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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0322600 |
| Transcript ID | LotjaGi3g1v0322600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT5G15340.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P94479|YNBB_BACSU Uncharacterized protein YnbB; TrEMBL-Plants: tr|A0A1J7HI74|A0A1J7HI74_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0322600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68774716..68779594) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAATCCATCAAAAGCTGAAACACAAGCGAAGATAAGGAGGGAAGAGCAGCCAGCAAGAATGCACGCCATCTCTGCAT ATCCTGCGCTTCCTATTCGAGCTTCCATTCCAATGGCTACAGTTCGCTGTGCCTCTCGCCTCTCCATTCCTGTCAACGTT AACACCATTCGTCCTCGCTTAGCCAGTCCCTTCGTACCAGAGGTACCACTCTTACTGTTGGAAACCCACAACCTTATTTT ATCACAAACCCATTTGGTTACTTTAAATGCAGTGAAAATTGTAAACGAATGATACAAATTTGATCTTTATGAAACCCAGA AGCGTATTTTGTCACAGCATCATTTGGTTGCTTGGGAAGCATTAGATATTGTAAACAGAGGAAAAAGTTATTTTCTTTTT GATGAACTAGGAAATGGGATGTTTGTTTGTTTTTGTCCACTCACTGTAACTGTGAAATCTGAAATATGGGAATTGCTGTC TGGTATGTCTGCATGGTACTTGTGAAAATGTCTGAAAGAGAGAGAATGTCAAGTTAGTGTATGTTTTTGGGTTGAATAAC CTTTTATTTCATTTTCATATTTTGTTTTTGGTGTTTACTTAATGTGTTAAAGAAGTAAAAGAACTAAATGTTAAATGGTT CTACTGGGTTGTGAACTTGTAATCATCAGTCATCACAGGTTTGTAAGAATGTAAAAGAATCTTCCATTTGAATGTGCAAA TCTGCTTGGACCATAAGGAATGCAGCTTTGAATTTTAAATTTGATTTTCTGAAAAGGGTATATAGCATTTGATTTGGTTT TGTTTTAATTCCTGAAAATATTTCTTTCTCATTCTGATATTCTTGGTTTTTCTTCTGGTTTGCTATGAGCATTGAGCTTG TTGGAGTGTTATCCAGCTTTACTTCTAATTTATGTTGATTCCGATGTTGAGCGTGCCTGTTTTAAGTGGTGAGAAGGCTC GTAGATTGAGATAGGACAGTAATGGTTTCCTTTTCTTGCAGTGCAGGTTGTGGAAGCAGTGGATGCATTGCATTCAGAGT TCAGGGCTGTGGATAATTTGGTTGCGTGCAATACCACTCGTGTATTGAAAGCTTTTCAGAATTCTCGAGTTGGATCTCAT GTAAGCATGCCCCTTGATTTAGATAACTGGTTTGTATTATGGTATTCTTGGATTAAATAATCATTTGATTTGATGCTCAT GGGTGTATGGAGAATAAATGTTCACTGTTGTTATTGGAATTGGTAGAGATGTTTTATAGGCCATTGGGCTGATTTTCTAT GTGACTGATTTTGTTAACATTTTGAGCAAAATCATAAGAAAAAAAGGAAACCCAACAACTTAAGATTTTACTAGTGAGAA TCTGGAGCTGCCAATTGAAACATGAACAAAAAGTATGCTTTTACGTCTAACTTTAGGATACTTGACAAACTAGAATTGAT