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IPR025124 is a Gag1-like, clamp domain.
<p>This entry represents a domain found in a group of sequences from fungi and plants, including Gag1 from Saccharomyces cerevisiae (YLR407W), which interacts with Cka2, the fourth subunit of the eukaryotic kinase CK2. Gag1 is organised into three domains: lock, Gag and Clap (this entry). This domain, previously known as DUF4050, has three regions: rear, hinge and front [[cite:PUB00153176]]. It contains two conserved sequence motifs: IPL and FLVD.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Uncharacterized protein TCM_037003 [Theobroma cacao] gi|508782229|gb|EOY29485.1| | 5 | ||
| – | Uncharacterized protein TCM_037003 [Theobroma cacao] gi|508782229|gb|EOY29485.1| | 3 | ||
| – | Uncharacterized protein TCM_037003 [Theobroma cacao] gi|508782229|gb|EOY29485.1| | 4 | ||
| – | Uncharacterized protein TCM_037003 [Theobroma cacao] gi|508782229|gb|EOY29485.1| | 3 | ||
| – | Uncharacterized protein TCM_037003 [Theobroma cacao] gi|508782229|gb|EOY29485.1| | 4 | ||
| – | Uncharacterized protein TCM_037003 [Theobroma cacao] gi|508782229|gb|EOY29485.1| | 5 | ||
| – | Uncharacterized protein TCM_037003 [Theobroma cacao] gi|508782229|gb|EOY29485.1| | 5 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508783826|gb|EOY31082.1| | 10 | ||
| – | Uncharacterized protein TCM_037003 [Theobroma cacao] gi|508782229|gb|EOY29485.1| | 5 | ||
| – | Uncharacterized protein TCM_037003 [Theobroma cacao] gi|508782229|gb|EOY29485.1| | 5 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10; TrEMBL-Plants: tr|C6TNH5|C6TNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0383900 | 4 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q9ZAH5|ALR1_STAA8 Alanine racemase 1; TrEMBL-Plants: tr|I1K8V0|I1K8V0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0383900 | 4 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q9ZAH5|ALR1_STAA8 Alanine racemase 1; TrEMBL-Plants: tr|I1K8V0|I1K8V0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0383900 | 4 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10; TrEMBL-Plants: tr|C6TNH5|C6TNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0383900 | 4 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q20497|MED12_CAEEL Mediator of RNA polymerase II transcription subunit 12; TrEMBL-Plants: tr|C6T0Q9|C6T0Q9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0009000 | 5 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q6FT96|MDV1_CANGA Mitochondrial division protein 1; TrEMBL-Plants: tr|I3SSQ5|I3SSQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0009000 | 5 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q6FT96|MDV1_CANGA Mitochondrial division protein 1; TrEMBL-Plants: tr|I3SSQ5|I3SSQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0009000 | 5 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q20497|MED12_CAEEL Mediator of RNA polymerase II transcription subunit 12; TrEMBL-Plants: tr|C6T0Q9|C6T0Q9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0009000 | 5 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q02400|LE193_HORVU Late embryogenesis abundant protein B19.3; TrEMBL-Plants: tr|I3T388|I3T388_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356900 | 5 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q02400|LE193_HORVU Late embryogenesis abundant protein B19.3; TrEMBL-Plants: tr|I3T388|I3T388_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356900 | 5 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1; TrEMBL-Plants: tr|A0A0L9TR28|A0A0L9TR28_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271700 | 10 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q9LAI2|MTB1_BACSQ Modification methylase BslI; TrEMBL-Plants: tr|K7MN23|K7MN23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0060300 | 9 | ||
| – | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q9LAI2|MTB1_BACSQ Modification methylase BslI; TrEMBL-Plants: tr|K7MN24|K7MN24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0060300 | 5 | ||
| – | DUF4050 family protein; TAIR: AT3G54880.1 zinc finger protein; Swiss-Prot: sp|A0R3I7|MPRB_MYCS2 Signal transduction histidine-protein kinase/phosphatase MprB; TrEMBL-Plants: tr|I3SNZ7|I3SNZ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0270000 | 5 | ||
| – | DUF4050 family protein; TAIR: AT3G54880.1 zinc finger protein; Swiss-Prot: sp|A0R3I7|MPRB_MYCS2 Signal transduction histidine-protein kinase/phosphatase MprB; TrEMBL-Plants: tr|I3SNZ7|I3SNZ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0270000 | 5 | ||
| – | DUF4050 family protein; TAIR: AT3G54880.1 zinc finger protein; Swiss-Prot: sp|A0R3I7|MPRB_MYCS2 Signal transduction histidine-protein kinase/phosphatase MprB; TrEMBL-Plants: tr|I3SNZ7|I3SNZ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0270000 | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 3.85 |