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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0333400 |
| Transcript ID | LotjaGi3g1v0333400.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 5; TAIR: AT2G43280.1 Far-red impaired responsive (FAR1) family protein; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SYH3|A0A151SYH3_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi3g1v0333400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70268500..70271288) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAATCCCAATTAGATGATGGAAATGACGGAATGGAAGTTTCTGAGGATGTGGGTTTGAGTACATATGAAGTCGAGAT ACATCGAGAAACTTATGAAGGTATCCTATTTTAATCCTTTGATTTAAATATTGACTGCAAAATGATTAGAAGTTGATGCA TGTTTTAAGTATAAACCCCTTGCATCCTGTTTATGACACTGTCCCGGTCACTGTATAATGTATGTAACAAATGATGCAGT GTTTTAAGCTATGCTTTTTATGGTAGTAAACCTGAGATCTTGCGCCCTACCCCCTGGGGTGGTTAGGAGGCCCTGGTTAG TACAAAGGGTGATTTAACTTTTCCTGTTCTACAATATCCACTTTGTTTATGGCACACGTTGACCGTAGTTCCCACTTTTC AACTTCCAAAAATTGTTACTGAACATTAAAGAAGCCTAAAATTACACTGAAATCAGTATCACATATGTGGGAAGTCTACT TCAAGTACTGATGAAGTCACAGTTCTAATTTACTATTGTTGCACGCTACTTAATTTATCTGTTATGGACTTGTGGTTTGT AGGACATAGAGTTTATATCTTAAAATATACCTAAGATTGATATAGTTATTTGACATCACAGCTCAATCCTACAATGCTTC CCTGCATTAATGCTGTCCATTATATATGTTTACTTCCTTAGCTCCATCCCTGTTGCATTTTCTTTGCTTTTCTTGCACAT ATGCTCCTCAAACAAAGAAATTATTGAAGACATTGAGCCTAAGACACTCAAAATGCGAAATACTGTCCAATCTCTCTGCA TATTAGACAAGGAAACGCCCAACTTAAACCAATGTGAAAATTTTCAAAGAGACACATTTTACAGTAACTTGTTCAAAAGG TAGTCCTTGAAGGTTTGAATATTCAATTTCTGCTCTAGCCATATACTCCAGTGAATATCATAAAATGCGTACTGTCAAAA ATTTGACCTTTTTATTTATAATATTTTCCTTCTGAAAACTTTAAAATAAGCCATGAGAAATTGCTCTAGGGTGTTAAAAG ACATACCCAGGATTCTCGAAAATTACCAAAAAGTTTATTGCCTGAGATAGCAATGGAATTGATAGATGTTTCCAAGCTCA CGTTTGACTTCACATCTATATCAGGAAATATCTGCCTGCAAAGTCTCATAATGTATTTGGCATTAGCTTGTTGAGTATTG CTATCAAAACAATTTAAGGGTTTTAGATTTCCAATCAGGCTTGTCTAGAAGACACTTCTCCTGATTAGAATGAGTAAGAA CTGAAAATAGGGTTTGCATCAGTGCATGCAAGAATTAAGACCAAACTCTTCAGCATGGTTGGGGGGTGAATAGAATTATA TGTTATATCTCTTATGTAGGTTCTTGAAATTAATGGAAACTATGAGGGGGATTGAAATCCTGAAGGGAATGAGAACTTTT TAAGGGATGGTTATATAAAGGAAACAATGATAAAGACGAGGAAAAGCTTCCCCTGATGCAATATTCCCTGACCAATAGTC CTTTCAAATTCAATGCCTCAAACAAGAACCATGACCCAAAACCAAAGAAACCAGTAGTCTGTTTCAATGTAACATATCAG TGAGAGATTTTTCCAGAGATTCACATGGGTTGCAGTGCTAGTGATTGCTGGGCTGGAATTCCTCCACTAGACAACTTTAT TTTTTTCCTCTTTTTCTTGGAGGGGAAGGGGTGGGGCTAAGAAAAGAACTAGAGTAAGATTTATGCCTGTGTGCTACGTA ATGGTTCTCTATAGAGAGAAATAACCATTGAACCCTTTGATTGGATATTCTTATTTTTTGCTTTTCTGCATTTGAAGCAA CTGAGCGATTTTAATTTAAAGTTTTTTCCTTGTATTGAACAAATGTCATCTCCTGCATTGTTTACTTTCATGGTTTCATT