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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0226900 |
| Transcript ID | LotjaGi3g1v0226900.3 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isochorismate synthase; TAIR: AT1G18870.1 isochorismate synthase 2; Swiss-Prot: sp|Q9M9V6|ICS2_ARATH Isochorismate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0S3SWP9|A0A0S3SWP9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0226900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:35116521..35120361) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTACAATAACTATTGCCTGGGACAATGCTCTTTCTTGGTCATGGGAAACTGCAATCAATGAACTCCGAGCCACAGT TTGCAAAGTGAGTGCAAAGAAACTATGCCTTTTAAATTATAAAGCTAGAGATTTTGTAAAAGCCCTCCTTTGCTTCAGGT TTCTTCTTCCATTGTTAAGTCTCCAAAACAAGCTCCTCCAACATTAATATTAAGCAGCCATAACATTCCCAGCAAAGTAG ATTGGGATCTTGCTGTTAACAGAGCTTTGCAGATGATAGAGCAAGAAGATTCCTTGCTAACCAAGGTAACCTTTATCTCA TGCTTGCTTGTTACTTTTGTCCAATTTTTTTCCTTTCCCTTTCTTTTCTCTGCTTTTGCATCAAAACTTGTGCTGCAAGA ATCCATTTGAAAGTCCGTTTCTTTTGCCATAATGGAAATGTAGGTTGTGCTAGCTCGTAGCACCAGAGTTGTGCCTACTG CTGATATTGATCCTCTAATGTGGTTAGCTTGCTTAAAGGTGTTGTGCTTCTCTTTTCTCTTGTCACTTACAAATTGAATA GATTATCTTCATAATATGTAGTAGCATAATACTTATGTCCCTATTGAAACTATTACAGGTTGAAGGTGGGAATGCTTATC AATTTTTCCTTCAGCCGCCTAATGCACCAGCATTTATCGGAAACACAGTAAGTATGATGTCTGACTATAAACTAGGAAGG TTTATATAGTCTTTCCCTCATATCATTGTTTACGATGTCATGATGTTTTGCTAAACGTTCTACAAAATATATAAATTTCA CATAATAACTTCAGTTACTTTTTTATTATTATTAAACTCATCTCAATAGCTTAATGTATACTTTAAAAGTCATTACGTGG ATAACCTCTTTGAGAACTGTTTTTCTGAATTGAATCAGCAATGATAAATTTTTCTCCTGTGTTTCCATTTTAATTTTATG AACTTGATGAATAGCCAGAGCAACTATTTCACAGAAAACGGCTCCACATTACTAGCGAGGCTTTGGCTGGAACCCGTGCT AGAGGAGTATCTCTAGCACTAGACCGTCAAATTGAACTTGATTTACTTACCAGGTTTACCTTGCTCCTTGGATCTTTGAT GTTAACCTTTGTTATATATTTGCTTTCTTTTACGCTTGTGATTTCTTTGTTTACATTTGTTTCTAGCTTCTAAACTCTTG TTGTTTTGAGTTTTTTCACAGTCCAAAGGATGACATTGAGTTTACGATAGTGAGAGATACCATAAGAAGAAAATTAGAGG TAAGCTTAGTTCTGTCATATTGATTGCTTATCTGTCACAGAAGTTACTCTGGAATATATGCTTGATTTTGTTTCTAAATG AATTTGTCCTTGAATCCATTGATATTCATAGTCATAGGTCTAGAGAGCAAGAGATGAAGGAAAAAAAAAATATTTTAATA AAATGATCATTGCTTGTATGATGTGAACTTTAAAAATCTGGTGTTGATATCTTTAGCCTCATGTTGCTGGTGTAAAAAAT CTGAGAGTCAAAAGGATTTTATCTGTTTCTCTAACTAAAACCTTGAAGGTAAGTTGTCCTTGATACGACAATAAGGAAAA