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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0217100 |
| Transcript ID | LotjaGi3g1v0217100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF674 family protein; TAIR: AT5G01120.1 hypothetical protein (DUF674); Swiss-Prot: sp|Q92BV3|MUTS_LISIN DNA mismatch repair protein MutS; TrEMBL-Plants: tr|I1J759|I1J759_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0217100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32685959..32688760) extracted from Lotus japonicus Gifu genome v1.2.
TAGCCAATGGGCCTTATCTACTAAGAGTACTTAAAAGAAATAACATTGGACTAAGCCCAATATATGGGCATTCTCTGTAG GTTTTTATTTCCAAGCTATAAGTATTGTACTGTTCTTTATTTTACAGTTATCAAAGAAAACGGCTTCAGCCAAATTTACT TGCCTTTATCGTAATTTTTCTTCTTGCTGCTAGGTTAGCTCTGCTAGGGTTCTTGGTGAGATTCTTGAGTCTTACCATTC TTCCCCTTTTGTTTTTTTTTTTAATTCTGCATGGCTTCTAAGCAAGAACCAAATTTCCCTCTGAGACTGTTGGTGGACAA AGAAAGAAACTGTATAGTTCTAGCTGAAGCAAACCGTGACTTCGTAGACATTTTGTTCAGCTTTCTCACCCTTCCATTGG GAACTCTCATTCGCCTTGTCTCAAAGAAGAAGCTACATCATCCATCAGATGAGATTGGTTGCACCAACAATCTGTACCAA AGTGTTGAAAATTTTGGTTCTGAGGTTTTCTGGAACCATATCTGCAAGACAATGTTGCTTTCTCCGCGCAATCCTTGTGA GGCCCTTTGCCAGAAGCTGAAGCTGAAGATTGATGATGCAGAGCCCACTAAGTACTTCATGTGTGGTAGTTGTCGTGTGG GGAGTGATGTGTTGTTGAGTACTTTTTTAGGGGCGAGTTGTTGTTCATGTGGGGAATTGATGGACAAAGAAATGAAGCTG CATGGGGATTCAACTGAAGAGAATCATGGTCATGGAGGTGGTGTTTTTGTTAAGGCGGAAACTATGTATTTAATCTTTGA TGATTTGAAAGTGGTTCAAAGTTCTCCTGGAAACTCTGTTCGGCATCTTCTTCAACTTGGCTACAAGAACTTCCACAAGC TGATAGAAATGTCTCCAAGTGTTGGCATGAGTGAGGTAATATTTCTTTTGATTCATTTGACATGCTAAAGATGGTTTATT ACGATAGGAAGCAATTTTATACCAAACAAAACCACTAGTATCTAAATAAGGGAACACAATATTTATCCTAACATACATCT TCCCAGAATTAAGGTTTGCCATACATGTGACAACGTCTAAGAAACAGAACATTTTTGAATAGAAATAAAAGGAATAACAT AACATTCAAAAGATAAATATATACAGGTCACATGGACTAAATAGGCCACCACAGTCTATAGCATACCTCCGGGACCATAG GTCAATTGCATATGCACTTACAGGTCGCCCATCAACATAGTCCTCACATGGACAACGAGAATCAAACACACAACATTTCG AGGGGAAATGGTCTGTCATTACTCATTACCAACGGAAGTTAACATGTGTTTGATAAAATAAGAGTTTTATGAAAACAGTA TTATAAACCTTAGGTTCTTGTTTGAAAGATCATTGAAAACAATATAAGAAATTAAATATGAAAGTTTCCTTGATTGATAA CTATTGTGCCTATACCTCTATTTTTCTTTTCAGATTCTAGACTTGCTAAAGCAAGCATTAACCTCCAAATCTCCTCTCAG TGATGTATTCTTGGCAAATGAAGAATCTAAGAAAATGACCACTTTCTCACCAAAACTTGGACCCAAAATTGTAAAGTGCA TTCATAACTCTGTTATAAACCTTAAGGTAACCGTGGGAAAATCAAGGAAGAAGATACTGTACGCTGAAACTGAGGGAGAT TTTGTTGACTTTCTATTCAGTTTCCTCACAACACCTCTAGGGTCAATTCTAAAGCTATTGAATGGAAATTGTTCTATGGG ATGTGTGGATAACTTGTACAAAAGTGTGAAGGATCTGAAGGATCTCAATCCTTCATTGTTCACAAGACCTCCAGGCACTG ATCCGTTATTGGATCCACCGGTTGCTTCTCAATTTGGTTGTTGGAGGCAACCACTAAACCTTTTTGAAGATGAAACTCCT AGTTACTGGTATGGCACTGGTGTGATTAAAAATAATATCTGCTATACAAGCAAGAATGGAGTAATTTCAAAGAAGAAAAA TCTGATCCACAATCCAGTAGACATGAAACTTTTTGAGCCAAGGTCCCCTGATGGCACAAGAGAATTCGCTGAGGGATTTG TGAGGAGGCCATCACTATTTGTTGTGTGGGATGATCTTCAAGTTACACATTTAGCAAAAACATCTAGCATTTCATTTCTG CAAAAGCTGAATGTACCATTGGATGATTTAGAGGAGCATGTAGTGAGCATTGGGGAGACAGAGGTAACTCTCCATTTTTC ACTAATTTTAATTATCTTATGAATCAAATCAAATACTTGAAAATTTAATGATTGACAATAAGTTTAATGAGAATTAGATG ACTAATTTCATTGTGTTAACATTATCAGGGACTAAACTTGTTGGGAGCTTCTTTGACATCCAAAGCTGCTTTGACAGATG GCCTGTTTTACCTCCTGAAGAAGCCAAAGGAAGAATCTACAGCTTGAAGTTTTTTTTAGATGTTGATAAGGGGCTGAATA ATAGAGCAATCCTGCAAATGTTTGATTTCAGACATATGTGCTACATTTGAGTGAACTGAAATGTATGGTGATGTGATTTT TAAACTCCCTTGTTAAACAATCAGTTTGTGTGCTATGTAAGTGCTATTAGGATTTAGGACAACACAGTCTTGAAATTGAT TGTTGCTCATGAGATGAATTGAGAAATCTGGTTAAGGAATTGAAATTTCAGGTGGTGTTGTTGCCTTGTTGGGATTACAA AGAAAAAAGTTAATGATAAGAAGAAGAAAAAAGCATAAGGGCATGATTTCAAAGTACTGCATGAACACAACAACCAGTAA GT
