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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0088800 |
Transcript ID | LotjaGi3g1v0088800.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT3G07320.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q06915|EA6_ARATH Probable glucan endo-1,3-beta-glucosidase A6; TrEMBL-Plants: tr|G7LF67|G7LF67_MEDTR O-glycosyl hydrolase family 17 protein; Found in the gene: LotjaGi3g1v0088800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:10054463..10055849) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAAACTATAACCCAAAACATGAACTAACCCCATTGTTTCCCCATGTTCATCAGATGCAGAAATCTCAGGTCAACCAG GAGTGAACTATGGTCAACTGGGTAACAATCTTCCACCACCAACAACCTCTGTGAATCTCATCAAATCCCTGAAAGCAAAA CGCGTCAAAATCTACGACACAAATCCAGAAATCCTCAAAGCCCTCGAAAACACAGACATCCAAGTCTCCATCATGGTCCC GAACGAACTCGTCACCAACATCTCCACCAACCAAACACTCTCCGACCACTGGATCCAATCCAACGTCGTACCCTTCTACC GGAAAACCCTCATCCGCTACCTCCTCGTCGGCAACGAACTCACCAGCTCCACCGGTAACGAAACGTGGCCTCACATCGTC CCCGCCATGCGCAGAATCAAACACTCCCTCACGATCTTCCATCTTCACAAAATCAAGGTTGGAACCCCTTTCGCTATGGA CGTTCTGCAATCGTCGTTTCCACCCTCAAACGGTACCTTCAGAAACGACATTGCGTTTAGTCTCATCAAGCCCATGTTGG AATTCTTGCACAAAACCAGCTCGTTTTTCTTCCTGGATGTGTACCCGTTTTTCGCCTGGGCTTCGGATCCGGTCAATATT AACCTCAGTTACGCTCTTTTTGATTCGGGCGATAACATCAGGGTAACGGATTCGGGTACGGGTTTGGTTTACACCAATTT GTTCGACCAGATGGTGGACGCGGTTTACTTCGCAATGGAGCGGCTCGGGTACCCAGGTATTCAGATCTTCATTGCGGAAA CGGGTTGGCCCAGTAAAGGAAACCTGGACCAAATTGGAGCGAATGTTCACAACGCCGGCACATATAATAGAAATTTCGTG AAGAAGGTTACTAGAAAACCGCCGGTTGGGACTCCGGCTCGACCGGGTTCGGTTCTTCCGTCTTTCATTTTTGCATTGTT TAATGAGAACTTGAAACCGGGTTTGGGCACTGAGCGAAACTTCGGATTGTTGTACCCGAACGGGTCGAGTGTTTACGAGA TTGACCTCTCGGGGAAGACGCCGGAGTCAGAGCTCGCGTCGTTGCCGACAACGGGGGATTACAAGGGGAAGGCATGGTGC GTGGTGGCAGAGGGGGCGAACGAGACTGCGGTGGCGGCTGCGTTGTCGTATGCTTGCTCGCAAGGGAACCGAACTTGTGA CCCGATCCAACCTGGGAAATCGTGCTTTAAACCCGACACCGTTGTAGGGCACGCTAGCTATGCATTTAGCTCTTACTGGG CGCAGATGAGACCTGTTGGGGGAACCTGTTTCTTCAATGGACTCGGCATCGCAACTGCAACAAATCCAAGTAAGGGCTCT AGTTTTTTTTCTTAATTTTTTTTTTAA
CDS sequence (LotjaGi3g1v0088800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCCCGAACGAACTCGTCACCAACATCTCCACCAACCAAACACTCTCCGACCACTGGATCCAATCCAACGTCGTACC CTTCTACCGGAAAACCCTCATCCGCTACCTCCTCGTCGGCAACGAACTCACCAGCTCCACCGGTAACGAAACGTGGCCTC ACATCGTCCCCGCCATGCGCAGAATCAAACACTCCCTCACGATCTTCCATCTTCACAAAATCAAGGTTGGAACCCCTTTC GCTATGGACGTTCTGCAATCGTCGTTTCCACCCTCAAACGGTACCTTCAGAAACGACATTGCGTTTAGTCTCATCAAGCC CATGTTGGAATTCTTGCACAAAACCAGCTCGTTTTTCTTCCTGGATGTGTACCCGTTTTTCGCCTGGGCTTCGGATCCGG TCAATATTAACCTCAGTTACGCTCTTTTTGATTCGGGCGATAACATCAGGGTAACGGATTCGGGTACGGGTTTGGTTTAC ACCAATTTGTTCGACCAGATGGTGGACGCGGTTTACTTCGCAATGGAGCGGCTCGGGTACCCAGGTATTCAGATCTTCAT TGCGGAAACGGGTTGGCCCAGTAAAGGAAACCTGGACCAAATTGGAGCGAATGTTCACAACGCCGGCACATATAATAGAA ATTTCGTGAAGAAGGTTACTAGAAAACCGCCGGTTGGGACTCCGGCTCGACCGGGTTCGGTTCTTCCGTCTTTCATTTTT GCATTGTTTAATGAGAACTTGAAACCGGGTTTGGGCACTGAGCGAAACTTCGGATTGTTGTACCCGAACGGGTCGAGTGT TTACGAGATTGACCTCTCGGGGAAGACGCCGGAGTCAGAGCTCGCGTCGTTGCCGACAACGGGGGATTACAAGGGGAAGG CATGGTGCGTGGTGGCAGAGGGGGCGAACGAGACTGCGGTGGCGGCTGCGTTGTCGTATGCTTGCTCGCAAGGGAACCGA ACTTGTGACCCGATCCAACCTGGGAAATCGTGCTTTAAACCCGACACCGTTGTAGGGCACGCTAGCTATGCATTTAGCTC TTACTGGGCGCAGATGAGACCTGTTGGGGGAACCTGTTTCTTCAATGGACTCGGCATCGCAACTGCAACAAATCCAAGTA AGGGCTCTAGTTTTTTTTCTTAA
Protein sequence (LotjaGi3g1v0088800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPNELVTNISTNQTLSDHWIQSNVVPFYRKTLIRYLLVGNELTSSTGNETWPHIVPAMRRIKHSLTIFHLHKIKVGTPF AMDVLQSSFPPSNGTFRNDIAFSLIKPMLEFLHKTSSFFFLDVYPFFAWASDPVNINLSYALFDSGDNIRVTDSGTGLVY TNLFDQMVDAVYFAMERLGYPGIQIFIAETGWPSKGNLDQIGANVHNAGTYNRNFVKKVTRKPPVGTPARPGSVLPSFIF ALFNENLKPGLGTERNFGLLYPNGSSVYEIDLSGKTPESELASLPTTGDYKGKAWCVVAEGANETAVAAALSYACSQGNR TCDPIQPGKSCFKPDTVVGHASYAFSSYWAQMRPVGGTCFFNGLGIATATNPSKGSSFFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 272 | 272 | 3.0E-95 | – | |
PANTHER | 1 | 373 | 373 | 5.2E-184 | – | |
PANTHER | 1 | 373 | 373 | 5.2E-184 | – | |
Pfam | 2 | 271 | 270 | 1.6E-80 | ||
SUPERFAMILY | 2 | 271 | 270 | 1.28E-67 | ||
ProSitePatterns | 183 | 196 | 14 | - | ||
SMART | 294 | 378 | 85 | 7.1E-37 | ||
Pfam | 295 | 365 | 71 | 2.5E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0088800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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