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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0415300 |
| Transcript ID | LotjaGi2g1v0415300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein LSD1; TAIR: AT1G32540.2 lsd one like 1; Swiss-Prot: sp|Q93ZB1|LOL1_ARATH Protein LOL1; TrEMBL-Plants: tr|I3S255|I3S255_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0415300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91307353..91310844) extracted from Lotus japonicus Gifu genome v1.2.
CTGTCTACTGCCAAAATGGATGTCCAATACCCATTTTCCTTGTGAGCTTGAAGAACACACCCTCTTTTGCTATATTCCCT CTCTCTCTACTTCATGTTTAACAGCTTGTCAAGGGCCTGTGCTTGCCCCACTTCCACAATATTCAACTGAGTTGAGTTTC TGATGATAGCATAGCACCTTAACACCTCTCTTTTCCTTGGATCTTTCTTCCTACCTTCATGCATGGCTTCCTAAAAGGAA CAAAGTTTGTCATTTCATTTCACTCTGCTTCTTGATTTATTTAACTTGTATGTTCATGGCAAGGCAAACTGTAGTTCAAC TTTCACTTATTTTTATTCCACCATCATGATTCATGATTAACAAGATCACTTAAACCATTCAACTATTTTGCAGGAGTTGT TAAAATGGGAAAAAGAGTTCTTTTCTGCAAATAGAGTTTGGAAGAAAAAGATAACATTTTCTACAATGCCAGTTCCACTT GCCCCCTACCCAACAACACCCCCAGCTCTATACACACATGCGCCAAATGGTACCTTGCTTACTTATTCATGTTATTTATC TCATCACTCACTGCATGGTGTTGAAATGATTGAACACTGTTTTTTTCGGTTGATTGAAAATGTACAATGTTCAATTTTGC TACCATGAGGGGATGGAGGGAGGGGAAAGTTATTTTGAAGACCAAGTCCATTAGATAGATTCACTGATAAAAGTTGGAAA TACCAAATTTACCAAGAAGGAAAGAGATCAATGTTGAGATATTAGATGTGTTTTGTTATGATAAGATAAGATTAGATTTG AGATATGTTTGAAGTAAGATTAATTTTGTAGATAGTGTTTGAGTGGACTAGGAAACCTATTGTTGAGATAGACTAGGACA CTTATCTAATGTTTGAGATAGATTTGGACATTTACCTATGCATTGTACTTCCAAGTTATGTGTAATACACATCATTTAAT TATCAATAACTATTCAGAATATTTCCAGTTCCAAGAGAGAAGTTTATTTCACTTTCCCCTTAGCTATAAAAAGGGAGACA TGATGGGTTCAGTATGAATATGTGTTCAGTGAAATTCCTCTGAGATTCATGATTTATCTGGAATGTGTGGATTGGAGATA TCAGAATTCTAGTTAAATGTCCATTTCTTTAAGTGCAGTTGTTCATTCTAGTCCAGTTTCTCAACTGATCAGACTTGTCA TTTGTAAATTGGACCTGTATTAAGGACAGGACAAACGCTAGAGCCACTGACAGAACAAGAAAAATAAATAGACCGAAAAT ATAACACATTAATCAAAATTAACAATGTCTAATTGGAAGAAGTAATATACAAATTTTGAGGGGGACAGATACAACATTTG AATACTATTTTATTGAGAATTTTTTAAGATCATGTGGTCATTTAATAACTTGTGTCAAAACTTTCCTTGCTGATCAGGTG CACAGAGTCAACTTGTCTGTTCCGGGTGTAGAAACCTTCTGCTATATCCAGTTGGAGCCACCACTGTGTGCTGTGCTGTT TGCAATGCAGTCACAGCAGTTCCACCTCCTGGTATGATGCAGTTTTTCTCCCTAAATCCCCATCCAATCTGTAGTTTACT TCAAACTTCAACTTGCTACCCATGAGGCATTCTTTGCAATGAAGCAAAAAGATGACCAACATTTATGTGAACAGGCACAG AAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTGATCATGTACATCCGCGGCGCCACAAGTGTTCAATGCTCTTGT TGTCACACGGTGAACCTAGCTTTGGAAGGTATTCAGCTATTAACTGGCCTAATGAGCTTCAGATTTTGTGTGTGTGTGTG TTGTGTTCTTTAGTGAGCTAAATGGTTATGATTTATAACAGCAAATCAGGTGGCACATGTCCACTGTGGGAACTGTAAGA TGCTACTCATGTACCAATATGGAGCAGGATCTGTCAAATGTGCAGTTTGCAGTTTTGTAACATTAGTTGAGGTTTGTACA CTAATCTCTTGTTGCCTTACTCTGTAGATTGCTAAATGTGAAAAATTGTTTTTTATTTTTTATTTTTTATGTTTGAGAAT GAATTTGAATGTGTTACTTGATGATGCAGGCCTCAACAAGCATCAATGAGCAGAAAATCAGCACCTAAATCTTTGTGTAG