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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0043000 |
| Transcript ID | LotjaGi3g1v0043000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G73140.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q1PFD9|TBL31_ARATH Protein trichome birefringence-like 31; TrEMBL-Plants: tr|A0A1J7H0G0|A0A1J7H0G0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4571553..4575619) extracted from Lotus japonicus Gifu genome v1.2.
CAAGCAACCCACAAAATGAAGCACTTGACAATGTCCCTAACATAATTTACAACACTAGCAGTTTTCAATTCCTTCAACAA AGCCATGTCAATGCTTTCTTTCAAGCCTTTCCTTGATCGTCGGGTCCAATCGTTCTTCCCAATTGTATTGTATTCAACTC TGATCTTAGGAGCTGCAAGGTTAGTCCTAGATAGTTTGAAGAGCAGCAATAGCCCTGTTTTCAAGCTCTATGGCATGTCA CATGGTGGAAGGAATAGATTACCAGTTGTAGTGTTGCCAGAGGATCGCATTGAGGAAGATTGCAATGTGTTTGAAGGGAC ATGGGTGTGGGACAATGTGTCCTATCCTCTTTATGAAGAAGAGAGTTGCCCTTACTTGGTCAAGCAGACTACTTGTAAGA AGAATGGAAGGCCTGATTCTTACTATAGGAATTGGAGGTGGCAGCCTCATGGATGCAACCTTCCAAGGTAACTAACTAAC CCTTTTTTACTAGTCTTTTTGGTTTGAGAAAGGTGTTCTGTTTTGATTCAGTTTCACTTTTCATTAGCAAAACGTATATT TTCTTTTACTTTGTTGCCTATTTTCAAAAGTGATATAAGATTAACAAGATAGTTTAAGCACTTTAAAGTGTGTGTTTGTA TTTATGTTCAAGTTGGTCAAAAACACGTTCACTTCTATTACACAAGAAGCATGGATTAGCCAAAAGCATATTCAAACTGT CTTTGAATGTGCGTCGACAGAAATATAATGTCTTTGGAAACCCCTTAGATTTCCACAATGGGGAGAGAGGTGACTCTAGG CTGGAAGCTGAGTTCTAAATTGCAGTTAAAGGTGGGTTAATGAGCCACAATTGCAGTTTGGCGGCACAATTGCAGTTGCA AACTATAATTTAAAATCTTGATTCCGGGAGAATCTAATCAAAACTATTTTGGGAATTGATTTTAATGTCACTCCTATAAA TATTCATGTCATCCTCTTCCGCGCTTTTAAAGTGTGAAATGTATAAGTTGTATATCGCACTTTTAAGTGCGGTGTGTAAT TGATTCCCGCACTTATAAGTGTGCGGTAAAATTGGGTGGCAAGAAAACAAATAGGCTGTGACATCAAAATCAATTCCCAA TCACTTTTGTGGGAAAAATAAATAATTTAAAAGGTTTACCTGAAACAAAACATGCAATTCATATTATCTTCTCTTATAGT GCTATAAGAAGCATGAAGATGGAGGCATGGAGCCATTGCATGTATCTAGAGTAACAAGCAATGACTCCTCACAAACTAAT ATATTTCCTTGATTAAGACATGGATTTCAAACTTTGAGCATCACAAGATTGTTCTTTGCTTCAGATTTGACCCTTTGAAG TTGCTGCACGTGTTGAGGAACAAACGGATGATGTTCATTGGAGACTCATTACAAAGAGGCCAATTTGAGTCTATGGTCTG TTTGGTACAATCTGTAATTCCTGAAGGAAAGAAATCCCTCAAAAGAATTCCACCTATGAAAATCTTCAAAGCTGAGGTTT ATCAACTAGTGTCTTTCAACTTCCTAAATACCAAGCTTATATACACAACTTTTATTACATCTTACATTGCTTCTAAAAAT