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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0117000 |
| Transcript ID | LotjaGi3g1v0117000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | IQ domain-containing protein; TAIR: AT5G13460.1 IQ-domain 11; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|I1LL80|I1LL80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14335523..14339379) extracted from Lotus japonicus Gifu genome v1.2.
AAATCATATCCACTACTTGTGATTATTGAGGAAAAATCTCAAGTCTTGATATCTGTGCACATTTGTGAAATCTATTCAAA GTTCCACAGTCTTGGGTATCAGATCCTATAATAAAAGAATGTTTGCTGATTTCAAAGCTGCTCCATTTGATTTTAAGGAC AACACTGCTTTTTTTTTCCATGTACCTTAGCTCCCTTAAACGGTGATTATTGTCCCTTTTCAAAGAATTTATGGAATTTC ATAACATGGGTAGGTAATCAACTTGGATGTTGGATCTCACTTAATCCAAATCACATGCATCATTTTTATCCTTCAACTAT CTTGATTTGTGTGCATTAATGTTAAGATTACTTTTAAAGCAAGGCTCTGATTAACGTGCATGTTTTGGTCTTTGCAAAGA CTAGTTGTGCCTATAAGAAGCTAACTCTATGGCAAGTTCTGCAAATTGGTCCTTCTTTTCCGGACAAGTCTAATGTTGAG TTTTGCACAAATCCATTATTTTTTATTGAACACATGTATCTTTACTTAAGCCGGTTCAGCTGAGTTTGTTTTTCATATAT ATTCAAGACTCGAATCTGAGAATTTGCTTAAGAAGAACCAAACATCTAGCTACGACTTGAACCAACCACCATCAGAAGCT TCACAAATCTATTATTTAAGTCAGTTAAATGCCATCTTTGTGATTTTCACCCATCTACTTATTCAAACTGAGGATATTTG CTGTGTAGAAGAGGATTAATTCTTATGAGCATTTTTTTTTTCAGATCACAGAAACTGAAGCTGGTTCATGTGATATAGTT AAATGGCCAAGGGCTGGTTTAGCATGGTGAAGAGGCTCTTTATATGGGATACACATTCCACACAAGAGAAGGTAAAATTT CTTGCTTCTTTGATTAATTCCTTAAGTAATCTTGTTGTATTGCTCATGAGAGAAAACCTGTTTTCAGAAGGAGAAAAGAA GGAAGTGGATATTTGGGAGAGTAAAGAACAAGAGATTGGCTACAATTGAAGCCCCACCACCATCAAAAGAAACAAGACTG AGTGAAGCTGAGGAAAAACACAGCAAGCATGCTTTGAAAGTGGCTATTGCCTCTGCTGCTGCTGCTGAAGCTGCTATTAC TGCTGCTCATGTTGCTGTTGAGGTTGTTAGGCTCCAATCTGCACACCAATGTAGGGACAAGTCAGAAGAGTTTGAAAATG TTAAAACTTGGCATGAGGCTTCTCAATTCACATACAATTTCCAGAGGAAGATTGAAGAATCCTCAGCCATCAAAATTCAA ACAACATTTAGAGGTTACCTAGTGAGTTTGTCCAACCTCTCATCTTTGATTTAATATCAGCTTAAATATTCTGTCCACCA TCTTCTGTTTTGCTCATTGATGGGTTCAATTAAATTTGAGAAACAGATAGTGTGGATTTGAATACAACTTTGGTTAAGGT GATCGGACTTTCATCCTATTCCATAAGAAGAATTCTGTTCACTTTTTCTGCTAAAGTGAACCCAAGTGCCAACAGATATC CAACACACCTATAGTTAAGGATGCAAAATCTCAAGGTGAACCCAGGTTTCAGGAGCTGAAACTTAGTAGAAAATGACCAA TTTACTGACTCACTTAAATTCTTCAGCCAATTACTGATTTCCCAAACAATTGTAAGATAATTTTGGAAGATAAACTTGAT TTCTATATTGAAAATTTCATATGTTTAATTTCTATGATAGGAAGATAAACAAGGAAAATTGGAGAATGACAGAAAAAAAC AAAGAGAGAAAGTTTAGTAGATGAAATTAAGGAACTGTAGTCACTCTACTATATTATTAAACATCGTATGTCTTATTAAT