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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0015400 |
| Transcript ID | LotjaGi3g1v0015400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASC3/barentsz eIF4AIII-binding protein; TAIR: AT1G80000.1 CASC3/Barentsz eIF4AIII binding protein; Swiss-Prot: sp|Q12019|MDN1_YEAST Midasin; TrEMBL-Plants: tr|I1MCM2|I1MCM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0015400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1630681..1635871) extracted from Lotus japonicus Gifu genome v1.2.
CTTATTGCTTTTTTAGACTCTTCTCTCCGATTTCAAATTACCTTATCTAGGGTTTCGCACAACGCAACAACCCTCTTCTT CCTCTTCCCTTCAATCCCCAAATTCCCCAAATCAAACCAATACTCATCAAATCCAATCCCCTCCCACCACCTTCAATCGC CATTCACCGTCTCGATTCGCCGTTTTCGGTCTCGATTTGCCGTTTTCAATTTTCCCCAAAATTTTTGGGTTTTTCAATCT ATTAGTGTTTTTCTGCTTCGGATTGATTCGTGTTTCTCTCTGATTGGTTTCTGGGGTTTAGTGCATTGGTGGGAAGTTTC TGTTTTTGGTGAGTAGCTTCAATTTGGGGGTGTTTGGTTTCTGGGGAAGTGTAGGGGGTTTTTGAGGGATGGCTACAAGC AGTGCGGGTGAGGAAGATGTTGAGTATGAGAGTGATCCTGAGGAGCTCAAGAGATCGCTGTCAATGCGGCGGAGGCGTGA GGCGAGTGATGATGAGGAAGGGGAGGATGGAGGTGGAGAAGAGGAAGGCAAGGGTGCGGATCGGCGGTCAATTCGTTCTG ATGAATCGGAGGATGAGGGTGGAGTGGCTGATTATGATGACGAAGAAGAGGGGTTATTGGAAGAAGAAGTAGAAGTAGAA GAGGAAGAAGTAGTGGAAGTGAAAGTGGGAGAAGATGAGGAAGAGGTTTATGAGGAAAGGGGTGTGGAGGAAGGAGTTGT GAATGGCTCAGTAGTTGTGGTGAAGGATTCTGATGCTGATTTCAAGCCCAATTTGGAAGAATCAGGGGACATGGAGGAGG GTGATGGTGAAGAGGAGAAGAAAGAGACTGAACCGTTTTCAGTGCCCACTGCTGGAGCATTTTACATGCACGATGACCGC TTCAGGGACAATGCTGGTGGCCGTGGCCAAAGGTATGTTACTTGGTTACTTTTAAGACTTGGTGCTGATATCAGAATGTT TTTTTTCCTTATTCTGTTTCCTTGTCTAATTTAGGCGGATGCGTGGTGGAAGGAGGCTGTGGGAGTCCAAAGATGAGAGG AAATGGGGACATGATAAGTTTGAGGAAATAACTTTTCAGGATAGGCCCTACAAAGAGGTGATCATTTTGTCAAAAATGCA CTAGTAGAGGTTTTTTTGTATTTTGCTTCCTGAATTGGAGCCTTTCTAATGCATTATTCTGTATGAAATTCAGGGAAGGA GACCTTCTAGGGGTAATTTTCGGGGCCGTGGTAAAACTCGAGGCGTTGCTCGTGGAGGGTATGTTCGTGGTGATAGAAAA AGTTATGATGACAGAGACAATCAAAATCAGGTACCAAAAGGTGTTGTGCGAGGGAGAGGTCCCCGAAGGTACGAGCCTAC