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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0294100 |
| Transcript ID | LotjaGi3g1v0294100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; TAIR: AT3G59380.1 farnesyltransferase A; Swiss-Prot: sp|O24304|FNTA_PEA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; TrEMBL-Plants: tr|G7IHS5|G7IHS5_MEDTR Protein prenyltransferase alpha subunit repeat protein; Found in the gene: LotjaGi3g1v0294100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:60141726..60145698) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAAGAAAGACGATGGAATCGGAAGAGGAGCGTGTGCGGCTGAGGGATAGGGCGGAGTGGTCGGATGTTACACCGGT GCCGCAAAACGACGGCCCAAACCCGGTGGTTCCGATCAGCTACACCGAAGACTTCGCCGAAGTCATGGACTACTTCCGAG CCATCTACCTCGCTAATGAACACTCTTCACGCGCCCTTTCCCTCACCGCCGAGGTCATCCACTTCAACGCCGGAAACTAC ACCGTACGTTTATGAATCTCAAAAACCCTAACCAATTTTCAAATCGCAAATCTAATCTCAATTTTGCAGGTGTGGCATTT CCGGCGGTTGTTACTTGAGTCACTGAAAGTTGATCTGCACGGTGAACTAGAGTATGTGGAGCGTGTAGCCAGTGCCAATT CAAAAAATTATCAGATTTGGTGAGATGCTCTGTTTTTCGTTGTATTTTATTGGCGTGTTTAATATTAACCACATGATGTT ATGCTATATTGTTGTTTTGACTCGCACATCTTCGCATTGATCTTGATGCCTGATGTTTATAGGCATCATAGACGATGGGT TGCTGAGAAATTAGGTGTTGAGGCTAGACATATTGAACTTGAGTTCACCAGAAAGATATTGTCCGTTGACGCCAAACATT ATCATGCATGGTCGCATAGGCAGGTTTGTTTCTAACATTGTCTCCATAATTTTAAATTACTCATGATTATTAATTTGTCT TATTAAAGTTACTGGCATGAGCCAACTATTCTATAATTTTAATTGGTTAGTAATTATACATCAGTGTTTTTCTGTTATAT TTCTATCACACCCCTCAAATGAGAGCTCATTGCCCATATTTTATTGAGCAGCCACCAAGGAAGCTCACTAACCCAATTGA GTCTTGTGTGGCAATACACGGACTCGTTTAACTTTGTGCTAGGATTCAATTTCTTTATAAGCAATGGGGAAACCATGATT GAACTCCTAATCACTTAATCATAAGGACTCCGATTATTTGATACTATGTCATGAACTAACTACCCCAAAAGTTAAGTTGA TAGGTAAAGAATTATTGTTCATTTTATAATATAATATGTTGAGATCTCACATATACTAGAGATATGGTCAAAGTAAAGCT TATATAGGCTTGGATAATTTACACCTCATGAGCTAATTTTTGGGGTTGAGTTAAGCCCAATCAAAATTCAAGATGGTATT AATGCCTGTCTTTGATAAGTTATTTGAAGTCCCGCCTTCATTGAGGACCCCTACCCACCTTCATTGTGACCATCCACTGA ATTCTCACTTCCATTGTGGACTCGTAACTCGCCTATATTGCAGCTAATCTAGGTTGCCTTTGTTGAGAAGTCTCACATGG ACTAGAGATATGACCAAATACATGTTTCTTAAGGGTAGAGAAATCCTCACCTCTGAGGTAGCTATTGGGGTAGATTTAAG CTTAGCCTAAATTCTAAGATGGTATCAAAGTCTATCGCATACTCGTTTATTTTAGACCACCCATATAGGTCACTCGCAGA TGTTCATTCCTACAAATTCTACGCTCCAGATGTTCAGCCCTATGTGTGAGGGGCTGTGTTGAGAAGCCCACATTGACTAG TGATTAGGCCAAATAAGTATTTATAAAGGATGAAATAACCCTCACCTCTAAGGTAGCCTTTGGTGTAGAGTTGGACCTAA GTCCTAACTCAAACACTAATATGGTATTAGAGTTTATTTTAGATCCGCTTATTGGAGACTATCCATAAATGGCCCACCCG