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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0009000 |
Transcript ID | LotjaGi3g1v0009000.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q20497|MED12_CAEEL Mediator of RNA polymerase II transcription subunit 12; TrEMBL-Plants: tr|C6T0Q9|C6T0Q9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0009000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1036568..1041425) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAGAATAATTGTTTTGTTTAACAAAGGGACCAAAAAGATAATTAACCTTATTGTTGAAGACAGAGTAATTAAATTA AATTAATAAAGAAATAGTCAATCCACCGTCAACATATATATTATTTGCCGGAAAAGAAGAAAGAAACAGAATCCAAAACA AACACCACCCTTCTCAGAAGTGATGCTCTCGATTTCAACTTAGGTAAAAAGAGACAGAACAGGTTCCTTCTCATCCATGT TATTTCCATTTCTAATCAACTCTATCTGTTCTTCACTTCGATATATTTTTCTAATTTATTCTCTGTTTATTTTATTTTAT TTTGAATTTTCAGGATTGGTCTCTGAATTTTTCTTCCAGGAATCGCAGTTTGGCTTCTTCAATTGCCCATAAATTCATTG TAACAGATCTGAATAAGGTTTTTGCGGTATTTCAGTCACTGCATGCATATGGGGTATGTGTTCTGAATCCAGCTGAAACT AAATCAAAATAGTCCCTTTTTCAGTTTTACTTGCAATTTTCACTTTTATCTTTTGTGGGTATCAATGATTTTCTTCCAAT TCACCGACAAAGAGAAATCATGTAGTGGTATGTGTATGACTCCAATGATTGATCATTCTAGGTTGGAAGCTGGGGATAAT TTTTGTTTTCTTTTTTGTTTATATGGTTGTTTCGAAAAAATTATCAAAAGGGACTATCACTAATTGGTGAGTTGGAGAAC TTGTACTTTTTCCTCTCTTAATAATGAAATCAGAAACAGAATCAAAATCAGGAAGCTGCGAATTTATAGTTGTTTATGTG CTTCGATTTCTCATTTATCTTATTGAAGTGGTGCTGTGGTTCGAACACTCGTGGTAAAGGCAAGGAGCAAGGTGTTTCTC TGTTTTCTTTTGGTCCTAGTGAGCTTATATTTTCTGATCACCATCGTAAAGGCGTCGAAGTGCATATCCGTTTTATGGAA GTTGTCTGTCATAACTCAACTACTATTTGTTAAAAAACATCACTGATTAGATTATAGTTTTACGGATGTGAACCCGATGA TCTAATTCTGTGCTTAAGGATCAAAATAGGCAATATACCTACACTTGAAGGAGAACACGTCGGTGTTTATGATTTTCTTT TAACTGGTTACTAGAAAATGCCGTCTTAGAATCATTAGATGGTTGCTACTTGCTATTCCTCCATTTGACCTTAATGTAGA TAGCTGTGAAAACGCTGGTATTGTGACACTTTTAAACTATGTTATCCGATTTATCATTTATGTAGACTCAGATGTAAGAA CTTTAATCTGGAATGCAGAATAGGGCCTTGAATAATTAGTTTGCTTGTCTTTACATACTAATATAATCATACTGATAGGA AACCTAGTTGTTTGATACTTTGATATTTTTTTGGATATACTCGTAATTTGCGTTTTCTATTACTTTATCATGAGAGTAAT TCTGCTGGAACCATTTCTTTTGTTAAAAAAGTATAATTATAGGGACTGAACCAAGTTGCCACTATTAAACTGTGGTATTT GAATTTGTGGAGGCTCTTCTAGACAATCATATAATTGTATTGTGATGTATAACAGAATCTAATGTGATTGTAACAGAGCA GTGGTTGTCTTGGACTCCATAAAAAGCCCACGCTAATTGCTACAGCAGATGTGCCATCAAAACGATTGACACAACACAAT