CTATAAAAACAATGATGCAGCACCCCAGATGCAAAATAGACAGTGAGTATTGAACTTTTCTTTTATTAGTTTGATACATG CTAGCTATATGTCGGTTTTCTGATTATAGTTTTGCTTTCCTTTCCAAGGTCCGGGAAGCCTGTTTACAAAGCTTCAAATG TTAGTTCGGGGAGAGCTTTCACACCCATTTCTAATTCAGAATCTGATCCTGTCCCTGCTAAGAAACCAGTTCTTGCATCA AACTTGAATTATGCATCTCCCCCCTTTTACCCTTCAGGCTCTGCTAACAAAGACACAAGCCTGACACCAAAACGGGATGT CCAAACTGGCAGTACAAGCAGGAATGTTCACACTGGTGTTATGGGTGAGGGTTTTGTTGCTCAACAAAACAATGCCTTGC ACAGGGGAAAGAATATCGTTGATTCTATCAGCATGGACAAGCTGCATATTGATGGTTCCTTCCGCCCATCTGTCGGGAAG CCTTTGAACAATTTGCACATGCACCCACCTGGATCTTCTGAAGTCCGTGCTTCTCAATCTACTCATCCAAGGGCTTCTGG GAGGGGTGGACCAATCCCAGTTCAGATGAATTATCATCCTGCTGCCTCACATAATCAAGTAAATAAAATAACTCCAAGTC CAACACAATACCATGCCATTCAGAAAACTTCTGCTCCAGGGCGAACTTCAATGCAAGCCCCTGCTCCACAGTTGGGTCAT CGGCCTGGGAGCTCATCTCCCCCTAAAGAATCTGTGGCAAATGGTTCAGATGCTGGAGAAATTGATGTAGCTTCAGAATC AGGTAAATCCATGGGCACATTGGTTGGAAATGAAAGAGCAGTTTCCCAAGGTAATGGAAGAGGTTCTTTCATTTATGGTG GAGCTATGGGCACTCCTGGAAATATGGGTGGTGGTCGTGGGGATCAGAACTTCCCAACCTTCTTGCCAGGTTGGTTTGAT TTTGCTGTTTTCTTTGTTAAACTATCAATACTGCTAACTTAGAGGGAAGTTTTGATACAATCTATTCATTGCAACTCCTC ACCGCCGTTGTTGGAATGTAAATTCTCATTTCTCAATGAGAAGTTGTAATGTCACTAGTCTGTGAAAAATCAAGTGATTA TTTTATTCACTATGTTACAGAGGTTCAACTGAGTATTTCATGATTTATCAACATCCATCAGTTGTTTTTCTTGTGTATGC GCTTGTTATCTTTTCAAGAAAGATTTAATGTTCCTTTCCTTTTAGCTTTTCTTTTATCAGTTCTAATTTTCATTGGGCTC TGGTGGGGCACAGTTATGCAATTTGGAGGGCAGCATCCTGGTGGTATGGGAGTTCCTGCTGTTGGCATGGCATTCCCTGG ATATGTTGCTAATCCTCAACTTGGTATGGGAAGCTCTGAAATGACATGGTAAGTTTATTAAACCTCTGAAGTTTATCTGA TATATTGAATAATGTTTAGAGAGCTAAACAAAGTGTGTTGCTGATTTGTAATTTTTAGTCCTTTGTCATGTCTGCTCAAC CTGTTGTGTGGGGCACTTGCAATTTTCTTTAAGAATACTCTATCCTGTAGGATTGCTAATCATGATAACGGAAACATTTT GAGTAGTTATATGCAAAAAAAAGAGAAGTCTATTCTTTGTTTACTTATCTTTTAAAAATTTCTTTTTTGTTCTCTTATTG CGTTTTTAACTACTTCCTTTTCTTGTATAGGCTACCAGTTTTGGCTGGTGCTGCAGGAGCTCTAGGAGCTACTTATGGCT CACCCTATCTCACTGTTGCTGGTGCTTATCCTGGTCGGCAATCAGGACAGACATCTTCAGCGGCTACTACAAGGTTGGTG CTTTTATGGCTTTGAAATGTCGTCACATGATTTTAATATATTTTACTTCTCTATATTGTATGGTTGGGTCTTATTGCATT