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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0417200 |
| Transcript ID | LotjaGi2g1v0417200.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycine-rich protein; TAIR: AT5G47020.1 MraZ; Swiss-Prot: sp|P35207|SKI2_YEAST Antiviral helicase SKI2; TrEMBL-Plants: tr|G7JYP6|G7JYP6_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi2g1v0417200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91509057..91510031) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGGGAAGCATAATTCACATTCACAGGGCAAGAACTGTGATTGTTGATACTGAGGGTATGATTACTGCATCCGAATT AGGTAATTAAAATTCTTTGAAAACCTTTTATGGCTACTTTCTGCTCGTCCCTGTATTCCATGTTAGTAAAAATGCTATGT AGCAACAAAGGATAGCAGAATTTTAAGATTCTGATTAGACCATGACCTTTTCAGGTTGCACTGAAGGTATTGGCAAGGGA AACTTTTTGAATGGAGCTGGCGGTGGTGCTGGACATGGAGGAAGAGGAGGATCTGGATATTTCAATGGGAGAATGAGTAT TGGCGGTGATGAATATGGAAATGCTATTCTTCCATGTGAATTGGGTAGTGGAACTAAGGGCCCTAATGAGTCATATGGGC ATGTTGTTGGAGGCGGGATGATTGGTAATAATTTTAAATACGTTTGAGTATATATGTTTCAAGGGATTCTCTGGCTTGAC TTCTGACTACTTAGCATGGATGCAGATGGCAGCAAATGCTATATCTGTCTTTGCCTCTTGTCTTAATATAATGGAAAATA TCTACTTTTTATAATATTCTCCAATCACAGTATTTTTTGTTAATTTTGGCTAGTGATGGGATCCATTCAGTGGCCACTTT CGAGGCTTGACCTTTACGGGTCCTTGAGGGCAGATGGTGAAAGCTTTAGCAAAGCAATAACAAGCAGTGATGGATCTTTG GTTGGTGGTCTTGGTGGAGGTTCTGGTGGAACAGTCCTGCTTTTCCTTCAAGAACTCAGGATTTTGGAGAATTCCTCCTT ATCAGTTGTTGGTGGCAATGGTGGCTCCCTTGGTGGTGGTGGTGGAGGTGGAGGTCGAGTTCATTTCCATTGGTCAAAGA TTGGTATTGGGGAGGAGTACGTGCCTGTTGCAAGTATCAGTGGCACCATGAACTATAGGTATACATATTAATGATGCCTC TGTTATTGTCTTTAG
CDS sequence (LotjaGi2g1v0417200.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGAAGCATAATTCACATTCACAGGGCAAGAACTGTGATTGTTGATACTGAGGGTATGATTACTGCATCCGAATT AGGTTGCACTGAAGGTATTGGCAAGGGAAACTTTTTGAATGGAGCTGGCGGTGGTGCTGGACATGGAGGAAGAGGAGGAT CTGGATATTTCAATGGGAGAATGAGTATTGGCGGTGATGAATATGGAAATGCTATTCTTCCATGTGAATTGGGTAGTGGA ACTAAGGGCCCTAATGAGTCATATGGGCATGTTGTTGGAGGCGGGATGATTGTGATGGGATCCATTCAGTGGCCACTTTC GAGGCTTGACCTTTACGGGTCCTTGAGGGCAGATGGTGAAAGCTTTAGCAAAGCAATAACAAGCAGTGATGGATCTTTGG TTGGTGGTCTTGGTGGAGGTTCTGGTGGAACAGTCCTGCTTTTCCTTCAAGAACTCAGGATTTTGGAGAATTCCTCCTTA TCAGTTGTTGGTGGCAATGGTGGCTCCCTTGGTGGTGGTGGTGGAGGTGGAGGTCGAGTTCATTTCCATTGGTCAAAGAT TGGTATTGGGGAGGAGTACGTGCCTGTTGCAAGTATCAGTGGCACCATGAACTATAGGTATACATATTAA
Protein sequence (LotjaGi2g1v0417200.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGSIIHIHRARTVIVDTEGMITASELGCTEGIGKGNFLNGAGGGAGHGGRGGSGYFNGRMSIGGDEYGNAILPCELGSG TKGPNESYGHVVGGGMIVMGSIQWPLSRLDLYGSLRADGESFSKAITSSDGSLVGGLGGGSGGTVLLFLQELRILENSSL SVVGGNGGSLGGGGGGGGRVHFHWSKIGIGEEYVPVASISGTMNYRYTY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 205 | 205 | 2.2E-102 | – | |
| PANTHER | 1 | 205 | 205 | 2.2E-102 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0417200.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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