GCCTTTTCAGGTAGAGTTGACAGACAGTCATGATTATTGAATTGTAATCCCTGTGATGCAGAAAACTTGAACTTCTGTAC TTTGATTTGTGACAGAGAAATAGGAAATGAAACACTCCCCTTCCTGATCAGAAAAAGATCAAAAGATTATTTGCAAATTC AGCATCTCATCAGTTGGTTGTTTTTACGAACTCTGCCTTAAATTTGATGCCTGTTTTGTCAGGATGTCTTTGATTAGGAT GTTGATTATTATTTTTTTACAGCTCTTGATATTTGATACATACAAGCAGTCAAACTTTTGTTACAATTTCTGTGGTAATA GTTTTCTGTATTTTGGCACTCTAATTGGTTGTTAACATGCATATTGCTATCAGCACTTTGCTGGTTGCACTGGTTATGGT CATGATGAAGCTGGGGGACGTGAGGCACTTGACCAAGCCTTTGCCGAAATTTTTGGAGCTGAGTCAGCTATTGTTCGTTC ACAGGTTCTTAGTTTTCCCTGTGTTCTTTTTTAATAGATCACTTCTTAGTTCTTACTGAAGATGCCCTTATAGAAGCCAT AATATTCTCATCTATCAACAGTTCTTCTCAGGTACTCATGCTATCACATGTGCTTTATTTGCATTCCTGAGGCCTGGGGA TGAGGTAGCCATTTCCTTTTGACATTCCATGTTTTTCCTTATTTGCTTGCAGTTTACCTCTGTAGTTATATAATATTATC TTGTTGTGTTTTAACTGGAATAAGGTTTAGACTAATATAGCTGTCAGCTTTTGGCAGTTGCTGGTGCTCCCTATGACACT TTAGAGGAAGTAATTGGGAAAAGGGACTCTGGTGGACTGGGTTCCATCCAAGATTTTGGGGTGGAGTACCGAGAAGTTCC AGTATGCTACTAATCAGTAATTTCTGTTTGTTCTGGCTGTAATTTATTAGTCTTCTTTCTGACTCTTCTCTGACACTTCT CCATCAGCTTGCGGAGGATGGTGGACTCGACTGGAATGCGCTGATGGTTTCTATCAAACCCAAAACAAAATGTGCTCTAA TACAGAGATCGTGTGGTTATTCATGGCGTCGAAGTTTGAGTGTTAATGAGATTGGGAGGGCAATAGAAATAATCAAAGTA AGGTTCTTAATGTTGCTCTTTCTTTTGAATTGTAGCATCATGATTTTCTGTTAGCAATAATAGAAACTTACATATTTTGT AATAATTGTTTAATTTTGTATATCTAAAATGCCATAGTAATAGAAACTATATTTGCTTTACTGCATGCTCTATAATATTG AGTCAATTTTATCCTAGCTTCTATGTTTTTCGTTAATTAAACCAGTGATAATTTTCCTACAGTACTGTTGCATTGGAATA ACATTTTTCCCAAATAAAATATTGGGAACTTCTGAAGCACACCTGCCTTGTTCCTGTTTTGACCTAAAAACATATGGAAA AAATAGTGGCTTATTAAAGAAGTATACTTTTAAGGTGTTTGTTTTAGAATTTTACACCCAAAAGATAATCCTTCAGCTGA AGAAATCTGTTTGTAACTCTCCTATAATTTTTCTGATCATGGAATTTTCATGTGATCTCAGTTTTTGATGTAGAGATTGC TGAGGAAATGAGACAGTAGATGTTGTTTTCATGATGATGTTAAATGACATTATCTAATTAGTTGATTAAAAAGTGCAATT TTGCTCTAACTTTTACCCATGAAATCTTCATTCTATAGCAGTCTTTCCTCATTGTGTATGCAGAAACTGTATTCTCAGTT TAGGTGAAACACAAGACTAGAGTGAAATTACAAGTTTTATTGTCTCATTGTGTAAGCTGATTGTCTGTGCTTTTCCACGG TAAGTAACCTTTTTCTGATGGTATTTTCACTCTATGACATGCTCCAAATATACATGTGCAGATGCAAAATCCTGGCTGTT TAGTCATGGTTGACAATTGCTATGGTGAGTTTGTGGAAAGCATTGAACCTCCCATGGTGGTACGTGATAATATGTCATAC