TTTATAATAACTTTATTAATTGATGCATACCTAACTTGTTCAAAATGGTTCTTGCATTTGTTGATCTCGCAACAGTGCTA TTTATAGTGTACATAAATACATAATCATGTGGGTAGGGGTGGGGATGTTCAATGAAATAGATTTTTGTAATATTTCTATT GCCATGCTAGCTTTGATGTCGCTTTAGCTTTTTTTTCTGGCTTCGTGATTTCTGTTTTCGTTATTGAATCTTTTGCAGCA AGGAAAATAATGTGAGTAAAGCTAATAATGAATGGGAGCCACCTCAGAGACCTGGTACGACATCCATTGAGATAATCATT TTCCATTGATATAGTTTACTCGTTGCCAGTGGTTGCTAATCTTGTTAATTTATTATTTGGAAATGTTCTGTCTGCAGAGC CTGTAAATGATGAGTTTGGTCAGCGGCAAAATAAGCCCCGCAGGCAAGTCAAATTGCAGATAGATGTTCATTTTTGTGGT TATTTTTTAAGCACTCAAGCATGGTTTGCTACTTCTGCTTATTTTTTTTTAGGTCATCTTCTGTACTCCTATAGTACTGA AGTTGCTGTGCTCCCTCTCTGACATACCTACAGTTATTTATTGATTTTAAAATAATAATAAAGGAATAACTAACCATATA AAGATAGATGACAGTATTATTGTTGATGTAGTACGTATTATTATGGCACTGAAAAATATTCCGGTTTGCGGGGTGGGTGG GAATACTCTTGATGTTATTGGCATGATTTCTTAAATTGGATCATAATTACAATGAAATAATGAATGTTGGTTGTGCTCGA TGCAGATACTCAGAGATGAACTTTGGGCAATGAAGTATTGTATAGTATGCAGCATGTTTGAATAAGAAGATATGGTTAGT TGCTCCCAATTAATTCTTTATTATTCTTTTAATAGTTTCACAATTTCCTAACGTTTTAGTAATTTTCGCATTTCAGGCCT TCTTCCTCCAGGCCCTCTGTTCTCCAGCTTTTGCTCTGGAGTACTTTGGGCCGCTATTGGTTTCGAGAATTTTTAGGTAA TTAAATAAAGTCTAATCTCTGAGGATTTTTGGAGTTATTGTTACCTTGGGCTCTTTATGCTGATGCGCCTCCTTTTTGTT TTCTCCCTCTACACATTTTTCTTCCTTGCAGTTATATAACGCCTGTTGATGCTGTCCTCCATTTAAAGAAGTTATTGCAG CTTGACAGGTGGTAGTTGCTTGTGTAATTGTGAGGTAAAGATAATCATGAAGTATAAATGAATTTGCAGTTATAGCATGT TTGGATCAAAATTCTGGAATCAATTCTGGTACCTAGAAGCTACTCACATATTGACTTCAGAATCAATTGTCAAACATGCA TTTAATATCCTCTACTTATATTTGATGCCTAAGGGACAATTGATGGCTTCTTTGCAGGTTTTTCTTTGCGGTTTGCTTTG GTGAAGCTTTAGTGAAAGACTGGCAAGCTTCTCTACAGCTATGAATATGGGAAAAATGGTAAATGCAGCAACTGAGTGTT CGTGAAGTCATAAAGCTATTCTTGTCATGTAAATGCTTTTCTTATCATTCACCTGGTATGATGAACTTGTGGGTAAAATT ATAATGAGACATTTTTAATGAATTGTTCAATTCACTTTCTTTGATGATGTGGTTTTGTTTCTTCTATTGAGACTTGCTGT GTTGTCAAAGTTGCTAGTATTGTTACCAAGGACAAAATTGGTGTTCCATTCAAAGGATGGTTTTGATTATGTCATTATGT AACTGATTGTCTAGACTGTTACTAGTACTACCTTTGAAACTTGGCTTGAAGCTTTTTCTTCATGTGGCACTAGTGCTCAA TTTGTAAGATAGAAAAACAATTCTAATTGGGTAATGATATATACACACCTCTTTTTTTATACACTTCATTT
