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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0383900 |
| Transcript ID | LotjaGi2g1v0383900.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0183 protein; TAIR: AT3G51130.1 transmembrane protein; Swiss-Prot: sp|Q9SD33|U183_ARATH UPF0183 protein At3g51130; TrEMBL-Plants: tr|A0A0R0LIM7|A0A0R0LIM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0383900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88015484..88021823) extracted from Lotus japonicus Gifu genome v1.2.
TTATTTGCTAGTGTTAGACCAAACATTTATATAACCTCATAGCAAACGCTAGCATTGAAGAATAGGAAAATAATTAGAAA AAAGATGGTTTCCGTGGCGTGCTGGAGGGGGCATCTGTGGTGTTAAAAGGGGAAAGGGAAGCTTGTTTATCCGTCCAATC CAATCAAACACCAACACAATAATAATAATATATAAGCATTCATTCAATCAAACCCCTTATATGCTCCCATTTCATCACCG AAAGTAACGGAATCGTTTCACAAAACTCCAAAATACCCCTCCCTCCCTCCTCCACCTCATACCTACCACCACCACTATGT TGCAGAGACCCAGACGGCGTTGCGAGGGCACAGCCATGGGCGCCATCGTTCTCGATCTCCGTCCTGGTCTCGGAATCGGA CCTTTCTCTCTCGGTAATTTCTCATGCCCTATCCCAATTGAACAACTATCTAATCCATTTTCGAATTCCACTTTGTTTTT CTCGAATTCGATTCATGTAGAGTTGTTGTCGTTTATCGATTGAGTTTTTGCTACTTAGGGATGCCTATATGTGAAGCATT TGCTCAGATAGAACAGCAACCTAATATTTACGATGTGGTTCATGTCAAGTACTTTGATGAGGTTTGTAACTTATGATACT GCTGTTTGTTCTATGTTATTGCTGAGATCACTGACAGTGACTTTTTTTTGTTTCCTGGGAAATTGATTTACATTTACTTT GATTTCTTATAGTCTGAGCATTTACAGGAACCACTCAAGTTGGATATTGTTATTAGCTTTCCCGATCACGGCTTTCATCT TCGTTTCGATCCCTGGTCTCAGGTGTTGTGTCTTTCCTCTGCCCCTCATTTTATCAAGTATTTGTTTAGAGAAAACATGA GATGATGTGGCTCGGTTAGTGAAATTTTTCTTTGCTGTGTCTTAAATAGGAAGCGCGTAAGTGCTTGATAAGTTAGTACT TTACAATTTATTGGATTGGTGTCTTAGCTATTGCTTTAGTTTTTTTAGTGTTGAGATCTAATTAATAGTTGTCGAATTAC AATTAAATTAGTTTGACTGATATTTGAGAATGCAAATTTAGAAAGTGTATGAAGAGTTCCTGCGGAAAATGAATGGGTTC TGGAAGTCATTGGATTCTCTTTGAAAAGGCTGTAGTTTTTAGTTTGAATTCTGATTGATATGAGAATAATAAGAATGGAA AGTTGCTTAAGGATCTTGTGGAACTATCCCAATGCAAATGAGAAACTATGTAGCAGTGTAATTGTAGTTTAGAATTTAGC TAAACTTTCTTACTCCAAGTTCATTAAGGGTGGATTACTTGAGCTTGTGTTTTTTCTGCACTAGATCTGTTTCTTTTGTT ACAATCATGCGCGCTTTCCCATCACGATGATGCTGCAGTAGAGAAGTTTTATTCATTTGAGCCTGATATTCCTGATTTGT TCAGCAGTTATGAATCATTTCCAAATTTCTCTTGCTTCTTCTTAAATATTGAACGCTTCAACCTCTGCTGTATGCTGCAG TTTTTATGCCTTTGATCATTTTAAGCTGTTGCACAGTGCCTGTATTCATTGTTAGCCATTTATGACAAGACTTGTTGTGA CAAAACTTTCCGTACCATTTCAGAGACTGCGTCTTATTGAAATATTTGATGTAAAGCGGCTTCAAATGCGCTACTCTACT TCTCTGATTGGGTGAGTTTTTGGACTTATAATTTTAATCTCTATATATTGTTACAGACTTAATTGATTGTCTTTTCAACT TCTAGGGGACCGTCAACTCTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCAACATATCCTGGAATTTTCGATAA GGATAGAGGCATTTACACTCTGTTCTATCCGGTATATATTTGGGACACAAAATTTATTATAGTTGCTGTTAATTTTTTTC TTTCTACAGTTCCACATTAATACTTTCTGAATTATATTTTCCTTGGTTTGGTCTTTAGGGTCTTTCCTTTGCATTTCCGA TTCCAAGTCAGTTCACAGACTGCTGTCAAGATGGGGGAGGTATATCATCTTGAAACTGAAACATTGTTTTGAATTTTCTA ATTCTAATATGTTAACTTTGTTTCTCTTCATCATGAAAGTGGAATTGCCATTGGAGTTTCCAGATGGGACCACACCAGTT ACATGCCGTGTTTCTATATATGATAGCTCCTCTGGTAAGAAGGTTGGTGTGGGGTCTTTAATGGACAAGGCTTCTGCTCC TCCATTATCTCCTGGCAGCATTTACATGGAAGAGGTTCATGTTAAGGTTAGGGCTATTTAAGTTTCCCTAAATCAGTTTG GGTTCTTGCTTCTTTAGTAGGACACCTTTTGGAGAAACTGCCTGCCCATTTTGAGTAGGTGGCTGTAACTTTGGTATAAT TCCGTTCTTTCTCTGTTATGTAGCTGGGGGAAGAATTATACTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCC CCACAGGTAAGCTCCATGTTACATACACTAGAAAGTTTGAGCTATGTGTTTAACGGATTATATTCCTGTTCTTTCTTTGT CACCTTATTCTTTATCTGAAGCCAAGTTTGTATTATGCTTCTTGTGTTATGCAGGATGTGTGGACTGAGCTAGGACGTCC CTGCGGTATTCATCAAAAGCAGGTACCCTGAATTACTAGTTATTAAATGAAATAAGGTTATTTTGTGGTAATGTTGTGTG ATTAAACTGATATATGTTGCAGTGATGTCTGCTGAATTAGAGTGAACTCTTTCTGCATCTTTATTGTTGGTGTACTGTGG AGAATTGAATATATTAAGATTTATACAATAATATTATTAAGATCTTCGTGGTCATTTCTTGAGTTTTTTTTAGCAAATAT ATAGTTCAATTTTAACTTTAAAATGTCTTCTCCCTCTAATGGATCATATGAGGAACTAGGCAATTGGTTTCTGTGTGTTT TAGACTACATCTTTGTTCGGTAACTTAGCTGGCGAGAAATAGAGAGGAAATACAGCCAGTGGGGAAATAAAATTGATGCA AGAAGGTGCATGTGATCAACCTGTTATTTTTTCCTTCCGGTGTTGAAGAAAATGAACAAAAAATGTGCAGCTTATCTATT TTCCAAGATTACCCATACTGCTGCCATATCCACATGCTATGCTTTTGTGAATTCTCCTTCTTATGCGAACTGATTGTTCC TTCCAATTTTATACTTGTTTTTCTTTGTTTCTCTCATAGTAGTCAATCGCGGCAAATAGCGGCGCTATCGCGCCGTCGCG TCGCGTCGCGGCCCTTCCCCGCGATTCTGAATCGATCGCGTCGCGGAACGCCGTCGCGGCTGTCGCGCCGCGAATCGCGG CCAAATTGCGTTCAAATCACGTTCAATCGCAGCAAATCGCGGTGCTCCAGGTTGAAGATGGGTCGGGTCCAAGGAAAATC CCCAAATTGCCCTCAAAATTTCAAAATTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCGCTCTTATAAGTGAAACGGT GCGTTTCACTCGTCTTCTTCAACGCGTTTCTTCTTCTTCTTCTTCATACGCGTTTCCTCTGCAATCTCCGGTGTCGTTCC TTCAGCTCAGCCCCTTCGACCAGAAGTCCAGAACCCATGGCCACGGCGCAATCTGACAAGCACCTTCCAGGCTCCGGCGA CCACCACCCCTGTTTCTCTTGGGCCTTTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTATTCCTCTATTTTTCTTT CCTTTCTTTTCCTTCTTATTTATTATTCTGTTCTCAAAAATACTTCTCCAGTTCTTCTCCTCTAGTATTCCTCTCTTCTC TATCACTTCATCATGTTATGAATTTGAATTTTGAAGTTATATTTATCACTTTTTAGTAATTATATGTATATATTAATTAT ATAATATTATATGTGAAAAATCAAAATAGCGGTCATCCCGCTATCCGCTATCCCGCTATCCCACTTTTGGGGTCGGCCGT