TGGGGTTTGGATTCATTCACACTGACTTTCTCTTCTATCACAATTCCACTTACTTTCTATTTTTATCTCTAGCTTCTTTT TTTATCAGATCACTTATCATATCTCTCGGTTCTCTCTCTCTGCTAATATTCTTATCTTTATATGAATGTGGGTACTAAGT GGATTTGGAGTGTTGATGAAATTTTGTTTCCTATTAACTGAATGGTAAGACATTGCAGGCAAGGAAAGCTTTGAGAGCAT TGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGCAGAGCTGTTAGACGCCACACTATTAGTACTCTGAAGAGCTTG CAGTCCATAGTAAATATCCAGTCCCAGGTCTTTGCAAGAAATCTCCAAATGGTTGGAGGAAGATTGGATTGTGGTGAAAA TGAAGAGATGCAGGATTCAAGAGACAAGATAATAAAGGTAGGCATAGCAAGTTAAAATTTATCATTAGTTTTCCTCAAAT TGCAAAACTGAAGTTTCACTTCAAACACCATAATCCACTCTTCATTGTGAATGCTTATAAACTATGTTACTTATGTTAAG AAGTCCACCATTGATTCACTAGAGATATGGTCAAAATCGTCCTTTAGAGTAGCTCTCACCTCTAAGCTAGCTTTTTTGGT AGGGGTAGACCTAACTCGAATTCAAAGTTGGTATCATAGAACATCCATTTATTAGGGACCACCCATATATGGACCACTAG CTGGTGTTCATTCTTGTAAATTTCACGCTTCAGTGTCCAACACTAGATGTGAGGGGTGTGTTGAGAAGTCTCACATTAAC TAAATATCCCTAAAATAGTTCTTATAAAGGGTAGAGAACTCTCACTTCTAAGATAGCTTTTGGGTAGAGTCAGGCAGTCA GCCGTAACCTGAATTCTAAGAACTTACATGTTATCAATAATTCAGATTGAATTTGAAACATATTTTTCATGTTTTTCAGA TAGACTCCAACAGTGAGAGAAGGTGGGATGACAGTATTTTATTGAAGAAGGAGGTGGATGCCTCTAGCATACACAAGAAA GAAGCTGTGCATAAGAGAGACAGGATAAAAGAATACTCTTATAACCATAGAGTAAGCTCTTAAACCCTTTTTTGCTCTTT TGAAATTTTACTCATTAAGGAACTCATACTAAAGTACAAAAACCTCTCAGAGGTCAGCTGAATCAGAAAGAAATAAAGTA AATGGAAGATGGAGATACTGGATGGAAGATTGGGTCGACACCCAACTTTCCAAGAGTAAAGAACTTGAAGATTTAGAATC GGTTTTCAGCTCACATTCTAGAGCTGGTGAGGAATGTGGAAGAAGATCACAACTCAAGCTAAGACATGTTCAGAGAACAA ATCAAGTTGAAGGTTTGGATTCTCCAATACTTTCTTCAAGGAATCGCTCATTTCCAAGTTCTCCTGCATTTCCTACATAC ATGGCTGCAACAAAATCAGCACAAGCAAAAGTGAGATCCGCAAGCTCTCCAAAAGTGAGGATAGGAGGGAATTTGGACAT GAACTCTGATTGCTATTCTCCATGCAACAGAAAGCTATCTATTGTTTCTTCCATTAACCATGAAGTTCTCAATTATGGTA GGACAAGCAAGCTTAGCAATAATCAGCAAAGATCTCCTAACTTAAAGGGTCTTTCAAGGCCTTTAAAATCAAGCCAGAAT ATTAAAGATCTCAGTATTAATTCAGACTTCTCAACTCACAATTGAGATCAACAAAGTAAATTTCAAATGAAGTTATAAAT ACTGGTGTTGCATCCACTACTATAGTTTCATGTTACCATGAGAGGGCTTGAATTGAAGTGAGAATCTTTTTTGGTCTCAT GTATATGCCAGCACAAATTATACTTTTAGTTGAGTGGGCATTGGTGTGACAGAAATTTGTTAAGTTCTTCACTGATTTGT TTATTTCTTACTAAACCTTGTCTGATGTATTTTGTGGTGTTATATTATACATAACCAATGTTCCTGGTTTTTGGTTTGAG TAAATCATCAAATTGTC
