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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0049600 |
| Transcript ID | LotjaGi3g1v0049600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stem-specific protein TSJT1; TAIR: AT4G27450.1 aluminum induced protein with YGL and LRDR motifs; Swiss-Prot: sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1; TrEMBL-Plants: tr|I3STI1|I3STI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0049600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5184643..5186848) extracted from Lotus japonicus Gifu genome v1.2.
AAATGGCAAATAAGGGGTCCAATTTTGGTAGGAGAATCAGATCAGATGAGATGGTAATGACCCATGTGGGACAAGAAAGA AAACAATGCATCTCTGAGAAAGAAACAAAAGTAACAAAAGATAAGAATAACTTGAAAGTCGTGAATCTTATCCATGATAC TTAAGATCCACGCCCACAATTTGATTAAATGAATCAGCAACCTAGACCACCCTCAACTACTTTGTCCTCTTTCCATGTTA GGTAGCCCATGTCATCACATAAATACTACACTCACCCTCCATGAATGACACTCCATCCTACAGATATATTTCATTCTTTC TATTCTCTTATTCACCATTTTGTTCTGAGATTCAAAATGTTGGCCATTTTTCACAAGGCTTTTGCTCATCCACCTGATGA GCTAAACAGTCCTGCATCCTACAAGGGTGCCAAGAAGCCTAAGGTTCCTGAGGAAACTCTAAGAGAGTTTCTATCCCATC ATCCTGATAACACTTTTTCAATGAGTTTTGGTGAGGCTGCTGTTCTTGCTTATGTTCGCCCTGAGCGACATTTCTCCTTT CGTCCAAGGTGATTTTCATGTTTAGAAATCTTTCTACAATTAATTCTAAAAAAAAAAATTAATTCTGGAGAGAAGCTTAT TCGAACAGCTTCTAAGTATGCTGAGATTGTTGACTATGAAGAAAAATAACATGCTATAATTATATAGTTACTTGTTCATT TCTTATATGAAAAATTGTGAAGGAAGTTAACAAAGTTGTTGTGTTCTTTTGGTTTTTCAGGCTGTTTTGTGCAATTGATG ACATTTATTGTCTCTTTCTGGGGACCTTGAACAACCTGTGTTCACTCAATAAGCAATATGGTTTGACAAAGGGTACTGAT GAAGCCATGTTTGTGATTGAAGCTTATAAGACGCTTCGCGACCGCGGTCCTTACCCTGCAGATCAAGTTGTCAAGGGTCT TGATGGAAGCTTTGCCTTTGTTGTCTATGACAGCAAGGTTGGCACTGTCTTTGCAGCTCTGGTAAGATAATTAAGTGCAT GTTTCGAAATCCTTCTAACTAAATGTAGCTTCTGTGTTTCAAAATTGATTAAAGAACGAGAAGTTGATTTACTAGATATC AATCATGTTCATTTTGACATTGTCCAACATCTAGCATTCTTATATCAACACAATCAATGTGTGATTTTTTTCCCACATAT TGTTTAGTTTTCAAGTGGCTCTATTTCAATGTAAAAATTGGTTTCAGGGTTCTGATGGTGGAGTGAAGCTATATTGGGGT ATTGCAGCTGATGGATCTGTGGTAATCTCTGATGATTTAGATGTTATAAAAGAGGGTTGTGCCAAATCCTTTGCTCCCTT TCCAACAGGTACCATTTGAACCACTATTAATTAGTCTTGTTAATTCATGGCACATCAGCTCATAGGTTACGATGAATTTA AAATGAGCTTTATAATAACATTATGGACTGCATATTTGAAAATCCTTTAATAATTGATTTTAAACTCAATCAATTCTGGT GAGTAACTTCTATTAATAGCTAGTTTCAGTTGAGACATATGTTTCATTGGGCAGATAGAAAAGGAACTATATGATTTCAA TCTTTAATAGTATAGATCTATGCTAAGATCCATGACAAGTTTGGTGTTGCAATGCAGGGTGTATGTTTCACAGTGAAGGA