TTTGTGTTGCTTTATTCCAAGGATGAGTAGTATAACCTTGTTACATTGGTGGGCAGGGTGCAGATTTGATCGCAGGCAGT CTGATTAAGAATCCTGGTGGAACGATTGCACCATGTGGTGGATATGTTGCTGGGAGAAAAAAATGGGTTGAAGCAGCTGC AGCCCGTCTTTCTGCGCCCGGGCTCGGTATGGATTGTGGTTCAGTCCCTGGTGATATCATGCGAGCCTTTTTCCAAGGAT TATTTCTTTCACCTCAAATGGTTGGTGAAGCAATCAAGGTACTGATTCTTCATTTTAATTATAGAGATATTGTGTTTTTT GTACTCATATCTGATAGTGACTCAGACTTTCTGTATTCTAAGGGTTCCTTTCTGATTGCTGAAGTTTTGGCATCTAAAGG CTATAAAGTGCAGCCACTCCCACGTGTCCCCCGTTATGATACTGTTCAGGTTTTCTAACTGAATCTTGTGTTGTACTTTC TAAATGAAATATTGGTGACTGATTTTTGTTTTAACGTTGAGTTACCGGCGTTACTAGCAAGAATATATTACTGGTAGAAA AGCTGCTTTTGATCTAAACAAAAGCTAGTCAGTTAGGAATCTCTTTTCAATTTATGAAATGATAGTTACTCAAATGAAAA GTAAAATCAAATTTCAATGCCAATAGGCCGTGCAGCTTGGAAGCCGTGAGCGTCTCCTTGCTTTCTGTGAGGCTGTTCAG AGAAGCTCTCCGGTTGGTTCATATACCAAACCAATAGCGGGTACTACTCCTGGATATGCATCTGAGGTCTGTTCAGATTT CTCTCAATGTAATGTCATGTCTTGCACCTTTTGGGATGTTTATCACTTTTCTTTCCTGGCAAAAATTAATAACTGTTTGA TATCAATCTCAGGTGATCTTTGCTGATGGAACCTTTATTGATGGGAGTACTAGTGAGCTTTCATGTGATGGACCTCTTAG AGAGCCATTTGCTGTATTTTGCCAGGTACTTGTATTTTGTATCATGCTATACTACCTATGATGTGCTATTTTCTTGTTAT CTTGATTTTATTTTCCAAATGTAGGGTGGCACTCATTGGACTCAATGGGGCTTAGTTCTGGGAGAAGTTTTGAAATCTAT ATGATGGAGTGTAAATATCAGTCACTTAGTTCATACAAAATATTGTTATGTGGCCTTAAGAGGACAATGGACATGGTTCA GGTTGGTGCAAATGCAAAGAATAAACAAGTATTACTTGCACATAACAAGATCACTGGGTTCTATTCTAGATTGTGCAGGT TTTGATATGTATGTAGTTGTCAACCTCATTGAAAGAGCTTCTTTTAGAAGTCTTCTTCTCTGGTAGATTAATAGCTTGTA AAGGGTTGAACACAATCTTTTTTTTTTTTTGAAAGAAGGTTGAACACAATCTTTGAAAGTAAAATTGGTAACTTTTTTT
CDS sequence (LotjaGi3g1v0322600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGCCATCTCTGCATATCCTGCGCTTCCTATTCGAGCTTCCATTCCAATGGCTACAGTTCGCTGTGCCTCTCGCCT CTCCATTCCTGTCAACGTTAACACCATTCGTCCTCGCTTAGCCAGTCCCTTCGTACCAGAGGTTGTGGAAGCAGTGGATG CATTGCATTCAGAGTTCAGGGCTGTGGATAATTTGGTTGCGTGCAATACCACTCGTGTATTGAAAGCTTTTCAGAATTCT CGAGTTGGATCTCATCACTTTGCTGGTTGCACTGGTTATGGTCATGATGAAGCTGGGGGACGTGAGGCACTTGACCAAGC CTTTGCCGAAATTTTTGGAGCTGAGTCAGCTATTGTTCGTTCACAGTTCTTCTCAGGTACTCATGCTATCACATGTGCTT TATTTGCATTCCTGAGGCCTGGGGATGAGCTTTTGGCAGTTGCTGGTGCTCCCTATGACACTTTAGAGGAAGTAATTGGG