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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025064
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We have found 52 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.497s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0315489.1
n.a. IQ domain-containing protein [Medicago truncatula] gi|357477495|ref|XP_003609033.1| chr0 164679668 164689543 +
2 domain predictions
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Lj0g3v0315489.3
n.a. PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] gi|356562818|ref|XP_003549665.1| chr0 164686013 164690017 +
2 domain predictions
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Lj0g3v0319219.1
n.a. PREDICTED: protein IQ-DOMAIN 14-like [Glycine max] gi|356509249|ref|XP_003523363.1| chr0 166651397 166656860 +
2 domain predictions
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Lj0g3v0360779.1
n.a. PREDICTED: protein IQ-DOMAIN 1-like [Glycine max] gi|356545965|ref|XP_003541403.1| chr0 190016819 190017457 +
2 domain predictions
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Lj1g3v0112660.1
n.a. PREDICTED: protein IQ-DOMAIN 1-like [Cicer arietinum] gi|502119644|ref|XP_004496689.1| chr1 1057972 1060825 -
2 domain predictions
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Lj1g3v0466710.1
n.a. PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] gi|356516764|ref|XP_003527063.1| chr1 6246826 6252612 -
2 domain predictions
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Lj1g3v2155480.1
n.a. PREDICTED: protein IQ-DOMAIN 32-like [Glycine max] gi|356509638|ref|XP_003523553.1| chr1 25988436 25992109 +
2 domain predictions
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Lj2g3v0876700.1
n.a. PREDICTED: protein IQ-DOMAIN 14-like isoform X3 [Cicer arietinum] gi|502138683|ref|XP_004503494.1| chr2 13455550 13457927 +
2 domain predictions
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Lj2g3v1337650.1
n.a. PREDICTED: protein IQ-DOMAIN 31-like [Cicer arietinum] gi|502093660|ref|XP_004490012.1| chr2 20983062 20988731 -
2 domain predictions
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Lj3g3v0290180.1
n.a. Iq-domain 14 isoform 1 [Theobroma cacao] gi|508779692|gb|EOY26948.1| chr3 1880091 1881240 +
2 domain predictions
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Lj3g3v0819880.1
n.a. PREDICTED: protein IQ-DOMAIN 14-like [Glycine max] gi|356541508|ref|XP_003539217.1| chr3 9862613 9866211 -
2 domain predictions
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Lj3g3v2318280.1
n.a. PREDICTED: protein IQ-DOMAIN 14-like [Cicer arietinum] gi|502156120|ref|XP_004510319.1| chr3 28830595 28832878 +
2 domain predictions
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Lj3g3v3640350.1
n.a. PREDICTED: protein IQ-DOMAIN 14-like [Glycine max] gi|356531619|ref|XP_003534374.1| chr3 44498895 44502656 +
2 domain predictions
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Lj4g3v0510300.1
n.a. PREDICTED: protein IQ-DOMAIN 14-like isoform X1 [Cicer arietinum] gi|502142915|ref|XP_004505151.1| chr4 8750735 8755184 -
2 domain predictions
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Lj5g3v0875440.1
n.a. PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Cicer arietinum] gi|502179081|ref|XP_004516369.1| chr5 12645099 12649659 +
2 domain predictions
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Lj5g3v2027120.1
n.a. PREDICTED: protein IQ-DOMAIN 14-like [Cicer arietinum] gi|502175393|ref|XP_004515721.1| chr5 28537151 28540553 -
2 domain predictions
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Lj5g3v2045510.1
n.a. PREDICTED: protein IQ-DOMAIN 1-like [Cicer arietinum] gi|502119644|ref|XP_004496689.1| chr5 29177863 29180716 +
2 domain predictions
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Lj6g3v0485150.1
n.a. PREDICTED: protein IQ-DOMAIN 14-like isoform X3 [Cicer arietinum] gi|502138683|ref|XP_004503494.1| chr6 4818036 4821098 +
2 domain predictions
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LotjaGi1g1v0196100.1
n.a. Protein IQ-DOMAIN 1; TAIR: AT3G49260.1 IQ-domain 21; Swiss-Prot: sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1; TrEMBL-Plants: tr|V7CTN4|V7CTN4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0196100 LjG1.1_chr1 39097074 39102481 -
2 domain predictions
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LotjaGi1g1v0216100.1
n.a. IQ domain-containing protein; TAIR: AT1G74690.1 IQ-domain 31; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|A0A1J7GHT3|A0A1J7GHT3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0216100 LjG1.1_chr1 47597579 47604936 +
2 domain predictions
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LotjaGi1g1v0216100.2
n.a. IQ domain-containing protein; TAIR: AT1G74690.1 IQ-domain 31; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|A0A1J7GHT3|A0A1J7GHT3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0216100 LjG1.1_chr1 47597579 47604936 +
