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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0084100 |
| Transcript ID | LotjaGi3g1v0084100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GPI transamidase component PIG-T; TAIR: AT3G07140.1 GPI transamidase component Gpi16 subunit family protein; Swiss-Prot: sp|Q969N2|PIGT_HUMAN GPI transamidase component PIG-T; TrEMBL-Plants: tr|I1MMM4|I1MMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0084100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9474066..9476862) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTTATCTTTCACACAAGGTCGGTGGAACTATGAAAGATGGGGTGGATTTGACCCAATATCAAGCCGCAATGCTAA GCCTCCTGGAGTTGAATTGTGGGCTGTCTTTGATGTCCCTCTAGACCAGGTTGATGCTTCTTGGAAAAATTTAACCCATT CTCTGTCAGGTCTCTTCTGTGCTTCAATCAACTTCCTAGAGTCTTCTACCTCTTATTCTGCTCCTAAATGGGCATTTCAA TCAGCTTTAGGCAGTTTAAGATATGGTACACTGCCACGAGAAGCTGTCTGCACTGAGAATCTTACTCCGTGGTTGAAACT CCTTCCTTGTAGAGATAAAGCTGGCCTCTCTGCCTTAATGGATAGACCATCCATTTACAGAAGCTTCTACCACTCTCAGC GATTGCACTTGTCAATATCCGGAGCTTCTGCAGATGGGTTAGATTCACAAGTTATCCTAGAACAAACTCTTACAGTTGTA CTTCAGCCAAATATTCAGAGAGCTGGTATGAACTATCTCAGTGAAACAAAGATACAACCTAGCTGGTCTCTGAGTTCAAT ATTTGGGAGAAAAATCAATGGAAGATGTGTTCTTGCCAAGTTGAGTAATGTCTATCTTCAACTTGAGAGAGGTCTAGTTG CTCAAATTGAGAATCTCCAGAAGAATACTGCTGTATATGCTGCTAATGACTCAGGTCCAGACGATTTTAGAAGGAATATT GGCTTTGAATTATCTGTTATGCCTGACAGGGTGCATAGAGAAGTGGAAAAGAGCTCCTCAATTCTATATGAATATCCAAT CAAAGAGTATAAAGACACTGAACAATTTGATTTAGGATTAACATGGAAGCATCCAGTTGTTTGGTCCAGCCCACATGCAC CTTTATACGCCAGTAGATTTTTAATGGGGAGTGGAAATGAAAGAGGTACGATTTCAATATCCATGAAATCAACAGAATTG AGTCAGGGCTTCATTGCGACCAATAATACTGGTGAGAGGTGTAAGTTGCAAGTTAATGTTCTCCAAATTGTGCCTTGGTA TATTAAGGTATATTATCATACGTTACAGTTATTAGTTGATGAAAGGATTCAAGTAGTCTCAGATTTTGTTGAGAGAATGC GTGTTTCACCCTCTGAAGACAAAGTATCGACAGGGGTGATGGAGCTGGTTCTCAGATTTCCTTGTGAAGTAAAGTCAGCT TTATTAAATATAGAGTTTGATAAGGTTTGCTCTAATTTCTATTTCCATTTATATTTCTTCTATATATTTAACTCACTTTT TGTTTGATTGACATCAAACTCTATAAGTCAATGTTATTAAGGAACCTCGTAAATCTTAATCAGAAGATCATTCTAAATAA AGAAGACTGCTGATGATATTATATGGAAGTAGGAGAAATCATAGGAAATACGAGTTTGATAGTTGGTATACTTTATGACC TTCAAAACTCTAAATCACAGAGAACAGACTATAACTAAATGACATTAGATCCTGGTTGAAGCTATCTATGTGATATATTC ACCACAGACCCTTTTAGGATAGAGGATCAGTTTCTTCTTCAGATCAAGTTTGTTTTTGACATGCTTTTGTTGGTCTGCCT AGGGATTCTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGACATTCCCTCAGCAATAATAAGCTTTCCT GACTTCCATGCTGGTTTGCAATTTTCTGATGACTCTATAAGCAAGACACCAATGTTGTCTAAATTACAGGTTATTTAAAT CTGCACTCCATCTTTGCTCATAACTATGCTGCATACAAGATTCCTCTGTCATCCCTAACTGTCTGGTTCTTTACTGCAGG