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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0207200 |
| Transcript ID | LotjaGi3g1v0207200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G22760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q1PF16|BH019_ARATH Transcription factor bHLH19; TrEMBL-Plants: tr|G7K131|G7K131_MEDTR Basic helix loop helix (BHLH) DNA-binding family protein; Found in the gene: LotjaGi3g1v0207200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30513231..30515308) extracted from Lotus japonicus Gifu genome v1.2.
GAACTTTCTTTTGTTTCAAGTTCATTGGTCCTAAGCATTCTCACTAGTCACTGAAATAGATATTGCAGCTTGCTAGCTGA ATGATGTCACCATCAGAGGAAGAATCATGGACTAGTTGGTTGTGTGACTTGGTAAATTCAACACGTTTCATGTTTGTTTT CAACTGCATGCATATTTTAATTTGTGAACAAAGCAAAACTAACTCTAGTAACTGAGTTCCCTTTTTCCTCTGTTTTCCCA GGAACTAGAGGATTGCGATTTCCTCAATGAACCCGACACAATCTGGTTAGATGAGAGTTTCCTATCTGAAGACCCTACTC CACTACAAGAGCTGAACTTGCAAACATCTTTCTCTAACGATAGCAACCACTCTTTCTCCTCAGGGGATGATGAAAACAGC TTCGAGAAGCCTTCCAAGGCACTTAAGACGGCTGACACCGCGAACTTCCCACTGCAGAATGGTGCTTCTCCCTTCTATAT TCTTTCATTTAACAATGAGAACGAAGCACCAATTTTGAACTTTGATTCGACCTTGAAGTCAAAAGACAATGCTGTGAATG TGAATGTGAATCAGCATGAGAACAGGTCTAATTTTCCCTCAAAGAGGTCCTTGAATTGTCAAAAGAAGGAACCAAAACGC AAAGTACATGAGAGGGAGAGGGTCAGATCTCCTCACCAAGCTCACGATCACATAATGGCTGAGAGAAAGAGGAGAGAAAA GATTAGCCAGCAGTTCATAGCTCTTTCAGTTCTGATTCCGGGCCTCAAAAAGGTTTCAAATTCAGAATTCTTTCTCTGCT TTTTTTTCTTCTTCTTTTTATAGGCAAATGTTAGTTGTTAGTAATGTTAGTAAGTTAGTTCCTCAGGGCTTTACCCTTCA TCGCCCTAACTCTTACAACTTGAGCTAACCCTCCGGAACAGAGTTTTTTCTCTGCTTATTAGTTAATTAAGTGGATACAT TTCCTTTTTGTACTGATTATTGAAGGGTATGTATATTATGCAGATTGATAAGGCTTCTGTGCTGGGGGACGCTATACAGT ATATGAAACAGCTCCAAGAGCAGGTGAAGCTTCAGGAAGAGCAAATCAAAAGGAAAAGCGCAGAGTCTGTGGTGTATGTT GAGAAATCTGAGTCCTCTGTGGTGGACGATGATGTCTCAAACACATCCTCAAATTCAGGCACCGCAAATAATAATGTCTC ACAGCCTGAAGTTGAGGCAAGGGTGTCAGAGAACAAAGTGTTGATCCGAATTCACTGTGATAAACAGGAGGGGGTGTTGA TGAACATACTCAAAGAGATAGATAATCTTCATCTATCTGTGATCAATAGCAGTGCCTTGCTTTTCGGGACCTCCAAATTG GACATAACCATCATAGCTGAGGTATACAATTTACTACTTCTGCTAAGAAGTATCGATGTCTTATTTTATTAGCCTATTGT CACTTTGCTCCTATATATCTTCCAAGTTTGTAACTATATACATGTATAATTTTGTTGAACCTGTTGCAAATGCAGATGGA TGAGGAGTTCAGGATGAGCGTGAAGGAACTGGCTAGAAAGCTTCGAGTGGAACTCCTGCAATTCATGTTGCATTCATTCA GTTAATCGTCTTGTCATTAGACAGCCCTCACTTTAATGCATTACATTATGAATTCAATAAAAGAAAGTAGCCACATCGAG TAATAAACAGAGTATAGTAAAATACTCTCTTGTTTTTGGTTTTTTAATATTTTATCGCCGGCAACTATAAGACTAACTTC CTTGGGTGCTTGCTAGGATACCTCAACACTTAGTTGGGGCATGATACAAGATGTGACGTGGACCAATAACATTTAAGTCA GTGTATCTTCTTTTTACCATATATGTTTTAAAATGAATAAAAAATTCAAATACACTATTAGATGTCAGTTTCCTATTGGT ACACGTCAAGTCGCGTCAGTCATGTACCATACAATGAGGGTATGGTAGAATTCACCACTTCCTTGGGGTATTTGTCACTT AAGGTCTTTGGACATGCATTAAAGAAAACAAATCATGTTCTCACTTTAAAATTTTCTATCTCATTCCTAATATATCCG