TACGCGCCGCGATCCGGGATTGACTACTATGGTTTCTCTTTCCTTTTCTTATTGGAGTTTTTCGACATGCACAGCAGAGA GCTGCATAGTTGTTGTACACTTGTACTTTCTATGGTTCTTGTAAAATGTAGGATATATGGTAGCCTAAGGCTAGATTAAT TGCTTGAGGATATGCTTGGAACATATGGACATCTTGTATGGTTTCTCTACCTAATGCTTTAGTAGTAGAAGGTCTTTCTA GATCCACTAGGACACGTGCAATGTAGTTGATAAGTTCTTTTTGGTGGCATTCGTAATTCAGCAGTTCAGATTTCAGAAGA CTTGCATTGATCCAAACAAAAGTTATCAAAATAGAGCTTACAGTCAAAATAATATCTGAAGCTAATGTTTCTTCTCGTAA TCTTGTTTGCAAGTTAATGGACTAGTTATGTCATTCATTATATATATATATTTAAGGAGGCATAATTTGAACTCTTCCTT GAGCCTTAAGTAACATCGTATTATTTTTAGCTTGTTAAGTGCTTGCATGAGTATTTTGTTTGGGTGGATTCTGATTCTCA ATTCTGCAGGTAGATCAAATGGTTATTCATTCTTCCTCAGATCTTCGGCCTCGAACAACTCTCTGTGGAGATTACTTCTA TAATTATTTTAATCGTGGTCTTGACATCTTATTTGATGGACAGGTTTGTGTTTACCTCATTGTTCTGTTTATATGCACTG TGATACAATTGACAATGGAAGCTCCTCATATCTATTGTATTTCAGACTCACAAAATCAAGAAGTTTGTGTTACACACCAA CTATCCTGGTCATGCTGATTTTAATTCTTACATCAAGTGCAACTTTGTTATCCATGGCTCAGATGGTAAGCAGTCTTATT TGCATTGCAGTATTTAGATTGGTCTTGATGTAACAGTTATGTATATGTTTGTCATGAAAAATGAGATTTTGTTTTCTCCT TTCCAGCAGTGGACGGATCTTTTCAGGAAGTAAATAACAGCAAACAGGGGGCTATTACGCCTAGTACCAAGTGGGAACAA GTGAAGGTGATCTTTTTGCCTTTCCAAATTGTATGGTTTTCCTTACGGCTGATGTTTCATCTTGGATGAACTTCTTTACT TGAAATATATGACATAATTTGGGGAAGAAAGTTGTGATTAGATTTGATATGGGTTTCTTATAATGATTCATAGAAGCTTT TATCATATATTCTTTTAGGAAACACTGGGGGATTGTGGGCGAGCTGCCATTCAAACTCAAGGTTCTGCAAGTAACCCTTT TGGTTCCACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGCGTCATTCTTGGTGTTTTTTCCTCCTGCTAATTC AATAGAGTACCAAGGTGCCTTGAAGAGACTGCTAATCTATATTCTTGTGACCTTTTCAGGTGATGAAGAATGGTTATATT GCAACAATAACTCTTTTCCAGTCATGATGGTATGTATCTATGTAAATTTCTACCTTATTTAGATAGCAAGTAATTATTAC CTTAGTTTTTCATTAAACCAACATAGGCTTAGGTTTTCTAATGAAAATTCACCTAACTCAAGGAAATTGTCCTTTTATCA ATGCTAGTTATTGTTTTAAAGATTAAAACAAAATGCTGTTAGTATATGCAGAAAAATTTGCCACATCAGCATGACTGAAG GAAAATTTGTTTTTTTTTTATTAATGCTAGTTGTTGTTTGAAACAAACTGGCTGTTAGTCTATGCAGAAAAATTTAGTTG CCACATCAGCACTGAATGAAGAATGGATGTATGACAACTGATCAAGATGGATCCTCAACGAGAATCATTTGATAATTTTA AGGATTCATTTAGAATCTTTTCAACTAGGACTAATCAAAAAGCTCTACAGACCTCTAGGCTCTAGGGAGCAACATATAAC ACTGAAATATGAGCATGTATACATTGCTGCAGGGGCTTTTGGCTACCCCTGATCTTTCTCTGTATTGTTTATTAAGGTTT CTCAAGCTTGGCTATGGAACTTCACACGGAAAAGCTGGCTAGGTTTGTATGATCAGGGTGTATGATAAGTTCAACGATCA TCACCATCATTATCGCCGTGGCAAGGGATATCACAATTGTACAGCTATTGTGATAAATTGTACATATTAAAATTGTATTG TGTAAATTTTTAACATTTACGTTGACATCTTGTACAAAGCTAATATACAAATTCCTAACGCATTTATCTTTCAGATGGCT TCATGTTGCTAGGTTTTTGAATTCTTTACTCGCTTCAATTGTTCTCAGTCAACCACTTCTCTTCTCCTTTCTTTTCTTGA TTGAGTTGTTTCTCCTGATC