ATAGATTAAAAGGCTGGACTGTATAATGCCACACTCAGTTTGCTGTTTCAATTTGCATATAACTATTGCATCTCCTTGGA GCCATTTAAGAACTTCCTTGGTTAAGTTGAGGATAAACCATCTATCACAGGGATGTGTTTTGGCAGGCAGTATGCGAGAA CGTTGCAATCAAGCCGAAGAAAATGATAAGGAAACTACCCAGGATCCAACATTTATTTGCTCAACTAGTCGGCAAGTTAA GAAGTGAAGAAGATGAGGTAACTATAATATAGAGTGCAAATACTTGAGTTTCGTCAGGCATGCATTAAGTGGCTCTAACT TTGAATTCTTTACGGTTAATTTTAGTTTGAAATTTTGTCATCACTGCACCCAAGTCCAGCAGTTTGTGGGTTTCCAACAG AAGAGGCACAACTTTTAATTGCAGAAACAGGTACTTCTACTTTCAGTACACTATTGTTTCTAAAGCAGTCAAATCTTTCT GTTTTTCAAAGAACTTTTAGCTTAAGCAATATAAATGGAATGATAGTCATATAGCATGCAATATTCTTTTACTCTATTTG TAGAAATTGAAATGGGAACATAGTTTGTACTAAGGCCTGAACTCCATGCAATAACTGCAAATCTAGGGGATTGGAATGTT ATTGTGGCACAGTGTGATGATGATAACAGAGAAGAGTTAGTCATACAATATGCGATATATCACTGATTTAGCAAAATTCA TGATTGTGATACTAGTTATGATTGGGAGTGTTACAATATCAGCATCTACTTCGTTGCAAAGCTCTTCAAGTGTTGCTTTT ATTTATCCAATTTTGGAATATTAATATGTAAAAGAATCATTTTAGAACACACTGGGTAGTGAAAATAACTAAATTATTCT CATGATGTTTCAAATTTGGTTAACAAAGTTATGACTTCAATTCACTTGGATAAAATTTGGTTACTTTCAAACACAATTTT CAGAAGTATTTGATCGAGGGATGTACGCTGGACCTGTTGGTTGGTTTGGTGGAGGAGAGAGTGAGTTTGCTGTTGGCATC AGGTCAGCATTGGTGGAAAAGGTTAGCTACATAATTCAAGTTTGTTTTTTTTCTTGAATGACATATTTAGTTTGGGTTGG TTGGAATCTTAAGAAAATTTTAATGATAATCCAAAATGGTTCTAATTTCTAGCATTCTACTAAATTAGGGAAGAAAAAAC TGATAAATTTATTGTTAAGCTAGAGTAAGAGCACTTGATTTGGTTTAGAGTAATAAGCCCTGTTTGGAAGAGCTTATTTG AGCCTTTCTTATGGCATAAACACTTATGAAAGTGTTTGAGAGAGCTTATGTAAATAGCTTATGACCTACATATAAGCTGT TTTGAGCTTATTTTCATAAGCTATTCAGATTAGCTTATGAATAAGAGCTTGTGCTTATCCATAACCTATTTTTCAGCTTA TTCAATAAGTTTCTCAAATTAGCTTATGAATAAGTGCTTATGTGATAAACACTTATTTCCTTAAGTGTTAAATTGTTCTC TTTACCCAAACGCACCCTAAGTATCATTTGCATGTCATGTTCTAAGCAGATTTCTCCCTAAGTTTGAGGAGCAGTTTGTA TAGTTGAAGACAGTTTTTCCTTTTGTCCGTCTTGTAAAATTGGGAAAAATAGACTCTGAAAAATTCCCATGAATTTCAGA AATCTCATAGCTACACACACATTTGAATGTTTAAAAGTAGCCACATAGAAGCTTAGTCAACCAACAAGGTGCTGGTCTAG TAGTAAGCAAGCTAGACGTTGTAAGGATGAGAGGATAAGTTCAAATCCTGGGAAAGACATTTGTTGGGATGGACATGCAA CCGTTTCCCGAACGGGTGGCGACATTTGTCAAAGATAAAAAAAATAAAAAATAGAAGCTTAGTCAAGTGTTTTTTCCACT AATTATAACATTTGCAAGTTTTTGTTATAGGATCTAGGTGCACTGATATATGCTGGAACAGGGATAGTGGAAGGAAGCAA ACCTTACCTGGAGTGGGATGAGCTAGAGCTCAAAACATCTCAGGTATATTTGAACATGCCATCTTGTGCAAAACAATTCT AAACAGTTTGTTGCTTGACATGATTTATGAGCATCATTTATCTGATCTTGTAGCTCATGGATACTAAGTGGATGTTGATT TGTTTTGTAGTTTACCAAGTTGCTCAAACTTGACTTGCCTCTGAGACAAAAAGTAGATGTAAAATGAGCTCCATCAACTA A
