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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0172000 |
| Transcript ID | LotjaGi3g1v0172000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT3G44820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820; TrEMBL-Plants: tr|I1MS75|I1MS75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0172000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23676875..23678866) extracted from Lotus japonicus Gifu genome v1.2.
CATTTCTGTAGTACAAAATTTGATTTTATGTCAGTGGTACTGTTATGCTTTTGTTATGAAAAATTATTAGTTATACTGTA TTTGAGTTTGAGTAAGATTTTCCATGGAACTGCAGTTCCCTCTTGTATCAAAATGTGGAAAAATTGCTCGGGCACATGAA AAGTCCAAGAATACCCATGAGGAGACACTCGCAATGGTGCTGGAAGAATTTCCTGGTGGTTCGGACACTTTCTTATTTGT GGCCAAATTCTGTTATGGGTTTCGTGTGGAACTGACTGCGAAAAATGCAGTTCTGGTCCATTGCGCTGCAGAGTACCTGG AAATGACAGATGAATTTGGAGAAGATAACTTGTTGTCGAAATCAGAGAGCTTTTTCCATAAAAATATACTGCGCAACTGG AAAGATTGCATTTTGGCTCTCCAAAGTTCCGAGCCTGTTCTACCAAGAGCTGAAAGTCTTCATTTAGTGGGCAAGTGTTT AAATGCTCTATCTATGATGGCTTGTACTGACCCAAGTTTGTTTGGATGGCCCATGATGATGTACGGGAGTTTTCAGAGCC CTGGTGGAAGCATTCTTTGGAATGGTATAAACACCGGTGCTAGAATTCGGAGCGCAGAATCTGATTGGTGGTTCGAAGAC ATCTCATATCTCAGTGTGAGTTTGTTTGAGAGGCTTATTAAGACGATGCAAGCGAGAGGTATAAGACCTGAAAACCTGGC AGGTGCCATCATGTACTATTCTAGAAAGCACTTGCCCGGTCTGAGTCGGTGGCAGGGTGGCCAAGGCGGCAAAACCCGGA CAGTTGTGAGTTTCAGCTTGACGCCTGCTACTACTGTTGATCAGAGGGTTCTGTTGGAAAGCATTGAAAAGCTTCTTCCT GAAAAGAAGGGAAGATCCTTTTGTTGCTTCCTACTTGGACTTCTAAGAGTGGCTTTGATATTGAATGTCAGTCAAACTTG CAAGGATTCTTTAGAGAGGAGGATAGGGATGCAATTGGAACTGGCAACTTTAGATAGTCTTCTGATTCCTACGTATTCAG ATTCTGATGCATTATATAACACAGACTGTATTGAACATATAGTCCAGCATTTTATACGTGCAGAATCAAATTTAACTGCC TTTTCTCCTTCATCACTTGACCAGCATGCGTCGTCTCCTTCATCTGAATCATCCAAAAAAGTGGCAAAGTTGATAGATAG CTACATTGCAGAAATTGCTTCTGATGTTAATTTAAAACCAGGAAAGATACGCGCTCTTGCAGAGGGACTCCCCGAGTCAT CAAGATTATTGCACGACGGACTTTACAGGGCACTGGACATATATTTCAAGGTTTGATTTTCCTGAGCTACATTTTTACTC AATGGTTTATTGCGATCACGGATGGTTACTTTGATGACTAATTATGTTGTGATATTGTTCAGGCCCATCCTTGGCTCTCT GATAAAGAGAAGGAAGAACTATGCAACATCATTGACTACAGAAAACTCTCAATCCATGCTTGTGCCCATGCGTCGCAAAA CGACAGGTTGCCCCTCAGGGTTGTTCTTCAGGTGCTGTTCTTTGAACAGCTGAATTTGAGAACAGCATTAACTGGATGTC TCAATGCATTGGATGGTGAAATTGCTCCAGCAGCTCCTGTTCGTGCAACTGCCTTAGGTGACACGGCAGGCGAAATTGTA CAGAGGGACGGATGGGTGACCGTTTCGCGCGAAAACCAGGTTTTAAAGGTGGACATGGATCGGATGAGCTCTAGAGTTGG AGAACTTGAAGAAGAATTCAGCAAAATAAAGCTAGAAATGAAAACTGTGGCCAAATCCCACAGTTCTCAGGGTTCTCCTC GATTTTTTGGGAGGAAATTTGGGTGTAAGCTTGTTCCTAGATCTTCAGATGCTCAACCAGAATCCCTTGACCGCTCCGTG TCCACACCAAGAGCATCAGTTGAACAAGCACGTCGATCCCATAATTCGAAACACAGGGGAAGTTTTTCTTGA