CDS sequence (LotjaGi3g1v0015400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACAAGCAGTGCGGGTGAGGAAGATGTTGAGTATGAGAGTGATCCTGAGGAGCTCAAGAGATCGCTGTCAATGCG GCGGAGGCGTGAGGCGAGTGATGATGAGGAAGGGGAGGATGGAGGTGGAGAAGAGGAAGGCAAGGGTGCGGATCGGCGGT CAATTCGTTCTGATGAATCGGAGGATGAGGGTGGAGTGGCTGATTATGATGACGAAGAAGAGGGGTTATTGGAAGAAGAA GTAGAAGTAGAAGAGGAAGAAGTAGTGGAAGTGAAAGTGGGAGAAGATGAGGAAGAGGTTTATGAGGAAAGGGGTGTGGA GGAAGGAGTTGTGAATGGCTCAGTAGTTGTGGTGAAGGATTCTGATGCTGATTTCAAGCCCAATTTGGAAGAATCAGGGG ACATGGAGGAGGGTGATGGTGAAGAGGAGAAGAAAGAGACTGAACCGTTTTCAGTGCCCACTGCTGGAGCATTTTACATG CACGATGACCGCTTCAGGGACAATGCTGGTGGCCGTGGCCAAAGGCGGATGCGTGGTGGAAGGAGGCTGTGGGAGTCCAA AGATGAGAGGAAATGGGGACATGATAAGTTTGAGGAAATAACTTTTCAGGATAGGCCCTACAAAGAGGGAAGGAGACCTT CTAGGGGTAATTTTCGGGGCCGTGGTAAAACTCGAGGCGTTGCTCGTGGAGGGTATGTTCGTGGTGATAGAAAAAGTTAT GATGACAGAGACAATCAAAATCAGGTACCAAAAGGTGTTGTGCGAGGGAGAGGTCCCCGAAGGTACGAGCCTACCTATAA AAACAATGATGCAGCACCCCAGATGCAAAATAGACAGTCCGGGAAGCCTGTTTACAAAGCTTCAAATGTTAGTTCGGGGA GAGCTTTCACACCCATTTCTAATTCAGAATCTGATCCTGTCCCTGCTAAGAAACCAGTTCTTGCATCAAACTTGAATTAT GCATCTCCCCCCTTTTACCCTTCAGGCTCTGCTAACAAAGACACAAGCCTGACACCAAAACGGGATGTCCAAACTGGCAG TACAAGCAGGAATGTTCACACTGGTGTTATGGGTGAGGGTTTTGTTGCTCAACAAAACAATGCCTTGCACAGGGGAAAGA ATATCGTTGATTCTATCAGCATGGACAAGCTGCATATTGATGGTTCCTTCCGCCCATCTGTCGGGAAGCCTTTGAACAAT TTGCACATGCACCCACCTGGATCTTCTGAAGTCCGTGCTTCTCAATCTACTCATCCAAGGGCTTCTGGGAGGGGTGGACC AATCCCAGTTCAGATGAATTATCATCCTGCTGCCTCACATAATCAAGTAAATAAAATAACTCCAAGTCCAACACAATACC ATGCCATTCAGAAAACTTCTGCTCCAGGGCGAACTTCAATGCAAGCCCCTGCTCCACAGTTGGGTCATCGGCCTGGGAGC TCATCTCCCCCTAAAGAATCTGTGGCAAATGGTTCAGATGCTGGAGAAATTGATGTAGCTTCAGAATCAGGTAAATCCAT GGGCACATTGGTTGGAAATGAAAGAGCAGTTTCCCAAGGTAATGGAAGAGGTTCTTTCATTTATGGTGGAGCTATGGGCA CTCCTGGAAATATGGGTGGTGGTCGTGGGGATCAGAACTTCCCAACCTTCTTGCCAGTTATGCAATTTGGAGGGCAGCAT CCTGGTGGTATGGGAGTTCCTGCTGTTGGCATGGCATTCCCTGGATATGTTGCTAATCCTCAACTTGGTATGGGAAGCTC TGAAATGACATGGCTACCAGTTTTGGCTGGTGCTGCAGGAGCTCTAGGAGCTACTTATGGCTCACCCTATCTCACTGTTG CTGGTGCTTATCCTGGTCGGCAATCAGGACAGACATCTTCAGCGGCTACTACAAGCAAGGAAAATAATGTGAGTAAAGCT AATAATGAATGGGAGCCACCTCAGAGACCTGAGCCTGTAAATGATGAGTTTGGTCAGCGGCAAAATAAGCCCCGCAGATA CTCAGAGATGAACTTTGGGCAATGA