AAAAGAGCCCTGTTCTCTCTTACACAGAAGTTTTGCTTGTACCATTGACAACTCCTGATTTCAGTATGCCTTATAATGTC ATTACAATCACATGCACAATTTTTGCATTGTATTTTGGATCTTTGCTAAATGTACTCCGGAGACGAGTTGGAGAGGAGGA AAGACTTTTGAAAAACAAAGGTAATTCTCGACACTTCTATTGTCTGCATCCTGGTACATTTATTTTTTGATAAGCCTAGT TGTATTGAAAAGAAGTACAAGGGGTACTTCAACCCAATACAAAAGTAACAATAGTTGTTTATACAAAAATAAAGGGAAGT TTAAGGAGACGCAGCTGCATCCTGGTACATAAGTAACTTAATTTTGTACAACGTTGAGTAGCCCTAAGGTGGTAGTGTTT GGGAGACATCAGAATAGGTTGGATAAAAACTCAATGTGGTGCTTTTATGAGTTGTGGTTAATAAAGCTTCCTCACTTAAC ACCCCCTAAGCATCCACCCTTCTAAGACTCACTCTGTTCTCTCTTTGGGTTAGTTTACCAGACTGTTACCTGATACCTTG ATACTTATGATAGTGTGCAGTTATTACAAACTAGTCATGCAAACATAGTAGTATGGTGATATGTACTTCTGAAATTATAG ATTTAAGTTCAGGTAGAAGAATTTAATCTAAACCCTATGGTCTATAGCCCTAGATTTATGTATTTCTTCCCTGCCCTCCC TCTCATATTTTCATGTTTTCTTGCTCAGTTTCTAATATGTGCATTTTTCTACTTGTAGATGCAACCAAAGGTGCGTTCCT TCGTCGAGTATTAACTAAATTATCTTCCAAGCTTAGAGGGAGATCACCGGAATCTACTCAACCACGATCATCATTATCCT TCATTACTCCAAAATTGATTCTTAGAGTACTAGTGGTTGCAGGAATTGCAGTTGCATGGCACTACTACTCGCAATGA
CDS sequence (LotjaGi3g1v0084100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTATCTTTCACACAAGGTCGGTGGAACTATGAAAGATGGGGTGGATTTGACCCAATATCAAGCCGCAATGCTAA GCCTCCTGGAGTTGAATTGTGGGCTGTCTTTGATGTCCCTCTAGACCAGGTTGATGCTTCTTGGAAAAATTTAACCCATT CTCTGTCAGGTCTCTTCTGTGCTTCAATCAACTTCCTAGAGTCTTCTACCTCTTATTCTGCTCCTAAATGGGCATTTCAA TCAGCTTTAGGCAGTTTAAGATATGGTACACTGCCACGAGAAGCTGTCTGCACTGAGAATCTTACTCCGTGGTTGAAACT CCTTCCTTGTAGAGATAAAGCTGGCCTCTCTGCCTTAATGGATAGACCATCCATTTACAGAAGCTTCTACCACTCTCAGC GATTGCACTTGTCAATATCCGGAGCTTCTGCAGATGGGTTAGATTCACAAGTTATCCTAGAACAAACTCTTACAGTTGTA CTTCAGCCAAATATTCAGAGAGCTGGTATGAACTATCTCAGTGAAACAAAGATACAACCTAGCTGGTCTCTGAGTTCAAT ATTTGGGAGAAAAATCAATGGAAGATGTGTTCTTGCCAAGTTGAGTAATGTCTATCTTCAACTTGAGAGAGGTCTAGTTG CTCAAATTGAGAATCTCCAGAAGAATACTGCTGTATATGCTGCTAATGACTCAGGTCCAGACGATTTTAGAAGGAATATT GGCTTTGAATTATCTGTTATGCCTGACAGGGTGCATAGAGAAGTGGAAAAGAGCTCCTCAATTCTATATGAATATCCAAT CAAAGAGTATAAAGACACTGAACAATTTGATTTAGGATTAACATGGAAGCATCCAGTTGTTTGGTCCAGCCCACATGCAC CTTTATACGCCAGTAGATTTTTAATGGGGAGTGGAAATGAAAGAGGTACGATTTCAATATCCATGAAATCAACAGAATTG AGTCAGGGCTTCATTGCGACCAATAATACTGGTGAGAGGTGTAAGTTGCAAGTTAATGTTCTCCAAATTGTGCCTTGGTA TATTAAGGTATATTATCATACGTTACAGTTATTAGTTGATGAAAGGATTCAAGTAGTCTCAGATTTTGTTGAGAGAATGC GTGTTTCACCCTCTGAAGACAAAGTATCGACAGGGGTGATGGAGCTGGTTCTCAGATTTCCTTGTGAAGTAAAGTCAGCT TTATTAAATATAGAGTTTGATAAGGGATTCTTGCACATTGATGAATACCCTCCAGATGCTAATCAAGGATTTGACATTCC CTCAGCAATAATAAGCTTTCCTGACTTCCATGCTGGTTTGCAATTTTCTGATGACTCTATAAGCAAGACACCAATGTTGT