TTGTAAATATGTTTTTGGTCGCTGTATTTTCAATAATACAGGGATGAAAACAAATATACATTTAAGCATTTGTTTAATGA TGAAACTGTTATGAAACCCAAATTTCTGATATTTTCTGTAGTTTTTTTCTTATTCCAGGAGTTCAATGCATCAATTGAAT ACTACTGGGCTCCATTCATCGTAGAATCCATTTCAGATCATGCAACAAATCATACAGTACATAAACGAATGGTGAGCCTG GACTCCATTGCTAACCATGGAAAACATTGGCAAGGAGTGGACATTTTGGTGTTCGAAAGTTATGTTTGGTGGATGCACAA GCCTTTCATCAATGCTACGTGTGTATCTAAACTCTTCTATAGTTGAATGTTCATAAATAGCACATTAGCACTAGTTTTAT TAAATTATTTATTCCTTTTCATTGAATTGGTCTTAAACATCTTTTGTTCCAGATATGGATCGCCACACCATGTCAAAGAA TATAATGTCACCACAGCATACAGATTGGCTTTGGATACATGGGCAAATTGGTTAGAATCAAACATCAAACCACTTACTCA GAAGGTCTTTTTCATGAGTATGTCTCCAACACATCTGTGGTAAGTGATCACAATCACAATCTTTTTTCTGCCAAAATTTG CTCAGGTTAATGCATCTTTAGAACCACTGCAAAGTGGAGCTTAACACACTTCACTTTTTTCATAGTAAGATGTTGGGCAA AATCATGAAAGAAGACTTGTAACTACACAACTTTTTAAGACTAGTTATTTTGAAACCGAGAATTGAACAAAAAATAGTTG AGCAAATATGGCTAAGTCCTTATTTGAATACTGTTTTTTAAAATCAGGAGAAGAAAAAATTCATTTTTGTATGAACAATT TTCAAAAACTGTTTCTAAAATCAGTTCTTATTTTCAGTTTTAAAGGTCTTTCAGCTTTGAAAAACATGTCAATTAAATTT TATTTTATTATTCTTTTTTTTTCTAAAGCAGAAGATTTATTGAAATAGATCAAAGTCGAGATATAGGACCTCCCAACAAA GAACTCACAAAACAAGAAAGCGATGAAAAAAAAGTGAAGAATGCCGAAAACATAAGAGAAAATGCTACAAAATAAGCCAT GATACGACCAAAAACCTACTAAAAGGACATCGCCCAAGACTAGGAAAACGAAAACAGCACACACCCTCGATCAACAAAAT CAAAAGAGCCTTAACCATCTCCATATCTCTCCGGCTGAGAAGATTTAAGCTTCAAATGTTTTTGAAAACAGTTTTAAAAT TCAAAAAACTCTTAAGGGAATCAAACAAGTTCTAACTCTTTCCAGCTCATTTTTTCCTTAAATTGTGTTTGGACCGTTCT AAAAAATTACAGCTGATTTTGTTGTTCAGGAGCTGGGAATGGAAGCCAGGAAGTGATGAAAATTGCTTCAATGAGTCATA CCCTATTCAAGGTCCATATTGGGGCACAGGCTCAAATCTTGAGATAATGAAGATACTAAATGATGTGCTACAAGAACTGA AAATAGATGTCACCTTGCTGAACATAACCCAACTATCAGAGTACAGACAAGATGCTCACACATCAGTTTATGGGGAGAGA AAAGGCAAGCTCTTGACAAAAGAACAGAGAGCCAATCCAAAGTCCTTTGCTGATTGCATTCATTGGTGCTTACCTGGAGT CCCTGATGCATGGAATGAAATCCTATATGCATATCTTTTTAAGAATTATAAAAACCTCTCTTGACATGACAGAAAGCACA AGCATCTCTCAGATGGTGGGCACATTCACAATTTTTCATCAGTTCAATCCATTCTATTTTAGTATTTACAAAATTCAGCA CTTTTTGAAACTCTGACAAATAGATTAACCAAGAGTCTAGTTGGAGTCCGACCAAAGAGCATTTATTGAAGTTTATCTAG TAGGAAAAGCACAACATAAACTCCAATAAGTGCTCATTGGTCAGCATACAATCATTGATCTGCATACAAACGGGTTCTAA