TTACCCACAAATGTGCATTTAGCCTTTGGTGTAGAGTTGGACCTAAGTCCTAACTCAAACACTAATATGGTATTAGAGTT TATTTTAGATCCGCTTATTGGAGACTATCCATAAATGGCCCACCCGTTACCCACAAATGTGCATTTAGCCTTTGGTGTAG AGTTGGACCTAAGTCCTAACTCAAACACTAATATGGTATTAGAGTTTATTTTAGATCCGCTTATTGGAGACTATCCATAA ATGGCCCACCCGTTACCCACAAATGTGCATTCCTTCAAATTTCACGCTCTAGATTTTCAGCCTTAGGCGTGAGGGGGTAT GTTGAGAAGTCTCACATTGACTAGAGATATGGCCAAATAAGTGTTTATAAAAGGGTAAAACACCTCTCACTCTAAGCCAA CTTTTGGGGTAGAGTTAGACTGAACTCAAATTCCACTAGTCTTCATTATAGCCTTGGTTCTATGAACTCCATGCTATAGA TGTTCAATCTTGGGTATGGAATCCCATATTGACTAAAGAAATGACCTAAGTAGAGCTTATAAACACTTGGGCAATCTTCA CATTATGAGCTAGCTTTTGGTGTTGGGTTAGGTTATGAATGTTGAATTTTATTAATTCAATTGTTGTGTTGAAAGTTTTC ATTAAATAGACCAAGTCTACAAAATTTTATACAATTTGAAAACCAATTGATACTTTATCATACATATTTTATTGCATAGC AATTATTTCAAAATATAAGTAAATATCAATATTGTTCAATGGTTGGATTGATGGAAAACCATGAATCTTAAATTTATCTA AAATTTGTTGTGTGTGATTATAACGTTAATGTCCCATCCCTAAACGGTTGGATTGATGGAATTCAACATTATAAGAAGTT ATGAGGCGAAGTAAGTGGAACAGGACTTGCTCTATAAGTAAATGGGTCCCCAGATTAATATTTCTGCAGTAGCCTGAGCA CTATATTTTATTGTAGTTATTAAGACTCAATAGAATTTTGCTTCTTTTGTTGTTGGACAGTGGGTTCTTCAAACACTTGG AGGATGGGAAGATGAACTCAATTATTGTAGTCAACTTCTTGAAGAAGACATATTTAACAACTCCGCTTGGAATCAGGTAT GCAACCTTGGTGCATGTTACCATCTTGGTACATGACAATAATATTCAGAATTGATTGTATGATTGTTGCCTAATTGAGAT CAAATGCCTATAGATGTACTAAGCATTGCCAATAAAATAGTCACATCTGGAAAATGACTACTTCACAGTACTGTGCCAAA GTTCCACCGGGTCCTTAATTTTAGCTAATTTGCTACCAAAGATCACAAATTCCTTATTACTTTTAGGTCCTTTGCATAAT TTAATTGATTTGGGGTTCAGTCTCTTCAATATAACTTAATGAGCTAAATTCTTCTGTAAGGATTATCTACATATTGTCTT CCACATATTTTCTTGACACCATGCTGTCTTGTAATTTCCCTACCTAATCCATGAGAACAATAACATTCCTCGGACTGATA AGTGCCTATAAAGTTCCTGGGGAATTTAGGAATCCTGTGTTTGCCCTGACACAACAAGCTATTGCTACTTAATTACTCGC ACGAATAGCCAATAATGAGGAAAAAAACAAAAGGGGAGCCTTAATTCCTTCCTATGTTCTTATTACATGTATTACAAGTT TTCCTCACATGGAATAACTTGATAATCTATTTAATTTTTAAACCATTTTCTTCATCTTTTTTTAATTTCAGAAAATTGAC ATGTACTATTTTATACAGAGATATTTTGTCATATCAAGGTCTCCATTCTTGGGGGGCTTAAAAGCTATGAGAGAGTCTGA AGTACTTTACACTGTTGAAGCCATTATAGCCTCCCCTGAAAACGAAAGTTCATGGAGATATCTTCGAGGACTTTTCAAAG GGGAAACCGCATTATATGTAAATGACCCTCAAGTTCCTTCAGTATGTTTAAAGATTTTGAATACTAAGAGCAATTATTTG TTTGCTCTTAGTACTCTTTTGGATCTTATTAGCCTCGGTTATCAACCAAATGAAGACTTCAGAGATGCCATTGAGGCTAT AAAGACTTCGGATTTTGATAAACAAGATCATGATATAGCCAGAAATATTTGTTCTATCTTAGAACAAGTTGATCCCATTA GAGCAAACTATTGGATCTGGCGCAAGTGTAGAGTTTCTCAGGTGGCGGCATAG