AAGTTGTTACAGACTCCACTCCCTTGGTTTTGATAGTTACTAACTTACTATCAGTAACCTTGAGGAATAACAGGTGCATG AAATTGCAGAGGAAATTCTCTTCACATGTATAGAGCTACTATTGTCCCCTTGAATACAATGATTAAATAATTTTGGCATT GGTTGTATCATGTAGCACACAGTTTGGACTTTGGAGTGCTAGTTGACATGTGTCTACTTCTAGTTGTAAACCTATTCGGG AAGGGGTCTTGTCCCATCAGTGTCTATTTAGCATTTGGAATAGCTGTTTATGATAAGATTATTGATTCTTAGTGCTTTTG AAAATTCGCACATTTATTATTTAGATAAGGTAAGGTACATTTGCCTTACTAATTTTGTCTATGAAGATTGAAAGAGAACC AATCATATCTTTGACAGGATTTTCTGCCTCTTGAATCATCAAAAGGCCCAAGTACGGTCACCGAATCTGTGCTTTCAAAT TAGGTGGGTTCATAAATCCAACAACATAGCATCTGAGTCTGAGTATAGAATCTCAATATGAAATTCATGTGAGGATAATG GAGAAAATAATTTGTTAACATCCTACAATACCCATGAATAAAGGCTGATGTCAAATGAAACAGCACAGAAATACTGATGT AACTCAATTCTCCATTTCTGCATTTAAGACTATAAAAACATATGTCATCAATCTTAATAGACTGCTGCACAGAACAGCTA TAATTAGTATAATAAGAGCCACTAATTCCTTCCCTTATTTTATCTTCTTGAAGCATCATTCATCACATTCCCTTATTTTA TCTTCTTGAAGCATCATTCATCACATTTCTTTCTTTGTCTATGTGAAACCAGCAATAAGAAACAGTTAAGTACAGCTTTA CACTAACATTTTTCCTTCCCAAAGTGCTTTCCCTGATTGCTTTAAAAGGCTTTCAGTGGTGGAGAAAGAAGAAAAAAAGA AAGAAATGACAGCACTCAAACTGGACACGTTAAAAGCCTATGGCCACATTGACTGGCTTTTCCTTCAAGGAGTGCTGACC TCTATGGATTTCATAAATACTAGCATATTATGTGATGTGTCACTTTTGTTTCATAGTGAAATGCTATAGAATCACTTCTA ATTATAAGTTAAAATGCCTAAATTCTAAGAATAAGTGCACTAAATTCTGAGCAAATTGTGAAACCAAAGCATGCGTGGGG ACTCTTAAACATGGGAACTCCATTTCCCCTACCTCTTTATCTTCTGTGCATAATACTGCCTATAAATTTGTTAACAGAGT TAAAAAAACGGTGAGGAAATAAAACAATTATGAAGTTTGACATGTATTGCGG
CDS sequence (LotjaGi2g1v0415300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGTTCCACTTGCCCCCTACCCAACAACACCCCCAGCTCTATACACACATGCGCCAAATGGTGCACAGAGTCAACT TGTCTGTTCCGGGTGTAGAAACCTTCTGCTATATCCAGTTGGAGCCACCACTGTGTGCTGTGCTGTTTGCAATGCAGTCA CAGCAGTTCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTGATCATGTACATCCGCGGC GCCACAAGTGTTCAATGCTCTTGTTGTCACACGGTGAACCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCCACTGTGG GAACTGTAAGATGCTACTCATGTACCAATATGGAGCAGGATCTGTCAAATGTGCAGTTTGCAGTTTTGTAACATTAGTTG AGGCCTCAACAAGCATCAATGAGCAGAAAATCAGCACCTAA
Protein sequence (LotjaGi2g1v0415300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPVPLAPYPTTPPALYTHAPNGAQSQLVCSGCRNLLLYPVGATTVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLIMYIRG ATSVQCSCCHTVNLALEANQVAHVHCGNCKMLLMYQYGAGSVKCAVCSFVTLVEASTSINEQKIST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 145 | 145 | 2.0E-72 | – | |
| PANTHER | 1 | 145 | 145 | 2.0E-72 | ||
| TIGRFAM | 26 | 56 | 31 | 3.9E-12 | ||
| Pfam | 29 | 53 | 25 | 4.5E-10 | ||
| TIGRFAM | 65 | 94 | 30 | 9.0E-14 | ||
| Pfam | 68 | 92 | 25 | 1.6E-11 | ||
| TIGRFAM | 103 | 133 | 31 | 7.9E-10 | ||
| Pfam | 106 | 130 | 25 | 7.0E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0415300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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