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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0137700 |
Transcript ID | LotjaGi3g1v0137700.3 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Epidermal patterning factor; TAIR: AT1G34245.1 Putative membrane lipoprotein; Swiss-Prot: sp|Q8LC53|EPF2_ARATH Protein EPIDERMAL PATTERNING FACTOR 2; TrEMBL-Plants: tr|K7MDZ9|K7MDZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0137700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:17879214..17883575) extracted from Lotus japonicus Gifu genome v1.2.
AAAGTGCCACCTAATTGTTTTCTTTAAGAAATTGAAAGAAAGAGGCAAACGCGCGTTTCAATCAAGAGCGCAATTATTGG TCAAAACGCTTCCATCATCGTCTTGTTCTTTCGTTCCATTCTCTGTCACTGAGCTGAACTATAAATTTCAAGCCATTTCA AACTCTGTTTCTGCAATTCGAATCGCGATTTCAACTGTTTTGATTTTCGAATTCGAAGATGGCGACGTCGAACAAGATCG AACGCGGTCACCAGATGTACCGTGACGGACGATACAGCGAGGCGTTAGGGTTTTACACGGAGGCGATCGCCATGGCCAAG ACCAATCCTCAGAAGATCGCTTTGCATAGCAATCGTGCTGCTTGCTTCCTCAAGCTTCACCATTTCAACAAGGTTCCCTT TCTTCTTGTTCCTAACGAATTTGAATTTTATGATTCTGCTATTTTCTAAATTATAGAAATATTAGGTTATTTGAGTAGTG TGCTTGAGAGGGATGAACTGTTTGATTATTTAAAGTGTGTTGGAAATTGATCAGAATTCTGATTTTGACTGTCTGAATAT GTCTGCTGGGTCATTGGTTAGCTGATGGGTAACTAATAATCAGTTGCCCTAGGTGTGAGGGGGCGTGTTAGAAGTCTCAC ATTGACTAGAGATTTGACATAGATAGCCTTTATAAAGGGTAGAGTAACGCTCAACTCTTGAGCTTGTTTTAGGTTGAGTT AGGCCTCCCAAATTCTAATAGAATTGGCTTGTGAACTTGCTTGCGACTACGGAGATTTACTAAATTGACAGTGCTGTTTC CTTCTCTTGTGAATTCTTGATGGTGTTCTTTAGTTATGCCCTTTTGTTATAAATTGTGTACCACAATGGTTAGGATTTAT TTTTTGGGTTTGAGACCTACGGTTTGAGCGTTAAATTAACTGAAAGAGGGTGAAACATTTGTTACGATTTCAATATTTTG AAATGATGCCTGTTCTTGTCCTGCTCTCTGCACTTGTCTAGTTGCATGCTTTTGATGAATGATTTCCAGTTTAAATACTT ATTTTCTAGGATGCAATCATTTATTGTCACTACCATTTCAGGCAGCAGAAGAGTGCACCTCAGTGCTTGAGCTTGATCAC GAGCACAGTGGAGCTTTGATGCTGCGAGCTCAAACACTGGTGACCTTGAAGGAGTACCATTCAGCACTTTTCGATGTCAA TAGACTCTTGGAATTGAATCCAGACTCAGAGGTCTATCAAAATCTTCACGCCCGCTTGAAGACACAGTTGGTAAGGCGTT ATCCCATATGTTTTCATTGCAGTTGCATAAATTGAGCAAGTTATGGGATTATGTTTGACTGATTATTGTTGTTGTTCTTG TTCCAGATAATAAATAAAAACCATATGTTAGCAATAAAGAGTTGGATTTAATGTGTGTGTGTGTGTGTGTTTGAAGTTAG TGGACAAAGAAGATAGGTTACACAAACCTTTCAAATTTGGCCAAGATTTTTTATTTCATGATTAATTTGCTTTGTGAACT