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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0407000 |
| Transcript ID | LotjaGi2g1v0407000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|A0A151SCA9|A0A151SCA9_CAJCA Ribonuclease 3; Found in the gene: LotjaGi2g1v0407000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90432228..90434351) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCAGAAGTGTACCGTGTTCTTTTTGAAGTCTTTGGAATGGATCCAGATGCTGAGGATTGCCAGCCTAGGTTGCGCAG ACAACTTGAAGATGTGGATTATGTATCAACTGAGTTAGAAACCAAGCTCAGTTGGCAAGATATAGTTACATATAAGGCAA GATTTAAATATCTTCTGTTAAAGTTCAATTTTATTTTTTTCAAAGCAAAAATTAGCTCATAAAGATTGACACATCATGAA CATAGCTCAGACTTTATTAATCCAATTCCATTAGGCACTCAGCTACTTTTCTGCATCATTCCCAAATTTCAACACAAAAA CCCTCCTCTAGAATACAATACTTTATTACTCCCTCCGGTCCTATTTATAAGCAACAAAAAAAAAATTCACATAGTTTAAG AAATGTAGTTAAACTAGATAAAATGCATTAAATATGTCTTGAATCAAAATAAACTTCCAAAATTACCCTTTATTATTAGT GTTGGAAAGTGAAAAAGAGAGAGAATAATTAATGAGACACATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAA AATCATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGATTTTTCTTCTCTTTCATGCTTATAAATA GGACCGGAGGGAGTATTAGATTGAGACACATAAATGATGTTTACTGTTCTTCATTCAGCCTCCTCCAGATGCTCTGTTTG CACATCCAAGACTGTTCAGAGCTTGTGTTCCCCCAGGCATGCATCGGTTCAGAGGAAATATCTGGGATTTTGATTGCAAA CCCCAAGTTATGAAAGCACTTGGATATCCATTAGAAATGACTGACAGGATACAAGAAATTACTGAAGCCAGGAACATAGA GCTTGGACTCGGATTGCAGGTAGCTATACTTTTTCCTTTGCCCTATCAGGCTATTAAAAGCACAGATTTGGCTTCACATG CTAGACCTGGGTTGGATATATCTGTTGTTTTCCTGAACAAGTAAACAAACAAATCTTATTGCTTCTGCTTATGATCTCCT CTCATGCTTCACATTTAATGGCGCCAAAGCAGTTGAGTGATATGTTAAAGTCTAAAAGTTGTCTGTCAAAGTTACAGAGC TATTAAACCCCCCGTGACACTTTCAAGTTCTTATGTGGAGTTTGGGAAGGTAATTTAAAAAAAAAAAATACACTGAGGGG CGGCAAGTGGAAACACAATCGGTAGTTAGTTATGATTGGTTTTGACCAATTTATTTTTACCTGGTTTAGCTGTTTAGGTC TTTGCTGTTTTGCTTGATATAATTTGCTCATCTCCACACAGTTCACTGCATGGCAAAAAAAGTCCTGCCTTAGAAATACC GAAATATTAAGCGTATTTAAAGTTTAACTAGGAAACTGTCAATCTATTTGATTATGAAGTCAACTGGGATCTTCTTAACC CTTTTGTGGAAAATGTAAATTCAATAGTCAAGACTTTGAGAGCTCCCAGTATTCTATCATAACTTATGACTTCTGATGGT GAATGTCATATCTACTTGCAGCTTTGTTTCATGCATCCATCAAAGTACAAATTTGAGCATCCTCGATTTTGCTTCGAGAG ATTAGAATATGTTGGGCAAAAGATACAGGTACTGTTCTTTCTGCTGTCTTTACTCAATAGGACAATTTAACTGCATTTGT TGAAAAACTCTTAAATTATTCATGGGAGATATCATTTATTTATTGCTATACTTATATTTATTATCTAAATTTTTCTTCTC CATTGAATACTGTCTAATATTTTTATTTTATGGTTGCCTTAAGGATTTGGTTATGGCTGAGAGATTATTGATGAAGCATT TAGATGCTCCGGGGATGTGGCTACAAGAGAGACATCGTCGCGTTCTTATGAACAAACACTGTGGAAGATATTTGAGGGCC AAACATCTCCACGGTTTTATGATATATCATGAAACGGTTCAAGACTCTTATGAGCGCAACAGGAGAAGGAGAAACCCAGC CTCAACAGCTGTTCACCAAGCTCTTCATGGGCTTTCATATCTTGTATATGGGAAACGTGATGTGAGACGTTTGATGTTTG AAGTTTTTGACGTTGAGCAGACCCAACCTAAAGAAGTCTCATAG
CDS sequence (LotjaGi2g1v0407000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGAAGTGTACCGTGTTCTTTTTGAAGTCTTTGGAATGGATCCAGATGCTGAGGATTGCCAGCCTAGGTTGCGCAG ACAACTTGAAGATGTGGATTATGTATCAACTGAGTTAGAAACCAAGCTCAGTTGGCAAGATATAGTTACATATAAGCCTC CTCCAGATGCTCTGTTTGCACATCCAAGACTGTTCAGAGCTTGTGTTCCCCCAGGCATGCATCGGTTCAGAGGAAATATC TGGGATTTTGATTGCAAACCCCAAGTTATGAAAGCACTTGGATATCCATTAGAAATGACTGACAGGATACAAGAAATTAC TGAAGCCAGGAACATAGAGCTTGGACTCGGATTGCAGCTTTGTTTCATGCATCCATCAAAGTACAAATTTGAGCATCCTC GATTTTGCTTCGAGAGATTAGAATATGTTGGGCAAAAGATACAGGATTTGGTTATGGCTGAGAGATTATTGATGAAGCAT TTAGATGCTCCGGGGATGTGGCTACAAGAGAGACATCGTCGCGTTCTTATGAACAAACACTGTGGAAGATATTTGAGGGC CAAACATCTCCACGGTTTTATGATATATCATGAAACGGTTCAAGACTCTTATGAGCGCAACAGGAGAAGGAGAAACCCAG CCTCAACAGCTGTTCACCAAGCTCTTCATGGGCTTTCATATCTTGTATATGGGAAACGTGATGTGAGACGTTTGATGTTT GAAGTTTTTGACGTTGAGCAGACCCAACCTAAAGAAGTCTCATAG
Protein sequence (LotjaGi2g1v0407000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPEVYRVLFEVFGMDPDAEDCQPRLRRQLEDVDYVSTELETKLSWQDIVTYKPPPDALFAHPRLFRACVPPGMHRFRGNI WDFDCKPQVMKALGYPLEMTDRIQEITEARNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKH LDAPGMWLQERHRRVLMNKHCGRYLRAKHLHGFMIYHETVQDSYERNRRRRNPASTAVHQALHGLSYLVYGKRDVRRLMF EVFDVEQTQPKEVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 253 | 245 | 1.7E-155 | – | |
| PANTHER | 9 | 253 | 245 | 1.7E-155 | – | |
| Gene3D | 109 | 247 | 139 | 3.5E-10 | ||
| CDD | 118 | 243 | 126 | 2.719E-19 | ||
| SUPERFAMILY | 118 | 244 | 127 | 2.44E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi2g1v0407000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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