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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0407000 |
| Transcript ID | LotjaGi2g1v0407000.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|I1J9C9|I1J9C9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0407000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90432228..90432539) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGAGAGATTATTGATGAAGCATTTAGATGCTCCGGGGATGTGGCTACAAGAGAGACATCGTCGCGTTCTTATGAA CAAACACTGTGGAAGATATTTGAGGGCCAAACATCTCCACGGTTTTATGATATATCATGAAACGGTTCAAGACTCTTATG AGCGCAACAGGAGAAGGAGAAACCCAGCCTCAACAGCTGTTCACCAAGCTCTTCATGGGCTTTCATATCTTGTATATGGG AAACGTGATGTGAGACGTTTGATGTTTGAAGTTTTTGACGTTGAGCAGACCCAACCTAAAGAAGTCTCATAG
CDS sequence (LotjaGi2g1v0407000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGAGATTATTGATGAAGCATTTAGATGCTCCGGGGATGTGGCTACAAGAGAGACATCGTCGCGTTCTTATGAA CAAACACTGTGGAAGATATTTGAGGGCCAAACATCTCCACGGTTTTATGATATATCATGAAACGGTTCAAGACTCTTATG AGCGCAACAGGAGAAGGAGAAACCCAGCCTCAACAGCTGTTCACCAAGCTCTTCATGGGCTTTCATATCTTGTATATGGG AAACGTGATGTGAGACGTTTGATGTTTGAAGTTTTTGACGTTGAGCAGACCCAACCTAAAGAAGTCTCATAG
Protein sequence (LotjaGi2g1v0407000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAERLLMKHLDAPGMWLQERHRRVLMNKHCGRYLRAKHLHGFMIYHETVQDSYERNRRRRNPASTAVHQALHGLSYLVYG KRDVRRLMFEVFDVEQTQPKEVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 102 | 102 | 3.8E-55 | – | |
| PANTHER | 1 | 102 | 102 | 3.8E-55 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0407000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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