Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0283700 |
| Transcript ID | LotjaGi3g1v0283700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Triosephosphate isomerase; TAIR: AT3G55440.1 triosephosphate isomerase; Swiss-Prot: sp|P21820|TPIS_COPJA Triosephosphate isomerase, cytosolic; TrEMBL-Plants: tr|I3SUT5|I3SUT5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0283700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57082614..57085592) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTGCTCAAAGCAATTATTCGGTTGAATTTATTGTAATTGGTTTGGTAGATCTGTTTTTTTTTCCATGGATCTGTACT TGTTGTTCGCGTTATGGAAGTAATTAGATTTACTCTGCGTTTTGGATATCTGTTCAAGTGATGCATGTAAGTAACTGATG ATTTGAATTGTCTTTTTTGCAGAATGGTACCACTGAACAGGTGAAGAAGATTGTTGGTACTTTGAACGAGGCTAAAGTCC CTGGAGAAGATATTGTGGGTGAGTCTTAACAAGCTTTCTGATGGGTTTAATTTATCTTTTTCATGCTCTGATTAGCTCAC TCTTGGTAATAGTAGCCTATCAAATGGGTTTAATATTGAGGTTCCTCTAGAACTACTCAGTAGCTGCTTCTGAGGTTGCT AACAATTTGATAGTATAAGTTATAAAGTTATGCCCAAATAGATAATTTTTAGAAGAAATGCAAATGCAAAATACCAATTA CATATAATACACGAGCATCGGACACCATCCTATACCGCCAAAGTATTTAAGTCCATTAGAAATTTCAAAACTGAAGAGGT AGCCCTTCTAAGTTTTGAGCTGTTAACACTTAAATTAGGAAAATGCATTATGTCCCGAACTGAAGCCAATGAATCCACAT GGCCATGTATTCCAAATTTTTTCCTTCTCACTCCTATGACTACGTGTAGGTTCCCTTTTGTGCGATTGGCCATAAACTTT ATTTGCGAGTTTTGTTGAAAATTTATTCGGGACAAATAGCAATGTTCCTTAAATTATTTGCCAGACAGAATGACGTTTCA GATTCTGGTGTACTATACCATATGTATTGTGCATCTGCATTTATTCTAAAAATATTTGCATATCTATTCGGGTTTTAACG TAATATCAAGTTGTTAGCAATCTCTGTATCTATGAATTATTATTGTATTTCCATTATTTTATTTAGTGCATTTCATCCAA GTTTTATTGTCTTGTTGATGATGATGTTGACATATGCTAATAAACGGTTCCTTTTTTACAGAGGTTGTTGTGAGCCCTCC TTTTGTGTTCCTATCATTTGTAAAAGCTTTACTCCGATCTGACTTCCATGTTGCTGCTCAAAACTGTTGGGTTCACAAAG GTGGTGCTTATACCGGGGAGGTTAGGTATGCTATATTTATGTTCTCCAAGTGATTTCATTTTGGTGCTTTCCATTTTGTT TGTATTGCTCATGACTTCCAGTAGTATGTTTAGAAAACTAGGCTTTTCCCATTTTCTCCAATTAGGATGCTAAAATCAAT GGAGAATCACACTTTTCTTTGAAAAATGTGAAAGGGGGGCTCAATAGCTCTGCCAGATGAGATGTTCTTTTACTCTTTTT TCGCAACTACAAACACACTCGCCAGGGTTTTAATTTTTATTTCTTTTCTGTGTTTTATTAATAGTGAAGTGCATCTTACC CTTCATTTAATCCCTATGAATTATGTCTTTTGCATTAACAGTGCTGAAATGCTTGTGAATTTGGACATTCCATGGGTTAT TCTCGGTCACTCTGAACGAAGAGCGCTCTTAAAAGAATCAAGTGAGGTACAAATTGTCCAATTGCCTTTGGTTTATATTT TAAAAATTTCCTCTGTTGATTGTATGATGATTCTACTTTGTGTAGTTACTTGTATACTTGTATTAGCAATATTTTAAATT TTCCGATTGATATTTGCCCATTTTCCCTGCATTGTCTATTACAGTTTGTGGCTGATAAAGTAGCATATGCACTTTCACAA AATCTGAAAGTTATTGCTTGCATTGGGGAGACTCTTGAACAGCGTGAAGCTGGTACAACATTGGCTGTTGTTTCTGAGCA AACAAAAGCAATTGCAGGTACATTTCCCTCCATTCATCTGAATATTGTATATTCATGAAAAAATATTTCTCACATATTAT ATTGAATTACTTACAGTTCTGGTTAAAAAGCAATTTCCAATTGCATTAAATGATTGTCATTATTTCATCGCTTGCTATTT