2 domain predictions
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LotjaGi1g1v0216100.3
n.a. IQ domain-containing protein; TAIR: AT1G74690.1 IQ-domain 31; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|A0A1J7GHT3|A0A1J7GHT3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0216100 LjG1.1_chr1 47597617 47604881 +
2 domain predictions
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LotjaGi1g1v0216100.4
n.a. IQ domain-containing protein; TAIR: AT1G74690.1 IQ-domain 31; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|A0A1J7GHT3|A0A1J7GHT3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0216100 LjG1.1_chr1 47597901 47604851 +
2 domain predictions
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LotjaGi1g1v0286800.1
n.a. IQ domain-containing protein; TAIR: AT3G49260.1 IQ-domain 21; Swiss-Prot: sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1; TrEMBL-Plants: tr|A0A151RZV4|A0A151RZV4_CAJCA Protein IQ-DOMAIN 1; Found in the gene: LotjaGi1g1v0286800 LjG1.1_chr1 69656017 69661521 +
2 domain predictions
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LotjaGi1g1v0286800.2
n.a. IQ domain-containing protein; TAIR: AT3G49260.1 IQ-domain 21; Swiss-Prot: sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1; TrEMBL-Plants: tr|A0A151RZV4|A0A151RZV4_CAJCA Protein IQ-DOMAIN 1; Found in the gene: LotjaGi1g1v0286800 LjG1.1_chr1 69656017 69661521 +
2 domain predictions
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LotjaGi1g1v0426800_LC.1
n.a. IQ-domain protein, putative; TAIR: AT1G19870.2 IQ-domain 32; Swiss-Prot: sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32; TrEMBL-Plants: tr|K7KSN9|K7KSN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0426800_LC LjG1.1_chr1 92114519 92118422 +
2 domain predictions
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LotjaGi1g1v0693500.1
n.a. Protein IQ-DOMAIN 1; TAIR: AT5G03040.1 IQ-domain 2; Swiss-Prot: sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1; TrEMBL-Plants: tr|G7L1R6|G7L1R6_MEDTR IQ calmodulin-binding motif protein; Found in the gene: LotjaGi1g1v0693500 LjG1.1_chr1 126115239 126119712 +
2 domain predictions
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LotjaGi2g1v0147300.1
n.a. IQ domain-containing protein; TAIR: AT5G62070.1 IQ-domain 23; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|K7MIL1|K7MIL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0147300 LjG1.1_chr2 52842863 52848982 -
2 domain predictions
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LotjaGi2g1v0225500.1
n.a. IQ domain-containing protein; TAIR: AT3G16490.1 IQ-domain 26; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|A0A0B2QZ57|A0A0B2QZ57_GLYSO Protein IQ-DOMAIN 31; Found in the gene: LotjaGi2g1v0225500 LjG1.1_chr2 68268295 68270899 +
2 domain predictions
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LotjaGi2g1v0307200.1
n.a. IQ domain-containing protein; TAIR: AT1G14380.7 IQ-domain 28; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|I1J5M2|I1J5M2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0307200 LjG1.1_chr2 78156090 78162709 -
2 domain predictions
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LotjaGi2g1v0432100.1
n.a. IQ domain-containing protein; TAIR: AT4G23060.1 IQ-domain 22; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|I1JA45|I1JA45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0432100 LjG1.1_chr2 92904418 92908768 +
2 domain predictions
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LotjaGi3g1v0021900.1
n.a. IQ domain-containing protein; TAIR: AT3G16490.1 IQ-domain 26; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|A0A151SHD8|A0A151SHD8_CAJCA Protein IQ-DOMAIN 31; Found in the gene: LotjaGi3g1v0021900 LjG1.1_chr3 2368060 2370911 +
2 domain predictions
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LotjaGi3g1v0117000.1
n.a. IQ domain-containing protein; TAIR: AT5G13460.1 IQ-domain 11; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|I1LL80|I1LL80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117000 LjG1.1_chr3 14335312 14339399 +
2 domain predictions
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LotjaGi3g1v0117000.2
n.a. IQ domain-containing protein; TAIR: AT5G13460.1 IQ-domain 11; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|I1LL80|I1LL80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117000 LjG1.1_chr3 14335523 14339379 +
2 domain predictions
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LotjaGi3g1v0117000.3
n.a. IQ domain-containing protein; TAIR: AT5G13460.1 IQ-domain 11; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|I1LL80|I1LL80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117000 LjG1.1_chr3 14335615 14339379 +
2 domain predictions
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LotjaGi3g1v0372100.1