CDS sequence (LotjaGi3g1v0294100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCGGAAGAGGAGCGTGTGCGGCTGAGGGATAGGGCGGAGTGGTCGGATGTTACACCGGTGCCGCAAAACGACGG CCCAAACCCGGTGGTTCCGATCAGCTACACCGAAGACTTCGCCGAAGTCATGGACTACTTCCGAGCCATCTACCTCGCTA ATGAACACTCTTCACGCGCCCTTTCCCTCACCGCCGAGGTCATCCACTTCAACGCCGGAAACTACACCGTGTGGCATTTC CGGCGGTTGTTACTTGAGTCACTGAAAGTTGATCTGCACGGTGAACTAGAGTATGTGGAGCGTGTAGCCAGTGCCAATTC AAAAAATTATCAGATTTGGCATCATAGACGATGGGTTGCTGAGAAATTAGGTGTTGAGGCTAGACATATTGAACTTGAGT TCACCAGAAAGATATTGTCCGTTGACGCCAAACATTATCATGCATGGTCGCATAGGCAGTGGGTTCTTCAAACACTTGGA GGATGGGAAGATGAACTCAATTATTGTAGTCAACTTCTTGAAGAAGACATATTTAACAACTCCGCTTGGAATCAGAGATA TTTTGTCATATCAAGGTCTCCATTCTTGGGGGGCTTAAAAGCTATGAGAGAGTCTGAAGTACTTTACACTGTTGAAGCCA TTATAGCCTCCCCTGAAAACGAAAGTTCATGGAGATATCTTCGAGGACTTTTCAAAGGGGAAACCGCATTATATGTAAAT GACCCTCAAGTTCCTTCAGTATGTTTAAAGATTTTGAATACTAAGAGCAATTATTTGTTTGCTCTTAGTACTCTTTTGGA TCTTATTAGCCTCGGTTATCAACCAAATGAAGACTTCAGAGATGCCATTGAGGCTATAAAGACTTCGGATTTTGATAAAC AAGATCATGATATAGCCAGAAATATTTGTTCTATCTTAGAACAAGTTGATCCCATTAGAGCAAACTATTGGATCTGGCGC AAGTGTAGAGTTTCTCAGGTGGCGGCATAG
Protein sequence (LotjaGi3g1v0294100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESEEERVRLRDRAEWSDVTPVPQNDGPNPVVPISYTEDFAEVMDYFRAIYLANEHSSRALSLTAEVIHFNAGNYTVWHF RRLLLESLKVDLHGELEYVERVASANSKNYQIWHHRRWVAEKLGVEARHIELEFTRKILSVDAKHYHAWSHRQWVLQTLG GWEDELNYCSQLLEEDIFNNSAWNQRYFVISRSPFLGGLKAMRESEVLYTVEAIIASPENESSWRYLRGLFKGETALYVN DPQVPSVCLKILNTKSNYLFALSTLLDLISLGYQPNEDFRDAIEAIKTSDFDKQDHDIARNICSILEQVDPIRANYWIWR KCRVSQVAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 329 | 328 | 4.0E-102 | – | |
| PANTHER | 4 | 323 | 320 | 1.2E-120 | – | |
| PANTHER | 4 | 323 | 320 | 1.2E-120 | – | |
| SUPERFAMILY | 8 | 321 | 314 | 4.05E-84 | – | |
| ProSiteProfiles | 56 | 90 | 35 | 14.683 | ||
| Pfam | 61 | 86 | 26 | 1.9E-6 | ||
| ProSiteProfiles | 91 | 125 | 35 | 17.214 | ||
| Pfam | 95 | 121 | 27 | 1.7E-10 | ||
| ProSiteProfiles | 127 | 161 | 35 | 17.09 | ||
| Pfam | 131 | 157 | 27 | 1.1E-11 | ||
| ProSiteProfiles | 162 | 195 | 34 | 14.665 | ||
| Pfam | 165 | 191 | 27 | 5.3E-7 | ||
| ProSiteProfiles | 202 | 236 | 35 | 11.293 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein prenyltransferase activity | Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein. | ||
| Biological process | Protein prenylation | The covalent attachment of a prenyl group to a protein; geranyl, farnesyl, or geranylgeranyl groups may be added. |
Expression pattern of LotjaGi3g1v0294100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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