AAAAGGGACTCTGGTGGACTGGGTTCCATCCAAGATTTTGGGGTGGAGTACCGAGAAGTTCCACTTGCGGAGGATGGTGG ACTCGACTGGAATGCGCTGATGGTTTCTATCAAACCCAAAACAAAATGTGCTCTAATACAGAGATCGTGTGGTTATTCAT GGCGTCGAAGTTTGAGTGTTAATGAGATTGGGAGGGCAATAGAAATAATCAAAATGCAAAATCCTGGCTGTTTAGTCATG GTTGACAATTGCTATGGTGAGTTTGTGGAAAGCATTGAACCTCCCATGGTGGGTGCAGATTTGATCGCAGGCAGTCTGAT TAAGAATCCTGGTGGAACGATTGCACCATGTGGTGGATATGTTGCTGGGAGAAAAAAATGGGTTGAAGCAGCTGCAGCCC GTCTTTCTGCGCCCGGGCTCGGTATGGATTGTGGTTCAGTCCCTGGTGATATCATGCGAGCCTTTTTCCAAGGATTATTT CTTTCACCTCAAATGGTTGGTGAAGCAATCAAGGTACTGATTCTTCATTTTAATTATAGAGATATTGTGTTTTTTGTACT CATATCTGATAGTGACTCAGACTTTCTGTATTCTAAGGGTTCCTTTCTGATTGCTGAAGTTTTGGCATCTAAAGGCTATA AAGTGCAGCCACTCCCACGTGTCCCCCGTTATGATACTGTTCAGGCCGTGCAGCTTGGAAGCCGTGAGCGTCTCCTTGCT TTCTGTGAGGCTGTTCAGAGAAGCTCTCCGGTTGGTTCATATACCAAACCAATAGCGGGTACTACTCCTGGATATGCATC TGAGGTCTGTTCAGATTTCTCTCAATGTGATCTTTGCTGA
Protein sequence (LotjaGi3g1v0322600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHAISAYPALPIRASIPMATVRCASRLSIPVNVNTIRPRLASPFVPEVVEAVDALHSEFRAVDNLVACNTTRVLKAFQNS RVGSHHFAGCTGYGHDEAGGREALDQAFAEIFGAESAIVRSQFFSGTHAITCALFAFLRPGDELLAVAGAPYDTLEEVIG KRDSGGLGSIQDFGVEYREVPLAEDGGLDWNALMVSIKPKTKCALIQRSCGYSWRRSLSVNEIGRAIEIIKMQNPGCLVM VDNCYGEFVESIEPPMVGADLIAGSLIKNPGGTIAPCGGYVAGRKKWVEAAAARLSAPGLGMDCGSVPGDIMRAFFQGLF LSPQMVGEAIKVLILHFNYRDIVFFVLISDSDSDFLYSKGSFLIAEVLASKGYKVQPLPRVPRYDTVQAVQLGSRERLLA FCEAVQRSSPVGSYTKPIAGTTPGYASEVCSDFSQCDLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 335 | 306 | 1.5E-222 | ||
| PANTHER | 30 | 335 | 306 | 1.5E-222 | – | |
| Pfam | 50 | 335 | 286 | 1.8E-120 | ||
| Gene3D | 53 | 337 | 285 | 4.0E-116 | – | |
| SUPERFAMILY | 55 | 404 | 350 | 3.1E-38 | ||
| Gene3D | 91 | 306 | 216 | 4.0E-116 | ||
| Gene3D | 357 | 432 | 76 | 1.2E-22 | – | |
| PANTHER | 359 | 430 | 72 | 1.5E-222 | – | |
| Pfam | 359 | 429 | 71 | 4.7E-17 | ||
| PANTHER | 359 | 430 | 72 | 1.5E-222 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi3g1v0322600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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