CTTGTAAGAAATACTATTTGTATCAACATGAAGTAATACTAATTGTATACTGAGGAAAACTTTGCAAGTATGCAGCTTGA GAAAGAAATCAGAAAATCGTCACATTTTCATGAAAACAAGCGTCATCAACAATTATGTGCGTTCTTCGTAGAAATATAAA CAATACAATTTTCAGCAAGAATTTCCATGCCACCTTCAAAATGTACATTTGCAAAATAAGGGAGCCAATGAAATTGGTCA ATCATTATATATATGCAGCCAAATTGTATTTACAGCAGCTCCCACTCAGTTTCAGAAGCTTGCTGCTCTTGCAACATCTT TGAGTCAAAATGCATAGATCTAAATGGGAAGAGAGTTCGCGATGAACCTTGACTGTGCTCTGTATCAGTGTCTCCATACC ATATTGCTATTTGTTCATACTCCTTCGCTAACCTCCTCTTTGGAGCAAATGCATCCTGAATTCTTTT
CDS sequence (LotjaGi3g1v0043000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCCAAATTTCTGATATTTTCTGTAGTTTTTTTCTTATTCCAGGAGTTCAATGCATCAATTGAATACTACTGGGC TCCATTCATCGTAGAATCCATTTCAGATCATGCAACAAATCATACAGTACATAAACGAATGGTGAGCCTGGACTCCATTG CTAACCATGGAAAACATTGGCAAGGAGTGGACATTTTGGTGTTCGAAAGTTATGTTTGGTGGATGCACAAGCCTTTCATC AATGCTACATATGGATCGCCACACCATGTCAAAGAATATAATGTCACCACAGCATACAGATTGGCTTTGGATACATGGGC AAATTGGTTAGAATCAAACATCAAACCACTTACTCAGAAGGTCTTTTTCATGAGTATGTCTCCAACACATCTGTGGAGCT GGGAATGGAAGCCAGGAAGTGATGAAAATTGCTTCAATGAGTCATACCCTATTCAAGGTCCATATTGGGGCACAGGCTCA AATCTTGAGATAATGAAGATACTAAATGATGTGCTACAAGAACTGAAAATAGATGTCACCTTGCTGAACATAACCCAACT ATCAGAGTACAGACAAGATGCTCACACATCAGTTTATGGGGAGAGAAAAGGCAAGCTCTTGACAAAAGAACAGAGAGCCA ATCCAAAGTCCTTTGCTGATTGCATTCATTGGTGCTTACCTGGAGTCCCTGATGCATGGAATGAAATCCTATATGCATAT CTTTTTAAGAATTATAAAAACCTCTCTTGA
Protein sequence (LotjaGi3g1v0043000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPKFLIFSVVFFLFQEFNASIEYYWAPFIVESISDHATNHTVHKRMVSLDSIANHGKHWQGVDILVFESYVWWMHKPFI NATYGSPHHVKEYNVTTAYRLALDTWANWLESNIKPLTQKVFFMSMSPTHLWSWEWKPGSDENCFNESYPIQGPYWGTGS NLEIMKILNDVLQELKIDVTLLNITQLSEYRQDAHTSVYGERKGKLLTKEQRANPKSFADCIHWCLPGVPDAWNEILYAY LFKNYKNLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| Pfam | 12 | 239 | 228 | 3.0E-65 | ||
| PANTHER | 13 | 248 | 236 | 2.5E-139 | – | |
| PANTHER | 13 | 248 | 236 | 2.5E-139 | ||
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 249 | 229 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0043000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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