Protein sequence (LotjaGi3g1v0015400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSSAGEEDVEYESDPEELKRSLSMRRRREASDDEEGEDGGGEEEGKGADRRSIRSDESEDEGGVADYDDEEEGLLEEE VEVEEEEVVEVKVGEDEEEVYEERGVEEGVVNGSVVVVKDSDADFKPNLEESGDMEEGDGEEEKKETEPFSVPTAGAFYM HDDRFRDNAGGRGQRRMRGGRRLWESKDERKWGHDKFEEITFQDRPYKEGRRPSRGNFRGRGKTRGVARGGYVRGDRKSY DDRDNQNQVPKGVVRGRGPRRYEPTYKNNDAAPQMQNRQSGKPVYKASNVSSGRAFTPISNSESDPVPAKKPVLASNLNY ASPPFYPSGSANKDTSLTPKRDVQTGSTSRNVHTGVMGEGFVAQQNNALHRGKNIVDSISMDKLHIDGSFRPSVGKPLNN LHMHPPGSSEVRASQSTHPRASGRGGPIPVQMNYHPAASHNQVNKITPSPTQYHAIQKTSAPGRTSMQAPAPQLGHRPGS SSPPKESVANGSDAGEIDVASESGKSMGTLVGNERAVSQGNGRGSFIYGGAMGTPGNMGGGRGDQNFPTFLPVMQFGGQH PGGMGVPAVGMAFPGYVANPQLGMGSSEMTWLPVLAGAAGALGATYGSPYLTVAGAYPGRQSGQTSSAATTSKENNVSKA NNEWEPPQRPEPVNDEFGQRQNKPRRYSEMNFGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 289 | 289 | - | – | |
| PANTHER | 6 | 674 | 669 | 1.2E-271 | – | |
| PANTHER | 6 | 674 | 669 | 1.2E-271 | – | |
| MobiDBLite | 16 | 36 | 21 | - | – | |
| MobiDBLite | 45 | 62 | 18 | - | – | |
| MobiDBLite | 63 | 104 | 42 | - | – | |
| Coils | 66 | 86 | 21 | - | – | |
| SMART | 111 | 224 | 114 | 1.8E-14 | ||
| Pfam | 128 | 223 | 96 | 6.7E-18 | ||
| MobiDBLite | 160 | 216 | 57 | - | – | |
| MobiDBLite | 230 | 245 | 16 | - | – | |
| MobiDBLite | 269 | 289 | 21 | - | – | |
| MobiDBLite | 325 | 353 | 29 | - | – | |
| MobiDBLite | 390 | 434 | 45 | - | – | |
| MobiDBLite | 459 | 508 | 50 | - | – | |
| MobiDBLite | 619 | 643 | 25 | - | – | |
| MobiDBLite | 619 | 674 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0015400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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