Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0383700 |
Transcript ID | LotjaGi2g1v0383700.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger, B-box; TAIR: AT4G38960.1 B-box type zinc finger family protein; Swiss-Prot: sp|C0SVM5|BBX19_ARATH B-box zinc finger protein 19; TrEMBL-Plants: tr|I3SZI8|I3SZI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0383700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88004521..88006175) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGAACTCTTTGTGACGCTTGTGAAAGCGCCGCCGCTATTGTCTTCTGCGCCGCCGATGAAGCTGCACTCTGCCGTGC CTGCGATGAGAAGGTATCATTGTTTGTTGACTTCTGATGCTCTCTGATGTGTCTGTCTTTCCCTTTGGATCACTGTCTGT GAAGTTTCTAATCTGATGTTTCTCAAGTGTTCCTGACATATTCTTTGATGTTTACATGAGTAATGTAGCAATATTGGAAT TGTGGGCTAACTTGATGTAGTGCCCATGGGGTAACAAATTGAAGTGCTTGCAGTTTGACTCTCCTTTTTTGTTATAGATT TGAGATTTTGTTGTGTTCCCATTTGATCTTTATTTGGATTTGTATGAATTTGAACTTTAAGTTCAGTTTTTAGTTTAATC TGGTATGGATTATCCTGGTCAACATCTTTCAACTAGTGTAATGAAAACATTCTGGAGCTACAAAGATAGCGTTATTAAAT TTATAGCGCTGCAGAAAAGATAGTCTGTTATAGCCATTTCCGTACATTCAATCTACCCTACGGATAGAGGAACACATATA GGGTTGAACATAGTAAAATAAGAAATTGAGAGATTTTATTGATATTATTCAGTTGAAATTTTCCCGAAAAGCTAATCATA GGTTCTTCTCTCCATAGGAATAAGAACTATAATTCTCATAAATTTGCTCAAGAGATATAAAATAGAACCAAGATATATCT TTCTTATCAGTGGTTGATTTGATTTTGTGACATATTAGTGAGATACGGGTGCAACTATGATCCTATTGGGTATTATTTAT AATATAGCAAATATGTTGTAATCTCATAACAGTGGCTCAAGGTTTGAACTTTTGTTGCTGATAGGTTCATTTGTGCAATA AGCTAGCTAGTCGGCATGTAAGGGTTGGTCTTGCTAGTCCAAGTGATGTGCCACGCTGTGACATATGCGAGAATGCACCT GGTAGGAAGTTTTCTCTCTCTCTATCCTTTATGGTGTTCCTCTCTTGCCTATTGCTTATGGGTTTCCCCTTTCAATCTGG ATGTAGCTTTCTTCTACTGCGAGACGGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAA AGAACTCATAGAAGATATCTTCTGTTTCGGCAAAGAATTGAGGTGTGGCTCTGCCTTCCAAACTAGCTTGGTTTTATAGC ATGTTTGGATCATATTCTCTTTCCTCAAAATCAATTTTGGAATTCAGAAGCTACCACAGAAGCTTCTTCCCATAATTGAT TCTGACTTTAGAATCAATTGTAGAAGACTTTCCAAACATGCACTTAATTTGTTATCTTGCTACCTTTTGGTTCCCTTAAA ATGTATAATAATATCTCTTGTTCCATAGTTTCCAGGTGATAAATCTAGCCATGCAGAAAACCCAGCTTCACTACCTCTGG AACCAGGTGAGGCTAAGAGAGGACAGAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCTTCAAAATCACATGATGCCA CTGGTTCCAATGCCAGAACCTGAAGGTGATGGGCAGTCCAAGATGGAAACTGAAATGTTTGATTTGAACATGAACCCTAA CAGAATACACGAACAAGCATCAAATAATCATCAGGTTAGAGTTCATGGGAACTAA
CDS sequence (LotjaGi2g1v0383700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAACTCTTTGTGACGCTTGTGAAAGCGCCGCCGCTATTGTCTTCTGCGCCGCCGATGAAGCTGCACTCTGCCGTGC CTGCGATGAGAAGGTTCATTTGTGCAATAAGCTAGCTAGTCGGCATGTAAGGGTTGGTCTTGCTAGTCCAAGTGATGTGC CACGCTGTGACATATGCGAGAATGCACCTGCTTTCTTCTACTGCGAGACGGATGGAAGTTCCCTTTGTTTGCAGTGTGAT ATGATAGTTCATGTTGGAGGTAAAAGAACTCATAGAAGATATCTTCTGTTTCGGCAAAGAATTGAGTTTCCAGGTGATAA ATCTAGCCATGCAGAAAACCCAGCTTCACTACCTCTGGAACCAGGTGAGGCTAAGAGAGGACAGAATCCACTTCCCAAAC TAAAAATGGGAGAGAAGCTTCAAAATCACATGATGCCACTGGTTCCAATGCCAGAACCTGAAGGTGATGGGCAGTCCAAG ATGGAAACTGAAATGTTTGATTTGAACATGAACCCTAACAGAATACACGAACAAGCATCAAATAATCATCAGGTTAGAGT TCATGGGAACTAA
Protein sequence (LotjaGi2g1v0383700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTLCDACESAAAIVFCAADEAALCRACDEKVHLCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCD MIVHVGGKRTHRRYLLFRQRIEFPGDKSSHAENPASLPLEPGEAKRGQNPLPKLKMGEKLQNHMMPLVPMPEPEGDGQSK METEMFDLNMNPNRIHEQASNNHQVRVHGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 183 | 183 | 1.8E-102 | – | |
PANTHER | 1 | 183 | 183 | 1.8E-102 | – | |
ProSiteProfiles | 1 | 47 | 47 | 10.239 | ||
SMART | 1 | 47 | 47 | 1.8E-8 | ||
Gene3D | 2 | 96 | 95 | 1.1E-7 | – | |
Pfam | 3 | 34 | 32 | 9.0E-6 | ||
CDD | 3 | 45 | 43 | 1.81425E-6 | ||
SUPERFAMILY | 48 | 88 | 41 | 7.33E-6 | – | |
SMART | 51 | 96 | 46 | 4.0E-12 | ||
ProSiteProfiles | 51 | 96 | 46 | 9.442 | ||
Pfam | 52 | 92 | 41 | 6.8E-8 | ||
CDD | 54 | 93 | 40 | 6.17509E-8 | ||
MobiDBLite | 106 | 133 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0383700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…