GTAAAAAACTCTTTGCTGGGTTCAAAAGAAAAGTTATTCTGTGACAGGGGATCCAAATGAGGGGTGTAGGGTGCTAGAGA GTACTTCTGGTGGAGAATTGGGTGTCTCTGATGACCATGCTATCCAGGAACCGTATGAAGGCATGGAATTTGAATCTGAA GATGCTGCTAAGGTATTCTATGACGAATATGCCCGTCATGTTGGATTTGTCATGCGTGTGATGTCTTGCCGACGCTCAGA AAGAGATGGTAGGATTCTTGCCCGTAGGCTTGGATGTAATAAGGAGGGTCATTGTCTCAACATCCGAGGGAAATTAGGGT CAATTCGCAGACCAAGAGCCAGCACAAGGGAAGGTTGTAAGGCGATGATTCATATCAAATATGACAAGTCTGGAAAATGG GTGATAACAAAGTTTGTGAAGGATCATAATCATCCACTAGTGGTCTCTCCACGTGAAGCACGCCAGACAATGGTAGGTCC TTATTTCTTATCTAAAAGTATACTCCATCATTGATAAATGTTTTACAGTCATTTCAATTATTAGTGATATCTTGTGAAGC ACACCAGACCTAAATTATTGTTGTTATATAACATCCCTGGTTTCTTAAAACAAAAGGATGTGTTTGCTAACATTTTCTTA TTCACTTTCTGTTGCATTTCTGTTTTAGGATGAGAAGGATAAAAAAATTCAGGAATTAACAGCGGAGATTCGGATAAAAA AACGGTTGTGTGCGACATATCAAGAGCAGTTAAGTTCTTTTATGAAAATTGTTGAAGAGCACAGTGACAAGCTGTCTGTG AAAATTCATCACATAGTTAATAATCTTAAGGAATTTGAACCCATAGAAGAGCTTTTGCACCAGACGTAG
CDS sequence (LotjaGi3g1v0333400.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCCAATTAGATGATGGAAATGACGGAATGGAAGTTTCTGAGGATGTGGGTTTGAGTACATATGAAGTCGAGAT ACATCGAGAAACTTATGAAGGGGATCCAAATGAGGGGTGTAGGGTGCTAGAGAGTACTTCTGGTGGAGAATTGGGTGTCT CTGATGACCATGCTATCCAGGAACCGTATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGGTATTCTATGACGAA TATGCCCGTCATGTTGGATTTGTCATGCGTGTGATGTCTTGCCGACGCTCAGAAAGAGATGGTAGGATTCTTGCCCGTAG GCTTGGATGTAATAAGGAGGGTCATTGTCTCAACATCCGAGGGAAATTAGGGTCAATTCGCAGACCAAGAGCCAGCACAA GGGAAGGTTGTAAGGCGATGATTCATATCAAATATGACAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCAT AATCATCCACTAGTGGTCTCTCCACGTGAAGCACGCCAGACAATGGATGAGAAGGATAAAAAAATTCAGGAATTAACAGC GGAGATTCGGATAAAAAAACGGTTGTGTGCGACATATCAAGAGCAGTTAAGTTCTTTTATGAAAATTGTTGAAGAGCACA GTGACAAGCTGTCTGTGAAAATTCATCACATAGTTAATAATCTTAAGGAATTTGAACCCATAGAAGAGCTTTTGCACCAG ACGTAG
Protein sequence (LotjaGi3g1v0333400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESQLDDGNDGMEVSEDVGLSTYEVEIHRETYEGDPNEGCRVLESTSGGELGVSDDHAIQEPYEGMEFESEDAAKVFYDE YARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCLNIRGKLGSIRRPRASTREGCKAMIHIKYDKSGKWVITKFVKDH NHPLVVSPREARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLKEFEPIEELLHQ T
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 35 | 240 | 206 | 2.5E-121 | – | |
| PANTHER | 35 | 240 | 206 | 2.5E-121 | – | |
| Pfam | 77 | 165 | 89 | 8.4E-29 | ||
| Coils | 175 | 202 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0333400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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