TGTAATAAGAAATATTGTTTCTGTTCTTTTTTCCCCCTTGCTTAAGGAAAGTCACTTGCTCCAATACCAGAGTCAGAAGA GGAGTTTGAAGAACAAGGAGATGAGGAGGCTGAGCTGATGCTAAATAGAGATAATAAGAAGAAAGAGATGTTTGCTGCAA CTTCTAATATTAGGATTGATCAAAAGGATGAGCTTGGAAAAAGTTTTATCGGTTCTGAGTGTGCTCCTCAGGAAATAGAC CAAAATTCTTCATTTAAACAAGAAAGGGACCAAAACTATGAACCTAAAATGACCACAGTGGAAGTTACGGTTCCTAAAGC ACCAAGCAAAGAATCAACTGAGAAGCAGTCCGAAGGATGGCAAACAATTCCAAAACCTAAAGGACATTCTACTCTAGACT ACGCACGGTGGGACAATGTTGAAGATGATTCTAGTGAAGAAGAAGATGATGATGATGATGAAGATGAAGAATCTTTGCCC CAATACCGGTTTCGTGTGAAAACAGTTGGTGTGCGTCCTGTGAAGTGAGGATATTCGTATACTACGGTACCCTTAAATGG CTGGTTTGATACCATAGTGAATGTAAAAAGTGACATCGACAGGCAAGAATTGACTGAATAGAATCACTTGGTTGGTTGAA TCAGAGGGAAGTGCTGTATTTTATCCATTGGTTTGGTTGTCAATGTTCATGAATCATAGGGAACTACTGTATTTTATCCA TTGTTTTGGTTGTCAATGTTCATGAACACTAAATCAACCTGTTTCAAGCTGCTACCGTCCGATATCCAGCCGGTTTGCAT CTTGTGTGAGAAAATCTAAGTGTTCAAGTTTCGTATTGGTCCAGAAATATAGGGAGAGTTTTTATCTGATGTGGCCCATA CAACATGACCAATATCAACATGAACTATATATTGAATGGGAATTTCCTGAAGCTTAGTTACTGCAGAAAAATTGATGATA AGGTTGCAGTTGTGAGAAATCTAGTCATTCAATTGTAACAATGGACCTGTGATTTGTCCTCTCCTCTTTGTATGATTCAG AAAAATTGATGATAAGGTTGCAGTTGTGAGAAATCTAGTCATTCAATTGTAACAATGGACCTGTGATTTGTCCTCTCCTC TTTGTGCCAACGCACCACTCTAATGGTGGAAGTTAGCAGAACAAATTAGGCCTAGTTTGAGCATTAAGCAACAAGATAAA GCTTGGTTCCATTTTACACAGAAATATCTCTTTAATTTCATCTATTTTTTTCTATCACATCATTCATAATATCTCTCATT TCTCTCTATTTTATTTCAATTTCACTTGTGATTTTATACAAGTCCGCATGTGTTTTCACTTGTTCAGTTTGTTTCAAACT TTCAATTAATGCCATCATTCAAACATCTATTTTCTGCTCCTCCTCTTGATTTCATTTCCTCTGATAGGTGAAACCGTGCG AGTGTAGCAGCCGTCTTTCCAATCTGCTTGCTCTAAAACCTGTGTGACAGTAAATGTAGCAATTAATATTGGCTTGAAAT TATTATTGAAGTTCATAAATGCCCTCTTCATTTATAGCAGTAGTTTATGGTGATAACGATCATTTTTCAATTTTATATCT GGGGACTCACCAGAACTTGTGAAGTCTTTAATAGTAGGGTGCCGGATCATGTGAAATGCTGCAGCTGTACCTTGTTACAC ATTTAATAGGAACACTTTGAATCTTCATGTATATATTCCAACTAAGCCATCAATAAAGTCTTCAAACTGTAGGCATATTT CTTTAGGCCTGTTGCTCACTAGCCTACATTTTCGCTCTGCTAGTAATGCACACTGATTTCAAGCCACTTGAGTTTGTATA GTTGCTGCAAATATGACTACTTTCTCGCTTGGGACCCACAAATTGTTCCTCATTGTGATTTTCTTCATGGTCGTTTCTGT TGATTGGAGCCTTAGGGTGATCCCAAATCATGGTAAGTGAGAAATATAATGTTTTACTCTGCATAGCTTCATGCCTATTT