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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0077000 |
| Transcript ID | LotjaGi3g1v0077000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter G family member; TAIR: AT4G27420.1 ABC-2 type transporter family protein; Swiss-Prot: sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9; TrEMBL-Plants: tr|A0A072VBH9|A0A072VBH9_MEDTR White-brown-complex ABC transporter family protein; Found in the gene: LotjaGi3g1v0077000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8444930..8445829) extracted from Lotus japonicus Gifu genome v1.2.
CCTATAACTAGGCCGGAAAATCTCATGCCTCATACTTTAAAAGAAGATCATAACATATACTTAATCTAGAAGCATGTAAT TATAATACATTATCATTTTCTTAATTCAAAAGTATAATCAGTTCTCAGTATTAATGTGGATTATCAGAGAACTAAATTAC AAAAAGAATGACTAACCTATGATTTTGATTGTCTATAAGCTACTAATCACAATTCATTTATGTGTTACTTGTAGATTGGG CTCCTCTTCTTCGTATCAGGCTTCTGGGGTTTCTTCCCACTCTTCCAAGCAATTTTCACCTTCCCACAAGAGCTAGTAAT GATAGAGAAAGAACGCTCCTCAGGAATGTACAGGCTCTCCTCCTACTTCATGTCAAGAATGGTAGCTGACCTCCCCATGG AACTAATCCTTCCAACCATATTCCTCCTCATAACATATTTCATGGCAGGCCTAAAGCACAACTTCGCCAGCTTCCTCTGC ACCCTCCTAAGCCTCTTACTCAATGTCTTAGTTGCTCAAGGCCTAGGCCTCGCCATCGGGGCCGTCGTCCTCAATCAAAA ATCCGCGGCCACGCTCGCCTCCGTGATCATGCTTTGCTTCTTGCTGGCCGGCGGGTTCTACGTTCAGAATGTTCCCGGGT TTATAGCCTGGGTGAAGTACATTTCTATAAGCTACTACACGTACCAGTTGTTTATTGTGTCTCAGTATCATGCTGGGGAA ACATACCCTTGTTCTAGTGGTCAGTGTCAAGTGTCAGAGTTTCCTTCTATAAAGGAAATGGGGTTTAATTTTCACGGGCA AGCGCTAACTGCGGTGGCTCTTGTGGTGATGATGATTGGTTATAGAGTTATTGCTTATGTTGCTCTTATGAGGATTGGAG TGACTAAGAAATTGGCCTAG
CDS sequence (LotjaGi3g1v0077000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCATACTTTAAAAGAAGATCATAACATTGGGCTCCTCTTCTTCGTATCAGGCTTCTGGGGTTTCTTCCCACTCTT CCAAGCAATTTTCACCTTCCCACAAGAGCTAGTAATGATAGAGAAAGAACGCTCCTCAGGAATGTACAGGCTCTCCTCCT ACTTCATGTCAAGAATGGTAGCTGACCTCCCCATGGAACTAATCCTTCCAACCATATTCCTCCTCATAACATATTTCATG GCAGGCCTAAAGCACAACTTCGCCAGCTTCCTCTGCACCCTCCTAAGCCTCTTACTCAATGTCTTAGTTGCTCAAGGCCT AGGCCTCGCCATCGGGGCCGTCGTCCTCAATCAAAAATCCGCGGCCACGCTCGCCTCCGTGATCATGCTTTGCTTCTTGC TGGCCGGCGGGTTCTACGTTCAGAATGTTCCCGGGTTTATAGCCTGGGTGAAGTACATTTCTATAAGCTACTACACGTAC CAGTTGTTTATTGTGTCTCAGTATCATGCTGGGGAAACATACCCTTGTTCTAGTGGTCAGTGTCAAGTGTCAGAGTTTCC TTCTATAAAGGAAATGGGGTTTAATTTTCACGGGCAAGCGCTAACTGCGGTGGCTCTTGTGGTGATGATGATTGGTTATA GAGTTATTGCTTATGTTGCTCTTATGAGGATTGGAGTGACTAAGAAATTGGCCTAG
Protein sequence (LotjaGi3g1v0077000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPHTLKEDHNIGLLFFVSGFWGFFPLFQAIFTFPQELVMIEKERSSGMYRLSSYFMSRMVADLPMELILPTIFLLITYFM AGLKHNFASFLCTLLSLLLNVLVAQGLGLAIGAVVLNQKSAATLASVIMLCFLLAGGFYVQNVPGFIAWVKYISISYYTY QLFIVSQYHAGETYPCSSGQCQVSEFPSIKEMGFNFHGQALTAVALVVMMIGYRVIAYVALMRIGVTKKLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 9 | 225 | 217 | 3.3E-86 | – | |
| PANTHER | 9 | 225 | 217 | 3.3E-86 | – | |
| Pfam | 10 | 168 | 159 | 5.7E-31 | ||
| Phobius | 12 | 34 | 23 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 35 | 54 | 20 | - | – | |
| Phobius | 55 | 81 | 27 | - | – | |
| TMHMM | 59 | 81 | 23 | - | – | |
| Phobius | 82 | 86 | 5 | - | – | |
| Phobius | 87 | 114 | 28 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 115 | 120 | 6 | - | – | |
| Phobius | 121 | 140 | 20 | - | – | |
| TMHMM | 121 | 140 | 20 | - | – | |
| Phobius | 141 | 199 | 59 | - | – | |
| TMHMM | 145 | 164 | 20 | - | – | |
| TMHMM | 200 | 222 | 23 | - | – | |
| Phobius | 200 | 221 | 22 | - | – | |
| Phobius | 222 | 231 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0077000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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