CDS sequence (LotjaGi3g1v0172000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTGCAGTTCCCTCTTGTATCAAAATGTGGAAAAATTGCTCGGGCACATGAAAAGTCCAAGAATACCCATGAGGA GACACTCGCAATGGTGCTGGAAGAATTTCCTGGTGGTTCGGACACTTTCTTATTTGTGGCCAAATTCTGTTATGGGTTTC GTGTGGAACTGACTGCGAAAAATGCAGTTCTGGTCCATTGCGCTGCAGAGTACCTGGAAATGACAGATGAATTTGGAGAA GATAACTTGTTGTCGAAATCAGAGAGCTTTTTCCATAAAAATATACTGCGCAACTGGAAAGATTGCATTTTGGCTCTCCA AAGTTCCGAGCCTGTTCTACCAAGAGCTGAAAGTCTTCATTTAGTGGGCAAGTGTTTAAATGCTCTATCTATGATGGCTT GTACTGACCCAAGTTTGTTTGGATGGCCCATGATGATGTACGGGAGTTTTCAGAGCCCTGGTGGAAGCATTCTTTGGAAT GGTATAAACACCGGTGCTAGAATTCGGAGCGCAGAATCTGATTGGTGGTTCGAAGACATCTCATATCTCAGTGTGAGTTT GTTTGAGAGGCTTATTAAGACGATGCAAGCGAGAGGTATAAGACCTGAAAACCTGGCAGGTGCCATCATGTACTATTCTA GAAAGCACTTGCCCGGTCTGAGTCGGTGGCAGGGTGGCCAAGGCGGCAAAACCCGGACAGTTGTGAGTTTCAGCTTGACG CCTGCTACTACTGTTGATCAGAGGGTTCTGTTGGAAAGCATTGAAAAGCTTCTTCCTGAAAAGAAGGGAAGATCCTTTTG TTGCTTCCTACTTGGACTTCTAAGAGTGGCTTTGATATTGAATGTCAGTCAAACTTGCAAGGATTCTTTAGAGAGGAGGA TAGGGATGCAATTGGAACTGGCAACTTTAGATAGTCTTCTGATTCCTACGTATTCAGATTCTGATGCATTATATAACACA GACTGTATTGAACATATAGTCCAGCATTTTATACGTGCAGAATCAAATTTAACTGCCTTTTCTCCTTCATCACTTGACCA GCATGCGTCGTCTCCTTCATCTGAATCATCCAAAAAAGTGGCAAAGTTGATAGATAGCTACATTGCAGAAATTGCTTCTG ATGTTAATTTAAAACCAGGAAAGATACGCGCTCTTGCAGAGGGACTCCCCGAGTCATCAAGATTATTGCACGACGGACTT TACAGGGCACTGGACATATATTTCAAGGCCCATCCTTGGCTCTCTGATAAAGAGAAGGAAGAACTATGCAACATCATTGA CTACAGAAAACTCTCAATCCATGCTTGTGCCCATGCGTCGCAAAACGACAGGTTGCCCCTCAGGGTTGTTCTTCAGGTGC TGTTCTTTGAACAGCTGAATTTGAGAACAGCATTAACTGGATGTCTCAATGCATTGGATGGTGAAATTGCTCCAGCAGCT CCTGTTCGTGCAACTGCCTTAGGTGACACGGCAGGCGAAATTGTACAGAGGGACGGATGGGTGACCGTTTCGCGCGAAAA CCAGGTTTTAAAGGTGGACATGGATCGGATGAGCTCTAGAGTTGGAGAACTTGAAGAAGAATTCAGCAAAATAAAGCTAG AAATGAAAACTGTGGCCAAATCCCACAGTTCTCAGGGTTCTCCTCGATTTTTTGGGAGGAAATTTGGGTGTAAGCTTGTT CCTAGATCTTCAGATGCTCAACCAGAATCCCTTGACCGCTCCGTGTCCACACCAAGAGCATCAGTTGAACAAGCACGTCG ATCCCATAATTCGAAACACAGGGGAAGTTTTTCTTGA
Protein sequence (LotjaGi3g1v0172000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELQFPLVSKCGKIARAHEKSKNTHEETLAMVLEEFPGGSDTFLFVAKFCYGFRVELTAKNAVLVHCAAEYLEMTDEFGE DNLLSKSESFFHKNILRNWKDCILALQSSEPVLPRAESLHLVGKCLNALSMMACTDPSLFGWPMMMYGSFQSPGGSILWN GINTGARIRSAESDWWFEDISYLSVSLFERLIKTMQARGIRPENLAGAIMYYSRKHLPGLSRWQGGQGGKTRTVVSFSLT PATTVDQRVLLESIEKLLPEKKGRSFCCFLLGLLRVALILNVSQTCKDSLERRIGMQLELATLDSLLIPTYSDSDALYNT DCIEHIVQHFIRAESNLTAFSPSSLDQHASSPSSESSKKVAKLIDSYIAEIASDVNLKPGKIRALAEGLPESSRLLHDGL YRALDIYFKAHPWLSDKEKEELCNIIDYRKLSIHACAHASQNDRLPLRVVLQVLFFEQLNLRTALTGCLNALDGEIAPAA PVRATALGDTAGEIVQRDGWVTVSRENQVLKVDMDRMSSRVGELEEEFSKIKLEMKTVAKSHSSQGSPRFFGRKFGCKLV PRSSDAQPESLDRSVSTPRASVEQARRSHNSKHRGSFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 265 | 265 | - | – | |
| PANTHER | 4 | 596 | 593 | 0.0 | – | |
| PANTHER | 4 | 596 | 593 | 0.0 | ||
| CDD | 5 | 86 | 82 | 8.91263E-22 | – | |
| ProSiteProfiles | 174 | 460 | 287 | 88.27 | ||
| Pfam | 174 | 436 | 263 | 1.1E-86 | ||
| Phobius | 266 | 283 | 18 | - | – | |
| Phobius | 284 | 598 | 315 | - | – | |
| Coils | 507 | 534 | 28 | - | – | |
| MobiDBLite | 561 | 598 | 38 | - | – | |
| MobiDBLite | 567 | 584 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0172000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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