Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR018545

Source: InterPro

Description

IPR018545 is a Btz domain.

<p>This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein, also known as MLN51) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of mRNA in metazoa. The complex is formed by the association of four proteins (eIF4AIII, Barentsz, Mago, and Y14), mRNA, and ATP. This domain wraps around eIF4AIII and stacks against the 5' nucleotide [[cite:PUB00041837], [cite:PUB00044176]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0244589.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains CYTOPLASMIC_DOMAIN IPR018545 NON_CYTOPLASMIC_DOMAIN PF09405 PTHR22814 PTHR22814:SF97 SM01044 TRANSMEMBRANE mobidb-lite	9
Lj3g3v0139580.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: stress response protein nst1-like isoform X1 [Cicer arietinum] gi\|502147650\|ref\|XP_004506863.1\|	Domains Coil IPR018545 PF09405 PTHR22814 PTHR22814:SF97 SM01044 mobidb-lite	7
LotjaGi3g1v0015400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CASC3/barentsz eIF4AIII-binding protein; TAIR: AT1G80000.1 CASC3/Barentsz eIF4AIII binding protein; Swiss-Prot: sp\|Q12019\|MDN1_YEAST Midasin; TrEMBL-Plants: tr\|A0A0B2NU55\|A0A0B2NU55_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0015400	Domains Coil IPR018545 PF09405 PTHR46837 PTHR46837:SF5 SM01044 mobidb-lite	7
LotjaGi3g1v0015400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CASC3/barentsz eIF4AIII-binding protein; TAIR: AT1G80000.1 CASC3/Barentsz eIF4AIII binding protein; Swiss-Prot: sp\|Q12019\|MDN1_YEAST Midasin; TrEMBL-Plants: tr\|I1MCM2\|I1MCM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0015400	Domains Coil IPR018545 PF09405 PTHR46837 PTHR46837:SF5 SM01044 mobidb-lite	7
LotjaGi3g1v0361900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CASC3/barentsz eIF4AIII-binding protein; TAIR: AT1G80000.1 CASC3/Barentsz eIF4AIII binding protein; Swiss-Prot: sp\|A5D7H5\|CASC3_BOVIN Protein CASC3; TrEMBL-Plants: tr\|A0A072UG99\|A0A072UG99_MEDTR CASC3/barentsz eIF4AIII-binding protein; Found in the gene: LotjaGi3g1v0361900	Domains Coil IPR018545 PF09405 PTHR46837 PTHR46837:SF5 SM01044 mobidb-lite	7

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00