TGCTGGTAATCAATTTTTGTACTGACCTCAATACTGTTTGCAGCTAAAATATCAAATTGGGATAATGTTGTTTTGGCCTA TGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCACAAGAGGTAGGCGCTTACTCGCTTACCT TTATTTCATATATAACATTATTCTTTCAATGAAAATTTATTTGCCACTATCTTTTTGTAAAAAAACAAAGAAATCACTGT TTTCTTATCTTTGCTCTTGTGCCAAATTAGACAGTTGACAATCTCCTCTTGTGTGTGGAAGTAACCTTTCTTGATACTAT TTGTCGGTTGTTTGGCGTAGGTCCATGCTGATTTGAGGAAATGGATTCATGACAACGTGAGTGCTGAAGTTGCTTCGACT GTGAGAATTATCTATGGAGGTACTTCCCTTCGTACTTTACTCTGTATCGATGTATCAATGCAGTTCCTTAGATGTGAAAG AAAAAGCATGTTGTGATTTATAATATATTAGAGAAAGCTGAGGTGAAGCAAATGAGGTGACGTTCACTATGGACAACCAC AAACAAGTTTGTTATAACTTTGAGTTTGGTCCATTAGAGGATGCTCTGGCATCTTTCTTATATGTAATTTTGTATTATTT GTATAATATTCGGAGGTGTTATGTTGTCTATTCCCCTGGTCCTTGGAGGTTTCTGATTGGTATATCAAGATGAGTTGACC GTCACATTAGTAATTTCTTATTAAAGTACCAAATATTTACTGCAGGTTCTGTAAATGGAGCAAACAGCAAAGAATTGGCA GGACAGGCTGATGTTGATGGATTTTTGGTTGGCGGTGCTTCCTTGAAGGTGATTTTTCTTTAGCCATTATTTTGGTTGTG TTCTGTTTCTTGCTTTGCATTTATGAAACTGACTTCTGCACTTTCTGAAATTAGCCGGAGTTCATCGACATCATCAACGC CGCCACCGTGAAGAACTGA
CDS sequence (LotjaGi3g1v0283700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTGAATTTGGACATTCCATGGGTTATTCTCGGTCACTCTGAACGAAGAGCGCTCTTAAAAGAATCAAGTGAGTT TGTGGCTGATAAAGTAGCATATGCACTTTCACAAAATCTGAAAGTTATTGCTTGCATTGGGGAGACTCTTGAACAGCGTG AAGCTGGTACAACATTGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGCTAAAATATCAAATTGGGATAATGTTGTT TTGGCCTATGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCACAAGAGGTCCATGCTGATTT GAGGAAATGGATTCATGACAACGTGAGTGCTGAAGTTGCTTCGACTGTGAGAATTATCTATGGAGGTTCTGTAAATGGAG CAAACAGCAAAGAATTGGCAGGACAGGCTGATGTTGATGGATTTTTGGTTGGCGGTGCTTCCTTGAAGCCGGAGTTCATC GACATCATCAACGCCGCCACCGTGAAGAACTGA
Protein sequence (LotjaGi3g1v0283700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVNLDIPWVILGHSERRALLKESSEFVADKVAYALSQNLKVIACIGETLEQREAGTTLAVVSEQTKAIAAKISNWDNVV LAYEPVWAIGTGKVATPAQAQEVHADLRKWIHDNVSAEVASTVRIIYGGSVNGANSKELAGQADVDGFLVGGASLKPEFI DIINAATVKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 169 | 169 | 1.6E-95 | – | |
| CDD | 1 | 164 | 164 | 1.00286E-87 | ||
| ProSiteProfiles | 1 | 165 | 165 | 58.576 | ||
| PANTHER | 1 | 169 | 169 | 1.6E-95 | ||
| TIGRFAM | 1 | 158 | 158 | 2.7E-60 | ||
| Pfam | 1 | 163 | 163 | 6.6E-64 | ||
| Gene3D | 1 | 170 | 170 | 1.1E-73 | ||
| SUPERFAMILY | 1 | 165 | 165 | 1.2E-65 | ||
| ProSitePatterns | 82 | 92 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Triose-phosphate isomerase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate. |
Expression pattern of LotjaGi3g1v0283700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…