n.a. IQ domain-containing protein; TAIR: AT3G16490.1 IQ-domain 26; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|I1KGH8|I1KGH8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0372100 LjG1.1_chr3 76209921 76213699 +
2 domain predictions
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LotjaGi3g1v0372100.2
n.a. IQ domain-containing protein; TAIR: AT3G16490.1 IQ-domain 26; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|I1KGH8|I1KGH8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0372100 LjG1.1_chr3 76209939 76213697 +
2 domain predictions
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LotjaGi3g1v0372100.3
n.a. IQ domain-containing protein; TAIR: AT3G16490.1 IQ-domain 26; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|I1KGH8|I1KGH8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0372100 LjG1.1_chr3 76211498 76213607 +
2 domain predictions
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LotjaGi3g1v0402200.1
n.a. Protein iq-domain 1; TAIR: AT1G01110.2 IQ-domain 18; Swiss-Prot: sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1; TrEMBL-Plants: tr|V7ARS0|V7ARS0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0402200 LjG1.1_chr3 80469254 80473457 -
2 domain predictions
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LotjaGi3g1v0545900.1
n.a. IQ domain-containing protein; TAIR: AT5G13460.1 IQ-domain 11; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|A0A127ZNP0|A0A127ZNP0_CAJCA Calmodulin binding protein; Found in the gene: LotjaGi3g1v0545900 LjG1.1_chr3 96217245 96221165 +
2 domain predictions
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LotjaGi3g1v0545900.2
n.a. IQ domain-containing protein; TAIR: AT5G13460.1 IQ-domain 11; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|A0A127ZNP0|A0A127ZNP0_CAJCA Calmodulin binding protein; Found in the gene: LotjaGi3g1v0545900 LjG1.1_chr3 96217282 96221156 +
2 domain predictions
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LotjaGi4g1v0068300.1
n.a. IQ domain-containing protein; TAIR: AT3G59690.1 IQ-domain 13; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|G7JNM9|G7JNM9_MEDTR IQ calmodulin-binding motif protein; Found in the gene: LotjaGi4g1v0068300 LjG1.1_chr4 8585294 8591566 -
2 domain predictions
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LotjaGi4g1v0068300.2
n.a. IQ domain-containing protein; TAIR: AT3G59690.1 IQ-domain 13; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|G7JNM9|G7JNM9_MEDTR IQ calmodulin-binding motif protein; Found in the gene: LotjaGi4g1v0068300 LjG1.1_chr4 8585922 8589818 -
2 domain predictions
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LotjaGi4g1v0221100.1
n.a. IQ domain-containing protein; TAIR: AT4G23060.1 IQ-domain 22; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|A0A072UPT6|A0A072UPT6_MEDTR Calmodulin-binding protein; Found in the gene: LotjaGi4g1v0221100 LjG1.1_chr4 52086137 52090343 -
2 domain predictions
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LotjaGi4g1v0247800.1
n.a. IQ domain-containing protein; TAIR: AT1G18840.1 IQ-domain 30; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|B7FLN4|B7FLN4_MEDTR IQ calmodulin-binding motif protein; Found in the gene: LotjaGi4g1v0247800 LjG1.1_chr4 59938703 59947363 +
2 domain predictions
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LotjaGi4g1v0444600.1
n.a. IQ domain-containing protein; TAIR: AT3G16490.1 IQ-domain 26; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|V7CQ97|V7CQ97_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0444600 LjG1.1_chr4 81750907 81754396 -
2 domain predictions
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LotjaGi4g1v0444600.2
n.a. IQ domain-containing protein; TAIR: AT3G16490.1 IQ-domain 26; Swiss-Prot: sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31; TrEMBL-Plants: tr|V7CQ97|V7CQ97_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0444600 LjG1.1_chr4 81751116 81754517 -
2 domain predictions
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LotjaGi5g1v0075700.1
n.a. Protein IQ-DOMAIN 1; TAIR: AT5G03040.1 IQ-domain 2; Swiss-Prot: sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1; TrEMBL-Plants: tr|K7LZM0|K7LZM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0075700 LjG1.1_chr5 12489399 12493815 -
2 domain predictions
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LotjaGi5g1v0075700.2
n.a. Protein IQ-DOMAIN 1; TAIR: AT5G03040.1 IQ-domain 2; Swiss-Prot: sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1; TrEMBL-Plants: tr|K7LZM0|K7LZM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0075700 LjG1.1_chr5 12489522 12493824 -
2 domain predictions
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LotjaGi5g1v0135300.1
n.a. IQ domain-containing protein; TAIR: AT5G03960.2 IQ-domain 12; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|A0A072VI83|A0A072VI83_MEDTR IQ calmodulin-binding motif protein, putative; Found in the gene: LotjaGi5g1v0135300 LjG1.1_chr5 32085736 32090567 +
2 domain predictions
 –