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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0383700 |
| Transcript ID | LotjaGi2g1v0383700.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger, B-box; TAIR: AT4G38960.1 B-box type zinc finger family protein; Swiss-Prot: sp|C0SVM5|BBX19_ARATH B-box zinc finger protein 19; TrEMBL-Plants: tr|I3SZI8|I3SZI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0383700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88004521..88006175) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGAACTCTTTGTGACGCTTGTGAAAGCGCCGCCGCTATTGTCTTCTGCGCCGCCGATGAAGCTGCACTCTGCCGTGC CTGCGATGAGAAGGTATCATTGTTTGTTGACTTCTGATGCTCTCTGATGTGTCTGTCTTTCCCTTTGGATCACTGTCTGT GAAGTTTCTAATCTGATGTTTCTCAAGTGTTCCTGACATATTCTTTGATGTTTACATGAGTAATGTAGCAATATTGGAAT TGTGGGCTAACTTGATGTAGTGCCCATGGGGTAACAAATTGAAGTGCTTGCAGTTTGACTCTCCTTTTTTGTTATAGATT TGAGATTTTGTTGTGTTCCCATTTGATCTTTATTTGGATTTGTATGAATTTGAACTTTAAGTTCAGTTTTTAGTTTAATC TGGTATGGATTATCCTGGTCAACATCTTTCAACTAGTGTAATGAAAACATTCTGGAGCTACAAAGATAGCGTTATTAAAT TTATAGCGCTGCAGAAAAGATAGTCTGTTATAGCCATTTCCGTACATTCAATCTACCCTACGGATAGAGGAACACATATA GGGTTGAACATAGTAAAATAAGAAATTGAGAGATTTTATTGATATTATTCAGTTGAAATTTTCCCGAAAAGCTAATCATA GGTTCTTCTCTCCATAGGAATAAGAACTATAATTCTCATAAATTTGCTCAAGAGATATAAAATAGAACCAAGATATATCT TTCTTATCAGTGGTTGATTTGATTTTGTGACATATTAGTGAGATACGGGTGCAACTATGATCCTATTGGGTATTATTTAT AATATAGCAAATATGTTGTAATCTCATAACAGTGGCTCAAGGTTTGAACTTTTGTTGCTGATAGGTTCATTTGTGCAATA AGCTAGCTAGTCGGCATGTAAGGGTTGGTCTTGCTAGTCCAAGTGATGTGCCACGCTGTGACATATGCGAGAATGCACCT GGTAGGAAGTTTTCTCTCTCTCTATCCTTTATGGTGTTCCTCTCTTGCCTATTGCTTATGGGTTTCCCCTTTCAATCTGG ATGTAGCTTTCTTCTACTGCGAGACGGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAA AGAACTCATAGAAGATATCTTCTGTTTCGGCAAAGAATTGAGGTGTGGCTCTGCCTTCCAAACTAGCTTGGTTTTATAGC ATGTTTGGATCATATTCTCTTTCCTCAAAATCAATTTTGGAATTCAGAAGCTACCACAGAAGCTTCTTCCCATAATTGAT TCTGACTTTAGAATCAATTGTAGAAGACTTTCCAAACATGCACTTAATTTGTTATCTTGCTACCTTTTGGTTCCCTTAAA ATGTATAATAATATCTCTTGTTCCATAGTTTCCAGGTGATAAATCTAGCCATGCAGAAAACCCAGCTTCACTACCTCTGG AACCAGGTGAGGCTAAGAGAGGACAGAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCTTCAAAATCACATGATGCCA CTGGTTCCAATGCCAGAACCTGAAGGTGATGGGCAGTCCAAGATGGAAACTGAAATGTTTGATTTGAACATGAACCCTAA CAGAATACACGAACAAGCATCAAATAATCATCAGGTTAGAGTTCATGGGAACTAA
CDS sequence (LotjaGi2g1v0383700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAACTCTTTGTGACGCTTGTGAAAGCGCCGCCGCTATTGTCTTCTGCGCCGCCGATGAAGCTGCACTCTGCCGTGC CTGCGATGAGAAGGTTCATTTGTGCAATAAGCTAGCTAGTCGGCATGTAAGGGTTGGTCTTGCTAGTCCAAGTGATGTGC CACGCTGTGACATATGCGAGAATGCACCTGCTTTCTTCTACTGCGAGACGGATGGAAGTTCCCTTTGTTTGCAGTGTGAT ATGATAGTTCATGTTGGAGGTAAAAGAACTCATAGAAGATATCTTCTGTTTCGGCAAAGAATTGAGTTTCCAGGTGATAA ATCTAGCCATGCAGAAAACCCAGCTTCACTACCTCTGGAACCAGGTGAGGCTAAGAGAGGACAGAATCCACTTCCCAAAC TAAAAATGGGAGAGAAGCTTCAAAATCACATGATGCCACTGGTTCCAATGCCAGAACCTGAAGGTGATGGGCAGTCCAAG ATGGAAACTGAAATGTTTGATTTGAACATGAACCCTAACAGAATACACGAACAAGCATCAAATAATCATCAGGTTAGAGT TCATGGGAACTAA
Protein sequence (LotjaGi2g1v0383700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTLCDACESAAAIVFCAADEAALCRACDEKVHLCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCD MIVHVGGKRTHRRYLLFRQRIEFPGDKSSHAENPASLPLEPGEAKRGQNPLPKLKMGEKLQNHMMPLVPMPEPEGDGQSK METEMFDLNMNPNRIHEQASNNHQVRVHGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 183 | 183 | 1.8E-102 | – | |
| PANTHER | 1 | 183 | 183 | 1.8E-102 | – | |
| ProSiteProfiles | 1 | 47 | 47 | 10.239 | ||
| SMART | 1 | 47 | 47 | 1.8E-8 | ||
| Gene3D | 2 | 96 | 95 | 1.1E-7 | – | |
| Pfam | 3 | 34 | 32 | 9.0E-6 | ||
| CDD | 3 | 45 | 43 | 1.81425E-6 | ||
| SUPERFAMILY | 48 | 88 | 41 | 7.33E-6 | – | |
| SMART | 51 | 96 | 46 | 4.0E-12 | ||
| ProSiteProfiles | 51 | 96 | 46 | 9.442 | ||
| Pfam | 52 | 92 | 41 | 6.8E-8 | ||
| CDD | 54 | 93 | 40 | 6.17509E-8 | ||
| MobiDBLite | 106 | 133 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0383700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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