CDS sequence (LotjaGi3g1v0117000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGGGCTGGTTTAGCATGGTGAAGAGGCTCTTTATATGGGATACACATTCCACACAAGAGAAGAAGGAGAAAAG AAGGAAGTGGATATTTGGGAGAGTAAAGAACAAGAGATTGGCTACAATTGAAGCCCCACCACCATCAAAAGAAACAAGAC TGAGTGAAGCTGAGGAAAAACACAGCAAGCATGCTTTGAAAGTGGCTATTGCCTCTGCTGCTGCTGCTGAAGCTGCTATT ACTGCTGCTCATGTTGCTGTTGAGGTTGTTAGGCTCCAATCTGCACACCAATGTAGGGACAAGTCAGAAGAGTTTGAAAA TGTTAAAACTTGGCATGAGGCTTCTCAATTCACATACAATTTCCAGAGGAAGATTGAAGAATCCTCAGCCATCAAAATTC AAACAACATTTAGAGGTTACCTAGCAAGGAAAGCTTTGAGAGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGT GGCAGAGCTGTTAGACGCCACACTATTAGTACTCTGAAGAGCTTGCAGTCCATAGTAAATATCCAGTCCCAGGTCTTTGC AAGAAATCTCCAAATGGTTGGAGGAAGATTGGATTGTGGTGAAAATGAAGAGATGCAGGATTCAAGAGACAAGATAATAA AGATAGACTCCAACAGTGAGAGAAGGTGGGATGACAGTATTTTATTGAAGAAGGAGGTGGATGCCTCTAGCATACACAAG AAAGAAGCTGTGCATAAGAGAGACAGGATAAAAGAATACTCTTATAACCATAGAAGGTCAGCTGAATCAGAAAGAAATAA AGTAAATGGAAGATGGAGATACTGGATGGAAGATTGGGTCGACACCCAACTTTCCAAGAGTAAAGAACTTGAAGATTTAG AATCGGTTTTCAGCTCACATTCTAGAGCTGGTGAGGAATGTGGAAGAAGATCACAACTCAAGCTAAGACATGTTCAGAGA ACAAATCAAGTTGAAGGTTTGGATTCTCCAATACTTTCTTCAAGGAATCGCTCATTTCCAAGTTCTCCTGCATTTCCTAC ATACATGGCTGCAACAAAATCAGCACAAGCAAAAGTGAGATCCGCAAGCTCTCCAAAAGTGAGGATAGGAGGGAATTTGG ACATGAACTCTGATTGCTATTCTCCATGCAACAGAAAGCTATCTATTGTTTCTTCCATTAACCATGAAGTTCTCAATTAT GGTAGGACAAGCAAGCTTAGCAATAATCAGCAAAGATCTCCTAACTTAAAGGGTCTTTCAAGGCCTTTAAAATCAAGCCA GAATATTAAAGATCTCAGTATTAATTCAGACTTCTCAACTCACAATTGA
Protein sequence (LotjaGi3g1v0117000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKGWFSMVKRLFIWDTHSTQEKKEKRRKWIFGRVKNKRLATIEAPPPSKETRLSEAEEKHSKHALKVAIASAAAAEAAI TAAHVAVEVVRLQSAHQCRDKSEEFENVKTWHEASQFTYNFQRKIEESSAIKIQTTFRGYLARKALRALKGIVKLQAIIR GRAVRRHTISTLKSLQSIVNIQSQVFARNLQMVGGRLDCGENEEMQDSRDKIIKIDSNSERRWDDSILLKKEVDASSIHK KEAVHKRDRIKEYSYNHRRSAESERNKVNGRWRYWMEDWVDTQLSKSKELEDLESVFSSHSRAGEECGRRSQLKLRHVQR TNQVEGLDSPILSSRNRSFPSSPAFPTYMAATKSAQAKVRSASSPKVRIGGNLDMNSDCYSPCNRKLSIVSSINHEVLNY GRTSKLSNNQQRSPNLKGLSRPLKSSQNIKDLSINSDFSTHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 434 | 433 | 3.0E-212 | – | |
| PANTHER | 2 | 434 | 433 | 3.0E-212 | – | |
| Gene3D | 125 | 179 | 55 | 5.9E-6 | – | |
| SMART | 125 | 147 | 23 | 4.9E-5 | ||
| ProSiteProfiles | 126 | 154 | 29 | 10.53 | ||
| Pfam | 128 | 147 | 20 | 5.8E-6 | ||
| SMART | 148 | 169 | 22 | 410.0 | ||
| Pfam | 150 | 167 | 18 | 0.26 | ||
| ProSiteProfiles | 150 | 177 | 28 | 7.62 | ||
| Pfam | 329 | 417 | 89 | 2.4E-12 | ||
| MobiDBLite | 403 | 442 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0117000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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