AAGGCGGTGAAGAAAGCTAGCACATCAGAGGATTTCTGGACCACCAGCACACATGATATGGACAACAGCGCTGTTCAGTC ACAGGGAAGCATCTCATCAACCAGTGTAACCAACCTACCTGCTGATCCTCATGCTGGTTCTTCCAACCCAACTGAATTTG TAAACCATGGTACCATATGTCGTTGCTTTTAGCTTCCAGATATTTTACTGTATAGACATGATAATTGAATATGTATTTTA GTCAAGAAATGTTTGAAAGAAAAAAGGAATATTATGGGTTTGCATGATGAAAACTGAAAGCACCTATTGCCATTGGTTGG ATTTATTTTTACTTGCTCGTTAACCCGTGGGTTTCATTTATGGGCTGTTGGCTGACTATTGTGGGTGCCCAGTGCAAGAT GTATCTTGTTGCAAGTTGCTTGTTGAATGCTGAAGCAATATATGAAATGTGGTTTGAGTGTAACTTTCATCTACTCTTCC CTACTTCATCAAGATGCCTTGGTTGGTAACTTCTTGGGATACTGGATTGGATTCTTACATGATAGACTGTTATATTTAAT TTTCCAATAATATTTTTTTAGGTTTGAAGACAACAGTTCATATACCTTTCTTTTGATTCGTGCAGTGTTCATTTGTGCAA CTTTGTTAATTGTCACTTATTATTTTCTTTTGCTATATGCTTTTCTCAAGTTGTCTTTCTGAGCTGATCTGATATGGATA AGTTACCTTTCATATCACTGAATTGGCTTCATGGAAATTTAGTCAGTTTTTCATTTGTCTCCCTATTTATATGTTGTTGT CTTTCTGCCTGTATTAAATTGTAGTAAATGAGATTTTGGAAGATGTGGAATCGTTGGTCATTTTACTTGAAAGTTTTCTC ACAGAAATTGGCAAAGATAGGAAGGGAAAAGTTATCAACAAAGGTTTTTTTTTTGGCAGGTCTAACTCTTTGGAATCAGA CACGGCAACGTTGGATAGGAAATAATAAAAGGCCTGAGAAACAAACAGAACAATCGCGTGAACCAAAATTGAGGTACACT ACATTGTTAGATTAGTTTTACTAGCAGTATGTTTTTAGTAAGCTAAATTTAATCAATGGCAAAAGAAGCTGAGGACAACT CCCCCATATGAGAACCAGAAAAAGCAAGCCCAACCAACAGCCGTAGCAAGGCCCCCAACACCAACAAAAGAACAGACCAA AAAACACCTTACAAAACCTAAAAAAAGAAACATGAAAACAACCAAGACAAAAAACCCAAAAGCCTCCAACAACGCACACA CCACCACTAACCCCACAAACAAAAAAGAAAAGACCAAGATCAATCTCAAGAAGACCAAGCCTCCCTCATCTCCTCAAGTC CCTGAATAGCTTCCTCATCGGTACTGTCATATTCTAGGCCCAAAAGGTCTTACTAGCAGTATTGATTTATCAATTTTGTT ATTCTACTTTTATTCATTGGGTGAGTGTGGTGATGCTGTATAGCACCCTTTTGGTTTCATTCCTTCTTAGATCCACCATG CCTTCAAATTTTGAGAATGCATGAAGTCTTCACAGATGTTTTCTTGGAATCTGATAACGTGTTAACTTTGTAAAAACTTC AGTCAGTTGGAACCTTTATGAAAATTCTCGAATTTCTACTGTTTACATATGTTGAAGTTGTGTTAGGATCACTAGAAAAT TGCTAATTCGTCATAGTAGCCCTGTATTCTTGTCTTTAATTTTTAATACTTATACAAGTTGACAAGGTCAATTCCAAATT TGTCTTTTGCTGATGAAAATATGTAATGATTCGGCAGTTGGAACGCAACGTATGATAGTTTACTGGCGAGCAACAAGCCA TTCCCTCAGCCTATTCCCCTTGCGGTAAGCATCTACTTCTGAGCCACCTTGCAGTTTAAGTGCAATAACGGGTTTATCTG ACATGGCTTGTATGTATCAATATTGTTAGGAAATGGTAGATTTTCTAGTGGATATCTGGGAACAAGAGGGCTTGTATGAC TGAACCATAAAGATTGAACGAGTGTTGTATCTATGAAATAATTTTAGTTCTTTATTCTGAAGAGGAAATTGGGCATTCTA CAGTTTGTGTATCTATTGTAACATTTAAGATGAGGAGGAATTTTCTCCACAGGCCTTTGGCATAATTGTATTATAATTTC