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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0293800 |
| Transcript ID | LotjaGi3g1v0293800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G31510.1 IBR domain-containing protein; Swiss-Prot: sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7; TrEMBL-Plants: tr|A0A0L9UNK9|A0A0L9UNK9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0293800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:60055142..60056310) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTCCGAGGATGATATGCACGACGCCAACGATGTCGAGTCCCTCGACGACGATTTCTACAGTGGCGAAACCGACGA TAATGCTCCCATGGATTACTACAGCGACTACGACGACGACGCCGATGATTACTTCGACGACGCCGACGATTCCGACCGGA TTCAGTCTCGCCGCCCCGAGGTAGTCGACTCTCTTCGATTCTCATCGCTTTTCTTGTTCAATTTTGTTTTTGAGCTGTCA ATGGTGCCTGTTAATTGGATTCTTGTAATGGAGGCTTTTGTACTGATTTTGAAGCTTTGAGTTCTTGCTTTTTAGCAATA TAGGAACTATATTTGAATATTGGTAGGACATAGTATATGCTTAACTGATCCTGATGAAAAGAATTTTTTTTGGAACTAGT TGATTTATTTATATATAGAGAGGTTGGTTTGATGGGTGGAGATTGTTTGGTAATAGGGTTTTCCATTGGTGTTGTCTGGA TATGAATTCTATAGTTTGTATTTAACTACATTATGCACTCTCTGATTGTATATTCCTGTTTGGGTTTCAGCAAAATTTTA CTATATTGAGGGAATTGGATATCCGGCAAAGGCAGGAAGATGACATCACGAGAGTAGCGGCAGTTCTTTCGATACCAAGA GTTTCTGCAAGCATCCTGCTTCGTCATTATAATTGGTAAACCGGTTATCCTTCCATCTTGTTTTGATGCTGCCTTGTGTG ATATGTGGAAGGGTTTTGGCACTTTGTTGTGAAGTTATGTACTAAAGGAGATATGGGTTTGTGATGCAGGAGTGTTAGTA AAGTGCATGATGCCTGGTTTGCTGATGAACAACAAGTTCGGAAAGCAGTTGGTTTGTTGGAGAAGCCAGTTTTCGAGAAT CATAAGGCTAGAGAGGTGAGATATGGTTGTTTGGGTTTTAAACCTGTTCACTAATGTTTCGACTTTGTCTTTTTTGCTGT GTGGGTTCCATTTACATGTTTTCCCCTCTTGTGGTCAGGTTACATGCGGCATCTGTTTTGAAAACTATCCTCGTGCTAGG ATTGAAACTGCTGCTTGTGGTCATCCCTACTGCTTTCAATGCTGGGCTGGTAATACTTGTACGCTATTATTCTGTTCTGT TGTGGCCAGGAATACACTCTTCACATCATTATGTAATTGTGCATTTTAG
CDS sequence (LotjaGi3g1v0293800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCCGAGGATGATATGCACGACGCCAACGATGTCGAGTCCCTCGACGACGATTTCTACAGTGGCGAAACCGACGA TAATGCTCCCATGGATTACTACAGCGACTACGACGACGACGCCGATGATTACTTCGACGACGCCGACGATTCCGACCGGA TTCAGTCTCGCCGCCCCGAGCAAAATTTTACTATATTGAGGGAATTGGATATCCGGCAAAGGCAGGAAGATGACATCACG AGAGTAGCGGCAGTTCTTTCGATACCAAGAGTTTCTGCAAGCATCCTGCTTCGTCATTATAATTGGAGTGTTAGTAAAGT GCATGATGCCTGGTTTGCTGATGAACAACAAGTTCGGAAAGCAGTTGGTTTGTTGGAGAAGCCAGTTTTCGAGAATCATA AGGCTAGAGAGGAATACACTCTTCACATCATTATGTAA
Protein sequence (LotjaGi3g1v0293800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSEDDMHDANDVESLDDDFYSGETDDNAPMDYYSDYDDDADDYFDDADDSDRIQSRRPEQNFTILRELDIRQRQEDDIT RVAAVLSIPRVSASILLRHYNWSVSKVHDAWFADEQQVRKAVGLLEKPVFENHKAREEYTLHIIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 137 | 137 | 1.3E-67 | – | |
| MobiDBLite | 1 | 59 | 59 | - | – | |
| MobiDBLite | 1 | 49 | 49 | - | – | |
| PANTHER | 1 | 137 | 137 | 1.3E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0293800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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