CDS sequence (LotjaGi3g1v0226900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTACAATAACTATTGCCTGGGACAATGCTCTTTCTTGGTCATGGGAAACTGCAATCAATGAACTCCGAGCCACAGT TTGCAAAGTTTCTTCTTCCATTGTTAAGTCTCCAAAACAAGCTCCTCCAACATTAATATTAAGCAGCCATAACATTCCCA GCAAAGTAGATTGGGATCTTGCTGTTAACAGAGCTTTGCAGATGATAGAGCAAGAAGATTCCTTGCTAACCAAGGTTGTG CTAGCTCGTAGCACCAGAGTTGTGCCTACTGCTGATATTGATCCTCTAATGTGGTTAGCTTGCTTAAAGGTTGAAGGTGG GAATGCTTATCAATTTTTCCTTCAGCCGCCTAATGCACCAGCATTTATCGGAAACACACCAGAGCAACTATTTCACAGAA AACGGCTCCACATTACTAGCGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGTATCTCTAGCACTAGACCGTCAAATTGAA CTTGATTTACTTACCAGTCCAAAGGATGACATTGAGTTTACGATAGTGAGAGATACCATAAGAAGAAAATTAGAGGCAGT ATGCGAGAACGTTGCAATCAAGCCGAAGAAAATGATAAGGAAACTACCCAGGATCCAACATTTATTTGCTCAACTAGTCG GCAAGTTAAGAAGTGAAGAAGATGAGTTTGAAATTTTGTCATCACTGCACCCAAGTCCAGCAGTTTGTGGGTTTCCAACA GAAGAGGCACAACTTTTAATTGCAGAAACAGAAGTATTTGATCGAGGGATGTACGCTGGACCTGTTGGTTGGTTTGGTGG AGGAGAGAGTGAGTTTGCTGTTGGCATCAGGTCAGCATTGGTGGAAAAGGATCTAGGTGCACTGATATATGCTGGAACAG GGATAGTGGAAGGAAGCAAACCTTACCTGGAGTGGGATGAGCTAGAGCTCAAAACATCTCAGTTTACCAAGTTGCTCAAA CTTGACTTGCCTCTGAGACAAAAAGTAGATGTAAAATGA
Protein sequence (LotjaGi3g1v0226900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTITIAWDNALSWSWETAINELRATVCKVSSSIVKSPKQAPPTLILSSHNIPSKVDWDLAVNRALQMIEQEDSLLTKVV LARSTRVVPTADIDPLMWLACLKVEGGNAYQFFLQPPNAPAFIGNTPEQLFHRKRLHITSEALAGTRARGVSLALDRQIE LDLLTSPKDDIEFTIVRDTIRRKLEAVCENVAIKPKKMIRKLPRIQHLFAQLVGKLRSEEDEFEILSSLHPSPAVCGFPT EEAQLLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKDLGALIYAGTGIVEGSKPYLEWDELELKTSQFTKLLK LDLPLRQKVDVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 330 | 330 | 3.7E-184 | – | |
| PANTHER | 1 | 330 | 330 | 3.7E-184 | – | |
| Gene3D | 1 | 322 | 322 | 1.0E-87 | ||
| SUPERFAMILY | 4 | 319 | 316 | 1.02E-74 | ||
| TIGRFAM | 11 | 318 | 308 | 2.3E-91 | ||
| Pfam | 56 | 311 | 256 | 1.3E-56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Isochorismate synthase activity | Catalysis of the reaction: chorismate = isochorismate. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. |
Expression pattern of LotjaGi3g1v0226900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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