.2
n.a. Isoflavone reductase family protein; TAIR: AT4G34540.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|O65679|PILR3_ARATH Probable pinoresinol-lariciresinol reductase 3; TrEMBL-Plants: tr|G7JHC4|G7JHC4_MEDTR Phenylcoumaran benzylic ether reductase-like protein; Found in the gene: LotjaGi3g1v0509200 LjG1.1_chr3 92637244 92639902 -
2 domain predictions
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LotjaGi4g1v0146200.1
n.a. Isoflavone reductase like; TAIR: AT1G32100.1 pinoresinol reductase 1; Swiss-Prot: sp|P52581|IFRH_LUPAL Isoflavone reductase homolog; TrEMBL-Plants: tr|Q05JX9|Q05JX9_LOTJA Pinoresinol-lariciresinol reductase homolog; Found in the gene: LotjaGi4g1v0146200 LjG1.1_chr4 23607258 23610121 +
2 domain predictions
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LotjaGi5g1v0152500.1
n.a. NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial; TAIR: AT2G20360.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SK66|NDUA9_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial; TrEMBL-Plants: tr|I3T6Q6|I3T6Q6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0152500 LjG1.1_chr5 39812533 39818256 +
2 domain predictions
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LotjaGi5g1v0268000.1
n.a. Leucoanthocyanidin reductase; TAIR: AT1G75290.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q84V83|LAR_DESUN Leucoanthocyanidin reductase; TrEMBL-Plants: tr|A1XEF8|A1XEF8_LOTCO Leucoanthocyanidin reductase LAR2-1; Found in the gene: LotjaGi5g1v0268000 LjG1.1_chr5 58037016 58039519 +
2 domain predictions
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