CTAAATTACAGGAAAAGAGCCCTGTTCTCTCTTACACAGAAGTTTTGCTTGTACCATTGACAACTCCTGATTTCAGTATG CCTTATAATGTCATTACAATCACATGCACAATTTTTGCATTGTATTTTGGATCTTTGCTAAATGTACTCCGGAGACGAGT TGGAGAGGAGGAAAGACTTTTGAAAAACAAAGATGCAACCAAAGGTGCGTTCCTTCGTCGAGTATTAACTAAATTATCTT CCAAGCTTAGAGGGAGATCACCGGAATCTACTCAACCACGATCATCATTATCCTTCATTACTCCAAAATTGATTCTTAGA GTACTAGTGGTTGCAGGAATTGCAGTTGCATGGCACTACTACTCGCAATGA
Protein sequence (LotjaGi3g1v0084100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELSFTQGRWNYERWGGFDPISSRNAKPPGVELWAVFDVPLDQVDASWKNLTHSLSGLFCASINFLESSTSYSAPKWAFQ SALGSLRYGTLPREAVCTENLTPWLKLLPCRDKAGLSALMDRPSIYRSFYHSQRLHLSISGASADGLDSQVILEQTLTVV LQPNIQRAGMNYLSETKIQPSWSLSSIFGRKINGRCVLAKLSNVYLQLERGLVAQIENLQKNTAVYAANDSGPDDFRRNI GFELSVMPDRVHREVEKSSSILYEYPIKEYKDTEQFDLGLTWKHPVVWSSPHAPLYASRFLMGSGNERGTISISMKSTEL SQGFIATNNTGERCKLQVNVLQIVPWYIKVYYHTLQLLVDERIQVVSDFVERMRVSPSEDKVSTGVMELVLRFPCEVKSA LLNIEFDKGFLHIDEYPPDANQGFDIPSAIISFPDFHAGLQFSDDSISKTPMLSKLQEKSPVLSYTEVLLVPLTTPDFSM PYNVITITCTIFALYFGSLLNVLRRRVGEEERLLKNKDATKGAFLRRVLTKLSSKLRGRSPESTQPRSSLSFITPKLILR VLVVAGIAVAWHYYSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 575 | 575 | 2.4E-210 | ||
| Pfam | 1 | 523 | 523 | 3.2E-153 | ||
| PANTHER | 1 | 575 | 575 | 2.4E-210 | – | |
| Phobius | 1 | 481 | 481 | - | – | |
| TMHMM | 481 | 503 | 23 | - | – | |
| Phobius | 482 | 503 | 22 | - | – | |
| Phobius | 504 | 556 | 53 | - | – | |
| TMHMM | 557 | 574 | 18 | - | – | |
| Phobius | 557 | 574 | 18 | - | – | |
| Phobius | 575 | 576 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Attachment of GPI anchor to protein | A transamidation reaction that results in the cleavage of the polypeptide chain and the concomitant transfer of the GPI anchor to the newly formed carboxy-terminal amino acid of the anchored protein. The cleaved C-terminal contains the C-terminal GPI signal sequence of the newly synthesized polypeptide chain. | ||
| Cellular component | GPI-anchor transamidase complex | An enzyme complex which in humans and yeast consists of at least five proteins; for example, the complex contains GAA1, GPI8, PIG-S, PIG-U, and PIG-T in human, and Gaa1p, Gab1p, Gpi8p, Gpi16p, and Gpi17p in yeast. Catalyzes the posttranslational attachment of the carboxyl-terminus of a precursor protein to a GPI-anchor. |
Expression pattern of LotjaGi3g1v0084100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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