CDS sequence (LotjaGi2g1v0383900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGAGACCCAGACGGCGTTGCGAGGGCACAGCCATGGGCGCCATCGTTCTCGATCTCCGTCCTGGTCTCGGAAT CGGACCTTTCTCTCTCGGGATGCCTATATGTGAAGCATTTGCTCAGATAGAACAGCAACCTAATATTTACGATGTGGTTC ATGTCAAGTACTTTGATGAGTCTGAGCATTTACAGGAACCACTCAAGTTGGATATTGTTATTAGCTTTCCCGATCACGGC TTTCATCTTCGTTTCGATCCCTGGTCTCAGAGACTGCGTCTTATTGAAATATTTGATGTAAAGCGGCTTCAAATGCGCTA CTCTACTTCTCTGATTGGGGGACCGTCAACTCTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCAACATATCCTG GAATTTTCGATAAGGATAGAGGCATTTACACTCTGTTCTATCCGGGTCTTTCCTTTGCATTTCCGATTCCAAGTCAGTTC ACAGACTGCTGTCAAGATGGGGGAGTGGAATTGCCATTGGAGTTTCCAGATGGGACCACACCAGTTACATGCCGTGTTTC TATATATGATAGCTCCTCTGGTAAGAAGGTTGGTGTGGGGTCTTTAATGGACAAGGCTTCTGCTCCTCCATTATCTCCTG GCAGCATTTACATGGAAGAGGTTCATGTTAAGCTGGGGGAAGAATTATACTTCACTGTTGGCTCTCAACACATTCCTTTT GGTGCATCCCCACAGGATGTGTGGACTGAGCTAGGACGTCCCTGCGGTATTCATCAAAAGCAGGTAGATCAAATGGTTAT TCATTCTTCCTCAGATCTTCGGCCTCGAACAACTCTCTGTGGAGATTACTTCTATAATTATTTTAATCGTGGTCTTGACA TCTTATTTGATGGACAGACTCACAAAATCAAGAAGTTTGTGTTACACACCAACTATCCTGGTCATGCTGATTTTAATTCT TACATCAAGTGCAACTTTGTTATCCATGGCTCAGATGTGGACGGATCTTTTCAGGAAGTAAATAACAGCAAACAGGGGGC TATTACGCCTAGTACCAAGTGGGAACAAGTGAAGGAAACACTGGGGGATTGTGGGCGAGCTGCCATTCAAACTCAAGGTT CTGCAAGTAACCCTTTTGGTTCCACTCTTGTATATGGTTATCAAAATATTGCCTTTGAGGTGATGAAGAATGGTTATATT GCAACAATAACTCTTTTCCAGTCATGA
Protein sequence (LotjaGi2g1v0383900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQRPRRRCEGTAMGAIVLDLRPGLGIGPFSLGMPICEAFAQIEQQPNIYDVVHVKYFDESEHLQEPLKLDIVISFPDHG FHLRFDPWSQRLRLIEIFDVKRLQMRYSTSLIGGPSTLATFVAVYALFGPTYPGIFDKDRGIYTLFYPGLSFAFPIPSQF TDCCQDGGVELPLEFPDGTTPVTCRVSIYDSSSGKKVGVGSLMDKASAPPLSPGSIYMEEVHVKLGEELYFTVGSQHIPF GASPQDVWTELGRPCGIHQKQVDQMVIHSSSDLRPRTTLCGDYFYNYFNRGLDILFDGQTHKIKKFVLHTNYPGHADFNS YIKCNFVIHGSDVDGSFQEVNNSKQGAITPSTKWEQVKETLGDCGRAAIQTQGSASNPFGSTLVYGYQNIAFEVMKNGYI ATITLFQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 110 | 110 | - | – | |
| PANTHER | 17 | 408 | 392 | 1.0E-189 | ||
| PANTHER | 17 | 408 | 392 | 1.0E-189 | ||
| Pfam | 27 | 406 | 380 | 3.8E-135 | ||
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 111 | 128 | 18 | - | – | |
| Phobius | 129 | 408 | 280 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0383900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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