Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0020800 |
Transcript ID | LotjaGi3g1v0020800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Avr9/Cf-9 rapidly elicited protein; TAIR: AT3G16330.1 Avr9/Cf-9 rapidly elicited protein; Swiss-Prot: sp|P0CP93|CWC27_CRYNB Peptidyl-prolyl isomerase CWC27; TrEMBL-Plants: tr|I1MCU2|I1MCU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0020800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2144344..2146290) extracted from Lotus japonicus Gifu genome v1.2.
GTAAACATAAAACACAAATATGTTGAACATCTAAAGTATGGAATTGGCCCTTCAATGTGCGGCTAGCTTGAGGTTGGTTT CAACCTAACCACACTCTTTACTTTTTTTTTACAGGCAACCACACTCTTTACTTACTTTACTTCCTCTCCTCTCCATTCCT AAAGTAGAGCCTCCCCCAATAATGCTCTCATTAAAATAATAGTAAAACAAAGCAACTCATTACCTCCACAATTTTCTTCT TCTCTTCTTTTCACCCATCTCCTGCTACCACTATATATACACCCCCATCACACCATCCCTCTTGCCATTCAAACCATTTC CTCTTCTCTCTCAATTCAAAATATCTCTCTCTCTCTCTCAAATCATTCAAACAAAAACATCTTTCTTATTTCTAAAAGAA AACTAAAGAAAAACAAGAAGTAGAAATGGAAATGGAAAGTAATGCACCAGCAGTAGCTAAAAGAGTGTGGAGTATGGTAC GTGTGGTTTACTTCATGTTGAGAAAAGGCATCTTAAAAGGCAAGCTCATGATGGATCTCAAAAATATCATGCTCAGACGC CGCGGCAAGCTCGCCGGCAAAGCCATTGCCAACCTCATGTTCCACCACAACCACGGCGGCGCCACCACCACCTCACACCC TCAATTCTCTGCCTCCAGGGAGTATGAGTTCAGCTGCAGCAACACCCCCAACTACAACTTCTTCTCCACCGGGAAGCGCA ACCGCCACAGCAACCATCACAACAACCACTTCTTCACCAGCGCTCACGTGCCGCCCAGGCAGGATGACGAGGCGGTGACT GCAAACGCCGTGAAGGCGGTGCTGGAGATGCTGAACAGTGATACAGAGGTGTTCTATTCCCCTGCTCTTCCCGGGAAGGT GAGGCAGTTGAGGGTGACAGACTCGCCGTTTCCGCTGCGAGAGGCGGAGGATGAAAAGGACAACCAGGTGGACAAGGCGG CGGAAGAGTTCATAAAGAGGTTTTATAAGGATTTGAGGAAGCAAGATTGAATTGATTTGAATTTTGGATTGAATAGAACC TACTACCATCAACTATGTAAATCATTAATAGCGCAGATTTTTTCCCCTTTCTGCCATAATGTTTCACCTATATAATTGAA TATTGATATGAGTTCATGCCGTGGTAAATGACTTTTTAAAATATCACCAAAGTACATAAGTGTGTGTTTGGATGCAAAGG CTCTCAAAGGGACCTAGTCTGGCTGACTCGAGCTGGCTTGCTCACCACATGCTATAAGAAAAGAAAGGTGCTTGGTATGA TACCACAATACTTAGTTGGGGTATGATTCATAAGATGATGTGTACCAATTAAATAAATCCATAGTGTAATTAATTAAGCA CTTTTTCTTTTTGTTTTTCTGTTATTATTAATTTTATCATTTACAAAGTAGTCCTCACTTAATGTATTAATTGAGAATAA ATCTCCTCCTCTTCCTTCCCCAAAACACTGAATTCCGTCAGTGGCGCAGGAGGTTCAGGTCAAATCTGCAAAGGCTATGA GCGGAGGAGGAGGCGTCGCCGCCCTCAGTAGTAGTCACAGCGATGTCGGTATTGGCGGCGTTGACGCTGCTGTGGTTATT GTTGCTGCTCTTGTCATTTCGTAGTGGCACCGCTTGCGACCGTCAAGGGTCTGGCCAGTAGGGAAGCTCTTGTGACAGAT TGAACACTTGTGCATCTTCCCGCTGTTGCTGATGACCGTGACAGTGGAGGTCGAGACGTTGTCGTTGACGGCGGTGGCGG GATGAGTTTCCGATGAGGATTTGCAGTGGCTGGCTTTGTGGCCGTCGAGTGCTTGGTAAGGTGGGAAGGCTTTGTTGCAC ACGCTGCACTTGTGAGTGAGTTTCAGCGGTTGTGATTGTGGTTTGGCTGTGATTATGACTGTGAATTGGATGATGATTCT GCACACAAGGTGTTTGTGTTATTGTCT
CDS sequence (LotjaGi3g1v0020800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGGAAAGTAATGCACCAGCAGTAGCTAAAAGAGTGTGGAGTATGGTACGTGTGGTTTACTTCATGTTGAGAAA AGGCATCTTAAAAGGCAAGCTCATGATGGATCTCAAAAATATCATGCTCAGACGCCGCGGCAAGCTCGCCGGCAAAGCCA TTGCCAACCTCATGTTCCACCACAACCACGGCGGCGCCACCACCACCTCACACCCTCAATTCTCTGCCTCCAGGGAGTAT GAGTTCAGCTGCAGCAACACCCCCAACTACAACTTCTTCTCCACCGGGAAGCGCAACCGCCACAGCAACCATCACAACAA CCACTTCTTCACCAGCGCTCACGTGCCGCCCAGGCAGGATGACGAGGCGGTGACTGCAAACGCCGTGAAGGCGGTGCTGG AGATGCTGAACAGTGATACAGAGGTGTTCTATTCCCCTGCTCTTCCCGGGAAGGTGAGGCAGTTGAGGGTGACAGACTCG CCGTTTCCGCTGCGAGAGGCGGAGGATGAAAAGGACAACCAGGTGGACAAGGCGGCGGAAGAGTTCATAAAGAGGTTTTA TAAGGATTTGAGGAAGCAAGATTGA
Protein sequence (LotjaGi3g1v0020800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMESNAPAVAKRVWSMVRVVYFMLRKGILKGKLMMDLKNIMLRRRGKLAGKAIANLMFHHNHGGATTTSHPQFSASREY EFSCSNTPNYNFFSTGKRNRHSNHHNNHFFTSAHVPPRQDDEAVTANAVKAVLEMLNSDTEVFYSPALPGKVRQLRVTDS PFPLREAEDEKDNQVDKAAEEFIKRFYKDLRKQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 193 | 188 | 1.2E-71 | – | |
PANTHER | 6 | 193 | 188 | 1.2E-71 | – | |
Pfam | 172 | 193 | 22 | 2.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0020800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…