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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0020800 |
Transcript ID | LotjaGi3g1v0020800.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Avr9/Cf-9 rapidly elicited protein; TAIR: AT3G16330.1 Avr9/Cf-9 rapidly elicited protein; Swiss-Prot: sp|P0CP93|CWC27_CRYNB Peptidyl-prolyl isomerase CWC27; TrEMBL-Plants: tr|I1MCU2|I1MCU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0020800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2144270..2146293) extracted from Lotus japonicus Gifu genome v1.2.
CTAGTAAACATAAAACACAAATATGTTGAACATCTAAAGTATGGAATTGGCCCTTCAATGTGCGGCTAGCTTGAGGTTGG TTTCAACCTAACCACACTCTTTACTTTTTTTTTACAGGCAACCACACTCTTTACTTACTTTACTTCCTCTCCTCTCCATT CCTAAAGTAGAGCCTCCCCCAATAATGCTCTCATTAAAATAATAGTAAAACAAAGCAACTCATTACCTCCACAATTTTCT TCTTCTCTTCTTTTCACCCATCTCCTGCTACCACTATATATACACCCCCATCACACCATCCCTCTTGCCATTCAAACCAT TTCCTCTTCTCTCTCAATTCAAAATATCTCTCTCTCTCTCTCAAATCATTCAAACAAAAACATCTTTCTTATTTCTAAAA GAAAACTAAAGAAAAACAAGAAGTAGAAATGGAAATGGAAAGTAATGCACCAGCAGTAGCTAAAAGAGTGTGGAGTATGG TACGTGTGGTTTACTTCATGTTGAGAAAAGGCATCTTAAAAGGCAAGCTCATGATGGATCTCAAAAATATCATGCTCAGA CGCCGCGGCAAGCTCGCCGGCAAAGCCATTGCCAACCTCATGTTCCACCACAACCACGGCGGCGCCACCACCACCTCACA CCCTCAATTCTCTGCCTCCAGGGAGTATGAGTTCAGCTGCAGCAACACCCCCAACTACAACTTCTTCTCCACCGGGAAGC GCAACCGCCACAGCAACCATCACAACAACCACTTCTTCACCAGCGCTCACGTGCCGCCCAGGCAGGATGACGAGGCGGTG ACTGCAAACGCCGTGAAGGCGGTGCTGGAGATGCTGAACAGTGATACAGAGGTGTTCTATTCCCCTGCTCTTCCCGGGAA GGTGAGGCAGTTGAGGGTGACAGACTCGCCGTTTCCGCTGCGAGAGGCGGAGGATGAAAAGGACAACCAGGTGGACAAGG CGGCGGAAGAGTTCATAAAGAGGTTTTATAAGGATTTGAGGAAGCAAGATTGAATTGATTTGAATTTTGGATTGAATAGA ACCTACTACCATCAACTATGTAAATCATTAATAGCGCAGATTTTTTCCCCTTTCTGCCATAATGTTTCACCTATATAATT GAATATTGATATGAGTTCATGCCGTGGTAAATGACTTTTTAAAATATCACCAAAGTACATAAGTGTGTGTTTGGATGCAA AGGCTCTCAAAGGGACCTAGTCTGGCTGACTCGAGCTGGCTTGCTCACCACATGCTATAAGAAAAGAAAGGTGCTTGGTA TGATACCACAATACTTAGTTGGGGTATGATTCATAAGATGATGTGTACCAATTAAATAAATCCATAGTGTAATTAATTAA GCACTTTTTCTTTTTGTTTTTCTGTTATTATTAATTTTATCATTTACAAAGTAGTCCTCACTTAATGTATTAATTGAGAA TAAATCTCCTCCTCTTCCTTCCCCAAAACACTGAATTCCGTCAGTGGCGCAGGAGGTTCAGGTCAAATCTGCAAAGGCTA TGAGCGGAGGAGGAGGCGTCGCCGCCCTCAGTAGTAGTCACAGCGATGTCGGTATTGGCGGCGTTGACGCTGCTGTGGTT ATTGTTGCTGCTCTTGTCATTTCGTAGTGGCACCGCTTGCGACCGTCAAGGGTCTGGCCAGTAGGGAAGCTCTTGTGACA GATTGAACACTTGTGCATCTTCCCGCTGTTGCTGATGACCGTGACAGTGGAGGTCGAGACGTTGTCGTTGACGGCGGTGG CGGGATGAGTTTCCGATGAGGATTTGCAGTGGCTGGCTTTGTGGCCGTCGAGTGCTTGGTAAGGTGGGAAGGCTTTGTTG CACACGCTGCACTTGTGAGTGAGTTTCAGCGGTTGTGATTGTGGTTTGGCTGTGATTATGACTGTGAATTGGATGATGAT TCTGCACACAAGGTGTTTGTGTTATTGTCTCGGTTGTTTTATGTTTTAGTTAAAGGACTTCTTCCTTCTGGTTTTCTTTG TTGAACCTTTTGTTAAGATTTCTT
CDS sequence (LotjaGi3g1v0020800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGGAAAGTAATGCACCAGCAGTAGCTAAAAGAGTGTGGAGTATGGTACGTGTGGTTTACTTCATGTTGAGAAA AGGCATCTTAAAAGGCAAGCTCATGATGGATCTCAAAAATATCATGCTCAGACGCCGCGGCAAGCTCGCCGGCAAAGCCA TTGCCAACCTCATGTTCCACCACAACCACGGCGGCGCCACCACCACCTCACACCCTCAATTCTCTGCCTCCAGGGAGTAT GAGTTCAGCTGCAGCAACACCCCCAACTACAACTTCTTCTCCACCGGGAAGCGCAACCGCCACAGCAACCATCACAACAA CCACTTCTTCACCAGCGCTCACGTGCCGCCCAGGCAGGATGACGAGGCGGTGACTGCAAACGCCGTGAAGGCGGTGCTGG AGATGCTGAACAGTGATACAGAGGTGTTCTATTCCCCTGCTCTTCCCGGGAAGGTGAGGCAGTTGAGGGTGACAGACTCG CCGTTTCCGCTGCGAGAGGCGGAGGATGAAAAGGACAACCAGGTGGACAAGGCGGCGGAAGAGTTCATAAAGAGGTTTTA TAAGGATTTGAGGAAGCAAGATTGA
Protein sequence (LotjaGi3g1v0020800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMESNAPAVAKRVWSMVRVVYFMLRKGILKGKLMMDLKNIMLRRRGKLAGKAIANLMFHHNHGGATTTSHPQFSASREY EFSCSNTPNYNFFSTGKRNRHSNHHNNHFFTSAHVPPRQDDEAVTANAVKAVLEMLNSDTEVFYSPALPGKVRQLRVTDS PFPLREAEDEKDNQVDKAAEEFIKRFYKDLRKQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 193 | 188 | 1.2E-71 | – | |
PANTHER | 6 | 193 | 188 | 1.2E-71 | – | |
Pfam | 172 | 193 | 22 | 2.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0020800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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