ATTTAATTAATGGCACTGGCTCTGAAGAGGCTAGGTTTACAGAAACATTATCCTTTTTTTGCATCAATAGCCACAACATG TATTTGCTTCTCCTTTCCTTAATGTTTGAACTTCGAATTGACCTGTCTCCTGTGTCGAATCTTTGTATGAATTACTTTAA GAAGAATAATCATGAATTTTTTTTAATGGAAAATAGCCATTTACCATTGATATCATATTCCTGGCTTTCTGTTTTTACAA TCAAATGATGCAGTTAGAAGTCAAATTGCAAAAATCTGTGATAGGATCATATTTTGGCTGCGTGCGTGTTGCAATCGTAG TAATCATCAAGTGAGATAAAGATTGAGAGCTCCTTATTACTGTTTTCCACTTCAGATAATTGTGCAATCTAAAGAATTCA GAGTCAAGCTCCTTATTACTTAAGTTGTATGAATTCCTTGTATAATCATCAATATCAGCTAAGCCAGCCAATCCTCTCAC TCATGGGAGGTTTTCATTTTAATTAGAAGACACTTGATCTTCAAGGTCAGCAAAAGGGTTTGGTTTTGAAAAGATTGCAG CAAAGAGTTTTTGGTTTCAGTTCCATAATGGGTCAGAGCCTTTTAATTGCGGTTAAGCTGCATTTTGTAGTCGTGATACC GATACCGATGTGGGGACTATAAATAATACTCCCTTTGTTTTTGCCTTGTGGTGCTAAGCAATGTTAAAGGATATTGTACT TAAAGGATGTTGAACTTAATGTAACCATTTCTAGGATTCAGAAGCCCACAATGAAAAGGATGTGAAGCAACCGTACATTG ATCAAGTACTTTTGTTAAGGTTGTGAGTTTTAGATTGGAGAACTAGCGGTGGATTTCTGAACTAGTGTTGGAGCTTGTAA CACTTTCTTTTCTAAGTCATGGTTGCGTTGAACTTTTCAATGTTCGACTTTGGTTTACTTCTTAGACTAGCCCCTTCGCA TGATATAATCATATAAATTATTTTTTCAAAGTTTGATCTAGTGTTTGAAAACTCAGAC
CDS sequence (LotjaGi3g1v0009000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATATGGGTGGTTGTCTTGGACTCCATAAAAAGCCCACGCTAATTGCTACAGCAGATGTGCCATCAAAACGATTGAC ACAACACAATAAGGCGGTGAAGAAAGCTAGCACATCAGAGGATTTCTGGACCACCAGCACACATGATATGGACAACAGCG CTGTTCAGTCACAGGGAAGCATCTCATCAACCAGTGTAACCAACCTACCTGCTGATCCTCATGCTGGTTCTTCCAACCCA ACTGAATTTGTAAACCATGGTCTAACTCTTTGGAATCAGACACGGCAACGTTGGATAGGAAATAATAAAAGGCCTGAGAA ACAAACAGAACAATCGCGTGAACCAAAATTGAGTTGGAACGCAACGTATGATAGTTTACTGGCGAGCAACAAGCCATTCC CTCAGCCTATTCCCCTTGCGGAAATGGTAGATTTTCTAGTGGATATCTGGGAACAAGAGGGCTTGTATGACTGA
Protein sequence (LotjaGi3g1v0009000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHMGGCLGLHKKPTLIATADVPSKRLTQHNKAVKKASTSEDFWTTSTHDMDNSAVQSQGSISSTSVTNLPADPHAGSSNP TEFVNHGLTLWNQTRQRWIGNNKRPEKQTEQSREPKLSWNATYDSLLASNKPFPQPIPLAEMVDFLVDIWEQEGLYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 157 | 155 | 1.4E-81 | – | |
PANTHER | 3 | 157 | 155 | 1.4E-81 | – | |
MobiDBLite | 44 | 79 | 36 | - | – | |
Pfam | 46 | 112 | 67 | 1.5E-10 | ||
Pfam | 116 | 157 | 42 | 9.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0009000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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