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LotjaGi2g1v0342500.5

Overview

Field Value
Gene ID LotjaGi2g1v0342500
Transcript ID LotjaGi2g1v0342500.5
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Kinase-like protein; TAIR: AT4G19110.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q6Z8C8|CDKF4_ORYSJ Cyclin-dependent kinase F-4; TrEMBL-Plants: tr|G7K6V4|G7K6V4_MEDTR Cyclin-dependent kinase; Found in the gene: LotjaGi2g1v0342500
Working Lj name n.a.

We have encountered a general error: No InterPro domain data available

Sequence information

Genomic sequence (LjG1.1_chr2:81976530..81976993) extracted from Lotus japonicus Gifu genome v1.2.

ATGAACCACCCAAATATTGTTAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTACTTTGTTTTTGAGTATATGGT AGGTAACTGGATGTTTTGGTAGACAAGCGGGCTGAATTGGCTGATTTAAGATCTTAAATACTAATTGCTATGTCAATTTC TGGGTGATGCAGGAATGCAACCTTTACCATCTTATGAAAGATAGGGAAAAGCTGTTCTCTGAAGGTGAAATTAGAAATTG GTGTTTTCAGGTTTTCCAAGGTCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACATGAAACCTGGTAATTTTA TCTAGTCTTGTAGAGTACGTTGTTCATCATTCGTTTATATCATGTGTATCATGTAATGTATTTGTTGTTAGCATCTTGTT CTCTACTACCAATTCTCTACTTTCTTTTGTCAAAAAGTGATTTTTATGCAATTTGTAGATCTAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0342500.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACCACCCAAATATTGTTAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTACTTTGTTTTTGAGTATATGGA ATGCAACCTTTACCATCTTATGAAAGATAGGGAAAAGCTGTTCTCTGAAGGTGAAATTAGAAATTGGTGTTTTCAGGTTT TCCAAGGTCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACATGAAACCTGGTAATTTTATCTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0342500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNHPNIVKLKEVIRESDILYFVFEYMECNLYHLMKDREKLFSEGEIRNWCFQVFQGLAYMHQRGYFHRDMKPGNFI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Unable to find any records for the transcript with the identifer LotjaGi2g1v0342500.5.

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0342500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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