CDS sequence (LotjaGi3g1v0207200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCACCATCAGAGGAAGAATCATGGACTAGTTGGTTGTGTGACTTGGAACTAGAGGATTGCGATTTCCTCAATGA ACCCGACACAATCTGGTTAGATGAGAGTTTCCTATCTGAAGACCCTACTCCACTACAAGAGCTGAACTTGCAAACATCTT TCTCTAACGATAGCAACCACTCTTTCTCCTCAGGGGATGATGAAAACAGCTTCGAGAAGCCTTCCAAGGCACTTAAGACG GCTGACACCGCGAACTTCCCACTGCAGAATGGTGCTTCTCCCTTCTATATTCTTTCATTTAACAATGAGAACGAAGCACC AATTTTGAACTTTGATTCGACCTTGAAGTCAAAAGACAATGCTGTGAATGTGAATGTGAATCAGCATGAGAACAGGTCTA ATTTTCCCTCAAAGAGGTCCTTGAATTGTCAAAAGAAGGAACCAAAACGCAAAGTACATGAGAGGGAGAGGGTCAGATCT CCTCACCAAGCTCACGATCACATAATGGCTGAGAGAAAGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCTCTTTCAGT TCTGATTCCGGGCCTCAAAAAGATTGATAAGGCTTCTGTGCTGGGGGACGCTATACAGTATATGAAACAGCTCCAAGAGC AGGTGAAGCTTCAGGAAGAGCAAATCAAAAGGAAAAGCGCAGAGTCTGTGGTGTATGTTGAGAAATCTGAGTCCTCTGTG GTGGACGATGATGTCTCAAACACATCCTCAAATTCAGGCACCGCAAATAATAATGTCTCACAGCCTGAAGTTGAGGCAAG GGTGTCAGAGAACAAAGTGTTGATCCGAATTCACTGTGATAAACAGGAGGGGGTGTTGATGAACATACTCAAAGAGATAG ATAATCTTCATCTATCTGTGATCAATAGCAGTGCCTTGCTTTTCGGGACCTCCAAATTGGACATAACCATCATAGCTGAG ATGGATGAGGAGTTCAGGATGAGCGTGAAGGAACTGGCTAGAAAGCTTCGAGTGGAACTCCTGCAATTCATGTTGCATTC ATTCAGTTAA
Protein sequence (LotjaGi3g1v0207200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSPSEEESWTSWLCDLELEDCDFLNEPDTIWLDESFLSEDPTPLQELNLQTSFSNDSNHSFSSGDDENSFEKPSKALKT ADTANFPLQNGASPFYILSFNNENEAPILNFDSTLKSKDNAVNVNVNQHENRSNFPSKRSLNCQKKEPKRKVHERERVRS PHQAHDHIMAERKRREKISQQFIALSVLIPGLKKIDKASVLGDAIQYMKQLQEQVKLQEEQIKRKSAESVVYVEKSESSV VDDDVSNTSSNSGTANNNVSQPEVEARVSENKVLIRIHCDKQEGVLMNILKEIDNLHLSVINSSALLFGTSKLDITIIAE MDEEFRMSVKELARKLRVELLQFMLHSFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 340 | 336 | 9.0E-113 | – | |
| PANTHER | 5 | 340 | 336 | 9.0E-113 | – | |
| MobiDBLite | 53 | 74 | 22 | - | – | |
| Gene3D | 152 | 227 | 76 | 4.2E-16 | ||
| ProSiteProfiles | 162 | 211 | 50 | 14.805 | ||
| SUPERFAMILY | 166 | 228 | 63 | 2.09E-16 | ||
| CDD | 167 | 216 | 50 | 3.4879E-11 | ||
| Pfam | 167 | 212 | 46 | 6.1E-10 | ||
| SMART | 168 | 217 | 50 | 1.3E-13 | ||
| Coils | 201 | 228 | 28 | - | – | |
| MobiDBLite | 241 | 262 | 22 | - | – | |
| MobiDBLite | 242 | 262 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0207200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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