CDS sequence (LotjaGi3g1v0217100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTAAGCAAGAACCAAATTTCCCTCTGAGACTGTTGGTGGACAAAGAAAGAAACTGTATAGTTCTAGCTGAAGC AAACCGTGACTTCGTAGACATTTTGTTCAGCTTTCTCACCCTTCCATTGGGAACTCTCATTCGCCTTGTCTCAAAGAAGA AGCTACATCATCCATCAGATGAGATTGGTTGCACCAACAATCTGTACCAAAGTGTTGAAAATTTTGGTTCTGAGGTTTTC TGGAACCATATCTGCAAGACAATGTTGCTTTCTCCGCGCAATCCTTGTGAGGCCCTTTGCCAGAAGCTGAAGCTGAAGAT TGATGATGCAGAGCCCACTAAGTACTTCATGTGTGGTAGTTGTCGTGTGGGGAGTGATGTGTTGTTGAGTACTTTTTTAG GGGCGAGTTGTTGTTCATGTGGGGAATTGATGGACAAAGAAATGAAGCTGCATGGGGATTCAACTGAAGAGAATCATGGT CATGGAGGTGGTGTTTTTGTTAAGGCGGAAACTATGTATTTAATCTTTGATGATTTGAAAGTGGTTCAAAGTTCTCCTGG AAACTCTGTTCGGCATCTTCTTCAACTTGGCTACAAGAACTTCCACAAGCTGATAGAAATGTCTCCAAGTGTTGGCATGA GTGAGATTCTAGACTTGCTAAAGCAAGCATTAACCTCCAAATCTCCTCTCAGTGATGTATTCTTGGCAAATGAAGAATCT AAGAAAATGACCACTTTCTCACCAAAACTTGGACCCAAAATTGTAAAGTGCATTCATAACTCTGTTATAAACCTTAAGGT AACCGTGGGAAAATCAAGGAAGAAGATACTGTACGCTGAAACTGAGGGAGATTTTGTTGACTTTCTATTCAGTTTCCTCA CAACACCTCTAGGGTCAATTCTAAAGCTATTGAATGGAAATTGTTCTATGGGATGTGTGGATAACTTGTACAAAAGTGTG AAGGATCTGAAGGATCTCAATCCTTCATTGTTCACAAGACCTCCAGGCACTGATCCGTTATTGGATCCACCGGTTGCTTC TCAATTTGGTTGTTGGAGGCAACCACTAAACCTTTTTGAAGATGAAACTCCTAGTTACTGGTATGGCACTGGTGTGATTA AAAATAATATCTGCTATACAAGCAAGAATGGAGTAATTTCAAAGAAGAAAAATCTGATCCACAATCCAGTAGACATGAAA CTTTTTGAGCCAAGGTCCCCTGATGGCACAAGAGAATTCGCTGAGGGATTTGTGAGGAGGCCATCACTATTTGTTGTGTG GGATGATCTTCAAGTTACACATTTAGCAAAAACATCTAGCATTTCATTTCTGCAAAAGCTGAATGTACCATTGGATGATT TAGAGGAGCATGTAGTGAGCATTGGGGAGACAGAGGGACTAAACTTGTTGGGAGCTTCTTTGACATCCAAAGCTGCTTTG ACAGATGGCCTGTTTTACCTCCTGAAGAAGCCAAAGGAAGAATCTACAGCTTGA
Protein sequence (LotjaGi3g1v0217100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKQEPNFPLRLLVDKERNCIVLAEANRDFVDILFSFLTLPLGTLIRLVSKKKLHHPSDEIGCTNNLYQSVENFGSEVF WNHICKTMLLSPRNPCEALCQKLKLKIDDAEPTKYFMCGSCRVGSDVLLSTFLGASCCSCGELMDKEMKLHGDSTEENHG HGGGVFVKAETMYLIFDDLKVVQSSPGNSVRHLLQLGYKNFHKLIEMSPSVGMSEILDLLKQALTSKSPLSDVFLANEES KKMTTFSPKLGPKIVKCIHNSVINLKVTVGKSRKKILYAETEGDFVDFLFSFLTTPLGSILKLLNGNCSMGCVDNLYKSV KDLKDLNPSLFTRPPGTDPLLDPPVASQFGCWRQPLNLFEDETPSYWYGTGVIKNNICYTSKNGVISKKKNLIHNPVDMK LFEPRSPDGTREFAEGFVRRPSLFVVWDDLQVTHLAKTSSISFLQKLNVPLDDLEEHVVSIGETEGLNLLGASLTSKAAL TDGLFYLLKKPKEESTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 240 | 238 | 2.9E-113 | – | |
| PANTHER | 3 | 240 | 238 | 2.9E-113 | ||
| Pfam | 5 | 463 | 459 | 2.1E-151 | ||
| PANTHER | 262 | 491 | 230 | 2.9E-113 | – | |
| PANTHER | 262 | 491 | 230 | 2.9E-113 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0217100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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