GGTTTGATGAGCTTTGAGCATCCAATGAACAAGTTGAAGGCAATGCCAAGGGTAGATAGTGAAGGGGTCATGTGTGGAGC TAACTTCAAGGTTGATAAGTATACAAGGGTCAATAGCATACCTCGAGTGGGAAGTCAAGCCAATTGGATGGAATGGGAAC AGCATTAGTTTCAAAATGAGACATGTATAAACGTTTAACTGTTTAAGTGATGATGTATGTCAGTATGTGTAATAATGCAA ATAAATGCCATGCCACTTATGTTCCTTTCTTAAATTTGTCTTAACTCTCCTTTTCCAATACAAACTGATTTACAATTTTA CATAAAGAAAAGCTCGAACTATGAATTGTAGGGCTTTACTCCAAAGGGAGCCCTTCCAGAAATTCTCAAAGGCCAGGGCA GGACCCAGGCCTAAGAGGGGGTTTAGAAATAGTTTTCAACTAGCAATAGACGTGCCTAGAACCTCACTAGCTGCGTGCCG CGCAAAGATCCTGTAAGAGGTTTATTACTTCTTATTTATATCAAAA
CDS sequence (LotjaGi3g1v0049600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACTCCATCCTACAGATATATTTCATTCTTTCTATTCTCTTATTCACCATTTTGTTCTGAGATTCAAAATGTTGGC CATTTTTCACAAGGCTTTTGCTCATCCACCTGATGAGCTAAACAGTCCTGCATCCTACAAGGGTGCCAAGAAGCCTAAGG TTCCTGAGGAAACTCTAAGAGAGTTTCTATCCCATCATCCTGATAACACTTTTTCAATGAGTTTTGGTGAGGCTGCTGTT CTTGCTTATGTTCGCCCTGAGCGACATTTCTCCTTTCGTCCAAGGCTGTTTTGTGCAATTGATGACATTTATTGTCTCTT TCTGGGGACCTTGAACAACCTGTGTTCACTCAATAAGCAATATGGTTTGACAAAGGGTACTGATGAAGCCATGTTTGTGA TTGAAGCTTATAAGACGCTTCGCGACCGCGGTCCTTACCCTGCAGATCAAGTTGTCAAGGGTCTTGATGGAAGCTTTGCC TTTGTTGTCTATGACAGCAAGGTTGGCACTGTCTTTGCAGCTCTGGGTTCTGATGGTGGAGTGAAGCTATATTGGGGTAT TGCAGCTGATGGATCTGTGGTAATCTCTGATGATTTAGATGTTATAAAAGAGGGTTGTGCCAAATCCTTTGCTCCCTTTC CAACAGGGTGTATGTTTCACAGTGAAGGAGGTTTGATGAGCTTTGAGCATCCAATGAACAAGTTGAAGGCAATGCCAAGG GTAGATAGTGAAGGGGTCATGTGTGGAGCTAACTTCAAGGTTGATAAGTATACAAGGGTCAATAGCATACCTCGAGTGGG AAGTCAAGCCAATTGGATGGAATGGGAACAGCATTAG
Protein sequence (LotjaGi3g1v0049600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLHPTDIFHSFYSLIHHFVLRFKMLAIFHKAFAHPPDELNSPASYKGAKKPKVPEETLREFLSHHPDNTFSMSFGEAAV LAYVRPERHFSFRPRLFCAIDDIYCLFLGTLNNLCSLNKQYGLTKGTDEAMFVIEAYKTLRDRGPYPADQVVKGLDGSFA FVVYDSKVGTVFAALGSDGGVKLYWGIAADGSVVISDDLDVIKEGCAKSFAPFPTGCMFHSEGGLMSFEHPMNKLKAMPR VDSEGVMCGANFKVDKYTRVNSIPRVGSQANWMEWEQH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 276 | 252 | 2.7E-135 | – | |
| PANTHER | 25 | 276 | 252 | 2.7E-135 | – | |
| CDD | 26 | 254 | 229 | 3.35645E-143 | – | |
| Pfam | 26 | 254 | 229 | 6.0E-112 | ||
| SMART | 26 | 254 | 229 | 1.7E-159 | ||
| Gene3D | 95 | 230 | 136 | 6.3E-8 | ||
| SUPERFAMILY | 100 | 222 | 123 | 2.89E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0049600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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