CATACAATAGCCAGTGTTTAAAAGCCTGAAGAAATTGATTTTCAAGCTAGTTTAATGGTCAAATTTACTTGAAGAGTTTT GCCGTCCATAGCAGTCTTACCTTGCTTGAACAAGATTATCTTAGCGGAAGATAGTTGTGGTTTAAATAAAATATTATCTC TTGAAAAATTAGTTGTGACAGTGTTACTAGTCAAACAGGTTTTATTTATGAGGATTTTACATGTGCATTTTCCCCTGTTT TTCAGCTAGGTTGACAAGTTTGCAAGAAGAGAAAGCAGCAATTAGAGATCAAAAGGTTTGATAGTTTAATTATTGTAAGT TCACTCATTTGTGTGTTGGTCAAGGATGGGAATAACTAATTGTTGTATGTACCTACTTGTGATTTTGTAGGAGGAAGCAA GACAAGACAATGTGGGAATGGAACTCTACCCAACCGGCTCCACTATACCAGATTGTTCTCATGCATGTGGACCGTGCTCT CCTTGCAAGAGGGTCATGGTGAGTTTCAAGTGCACGATTGCAGAGTCTTGCCCCATGGTTTACAAATGCATCTGTAAAGG AAAATACTACCATGTACCCTCCAATCGATGACCATTAATTTTGTTTTTTATTTTGTTGATCATTGTTGTAATTCTGAAGA TGATAGTGATTTGAGTTAGACAATTTTACCATTTGGAGATGCTTAGATTGATTAGAAACACGGTTCAAAACCATGGAAGA AATTTTCATGACTCTGTTTTTTGTTGCTTGCTTGTGGTTTTTAAAATGACCCTGTCCTAAACCAGATATAAAATGAACTA AAGATGAAAGATCTATTCCTATCGAAAATAAAAACAGCTAGC
CDS sequence (LotjaGi3g1v0137700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTACTTTCTCGCTTGGGACCCACAAATTGTTCCTCATTGTGATTTTCTTCATGGTCGTTTCTGTTGATTGGAGCCT TAGGGTGATCCCAAATCATGCTAGGTTGACAAGTTTGCAAGAAGAGAAAGCAGCAATTAGAGATCAAAAGGAGGAAGCAA GACAAGACAATGTGGGAATGGAACTCTACCCAACCGGCTCCACTATACCAGATTGTTCTCATGCATGTGGACCGTGCTCT CCTTGCAAGAGGGTCATGGTGAGTTTCAAGTGCACGATTGCAGAGTCTTGCCCCATGGTTTACAAATGCATCTGTAAAGG AAAATACTACCATGTACCCTCCAATCGATGA
Protein sequence (LotjaGi3g1v0137700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTFSLGTHKLFLIVIFFMVVSVDWSLRVIPNHARLTSLQEEKAAIRDQKEEARQDNVGMELYPTGSTIPDCSHACGPCS PCKRVMVSFKCTIAESCPMVYKCICKGKYYHVPSNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
TMHMM | 5 | 27 | 23 | - | – | |
PANTHER | 9 | 114 | 106 | 1.1E-38 | – | |
PANTHER | 9 | 114 | 106 | 1.1E-38 | ||
Phobius | 12 | 30 | 19 | - | – | |
Phobius | 31 | 116 | 86 | - | – | |
Coils | 36 | 56 | 21 | - | – | |
Pfam | 65 | 112 | 48 | 2.1E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Stomatal complex development | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. |
Expression pattern of LotjaGi3g1v0137700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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