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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0334900 |
| Transcript ID | LotjaGi3g1v0334900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytoplasmic membrane protein; TAIR: AT1G33490.1 E3 ubiquitin-protein ligase; TrEMBL-Plants: tr|I3T6Q5|I3T6Q5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0334900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70478334..70482767) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTTGTTTTCATTAGGCTTCTAAAGAGTAAAGACTGATGTGGTTAGATAAATTTGCTATTTTTTTTTCAGAGGAGCT GAGCCTAACCAGTTGGCTTTTTCTGCTGCTCTTGGCATTACATTTGGAGTATTTCCTATATGTGGTATGTTGTAACTAAC CCACTTTGAATTATATTGTCATTTATGTTAGGAATCCATTCCAATGAAGCAGAGGATCTTTATATTCATCATGTTGTCAG TTGTGTACTTGAATTTCTACTCTTGGAACTGAGATCTTATTGATTTCACACATGTTGATTGAATATTATACTCTTTGATG TCCAGCATATATGCTCAACAATTTACAAATTTCAATTGATTTTCCCAAGTTTTAATGGGGATACATGTGTCACAATAGTG GAGAGTGGAGACCCTTTACCTTTACATTGTCTTTGAATGAAATGAAGAGTTGAAGAAACTGTGAACAACTTCTACAACAA CAACCAAGCCTTTTACAGTGTTACCAATTACCAATAAGTGGTGTCAGCTACCTAGATCATACACTTTCATAATGTCCTGT CATTTATTAAGTTTAAAGATAAACCATTGACCTCTAAATCTTTCTTAATTGATAAGTATGATTATAAGTTGAACATGTAA AATGCCCTAAACTTAGCCACGCTTACAGGCTTGGTCTATTTCCCAATTATGAAAATTGATTGCTCCTTGGACTACTGCCT TTCTTTGTCAGAATTTTCCTTAAAAGTGATTTCCACCAGATTACTGTCTTCATTCATCCTGATTACCGTCTTTGATTAGG TTTTCAGTTTGCTCTCTCACATCATTCATATGTTTTCTATGAGGTTTGAACTTTGAACTGTCAATTTTCAGTTAACTAGT CTTGCATAACCATATCTAGGTAACCATGGTTTAGTATTGGTAGCCATCTAGCTAACATAAGCTCAAAACCGTATCTCATT TAATATGGATGAGCAACTTCGTATTTAAATTAAATCTAAACCGAGTTAATTTACCAAACCAAATGCATCACCAAACATTC AAAAGAAGGAAAGTACGCTGTTGATTAGATATCTGAGAAAGCATACTGACATGAAATGCAGCAGTTCTTCTACAATTTGT TAAACATGCTAATGTTTCTTAAATAGGTGTCACTGTATTCCTCTGTGCAATGGCTATTGCATTGCTTGGATCATATTGCC ATGCTCCAACTGTGATGCTTGCTAACTTTGTTGCTACGCCAATAGAGTTGAGGTAATATGCATTCAATGCTATCCATGCA TCTTACTTTCTATCTCTATTCTCTAATTCTCTATGATGAATGTTTGTACTTGTACTTTGTTGATCATGTTACAATCAAGA TATTTTGTGCAAATATATTGTAAAGTACTTCTTTATGGCTCAATCTTTGTTAGGAGGGAGTCTTTTTTTTTTTCCTTTTA AATTTGTCACGGAAAACATATATTTTCCAATCAAGGTGTGTCAGAGAGGCTCCTGATAAGTGTATCAAACGGTCTTGATT GGTCCATGTAGCCAACCTTTTCTAGTGGAATAGGGTTTGAATATTGATGTTGCATCCTAGGAGTTCAGAGTTAAGGAGAT TTGGACAATTAGTATGGTGTTAATTGGGTTAGTACGGAAAGAATGTTTATACTTTTAAGAAAGAGTTTCTCATAGGAAAT CCATTCTGCATCAATTTTATTGTGCAAGTTGTGAGCCCTTAAAAACAATGAGAACATGCATAAATTTTTAATTATGCTCA TATGTCTTTTCATGCCCCTATTTTCTCTTGTGATAGACATTTATGTTCTTTTACTTATTTACACGGAAATGTTGTTTTGT TTCATAATTGGTTAGATTACATGTGCATTTCTATGTTGATATTATTCTAGTGGGCATCAGCAGCATTGATATTGCTAATT AAAGATTTATTTGAAATTTCAGTCTGGTTGTACCCTTTCTACGCTTTGGTGAAGTTATCTCTGGTGGACCTCATTTCCCT TTGACATCTGATGCTTTAAAGAAAGTTTTTACTGGTCAAGCTTCACGTGAAGTCTTATTAAGTGTTGCCCATGCGGTAGG TACCATGTTCCATAGTATTTTCTTATATGCATTTATCTGAAGAAGACTGATCGTTCTGTGCATATAGATGTGTACATGAA ATATAAAATCAAAACATCCATTTCTTTCTCCTTTTCCTAGATCTGCCTTTTCACGCAAGTTAAAGTTTGAGCTTTTAAGT CCTTCTCTGCCTTCCCTGGATTGAGGAATGGTGTTAAAAATGGAGAGTGAACCTTTTTCCCAGGTTCTTTTTTAAATAGT AGTTACTCCAATGGGGAGTCACAGAGGAGGCAATCTGATGCCGGACAAGCCAAGTACTGATTACGTTGATGTGTTGGGAT GACAGAGTAGTTGGGGAAAAAACAGGGTAGAGGGTGAAGAGTCTGGAGACAATGAGAAAGGACATCTCAAATAATGAGAA AAAACAAGTGAAAACATGATTATAATTCACTTTTCAAACTGAAATATTGATGGCATATTGAAGTTATGATTTAGGCAACA AAAACTGCAATTCTAAAGGCATAATCATGTCAATATTCTGGTTTAATCATCTCAGCATAACAAAAACGTTATAAACTATA GTTGCGTAGGGTTATTAGGATTTAATATGGTCTTTTAGTTTAAATTAAATTTACTTTCAATCTTAGTGAGTTTTTGTTTT GTATGCCATTCCCTTGTTAAGTTCTATATCCGTGGTTGTGTCTGTTATTTAGTTGGTAATAAATTTTGTTTTATTGCTTA GATTTTTCTGATGGATTTAGTATTAGTAAAAAGTCTCAATCCTTACAGAATTAGGAGTTTGTAATTCTGTTCCCATCTGG TGCGTCGTAAGTGAGGTTGATTCAAACCTTTTCATTTTTACGAGTTAAGTGAGTTGATATGTCTTGCTTGTATCATATGG TGATGCTTAAGAAACACTTTTGTTTAAGTCTAGGTTAATATAAATAATTTCTTCTCAACTTATAGTATATGTCTTCAAAT TTTTATCCCTGCCCGGACTTGCTTCTGTCAACTTCATTTACGATTTCTCTTTAAAATCTCTATCTTCTTCTTTGTTGAGT CTCTAGAACCCCTTATAGATAATACCTAGTTACCTACTATCACTGCAGGTACTATTCAATGCACTCAAACGGGCAATATT TTATTTATGCGTTATATAAGCATTTTCTTTTGAAATTCTTAGAACTAATTATTATAGACAACAGTTATGCACTATGGGAT TGACTTTTACCTCTTAATCTTCTTTGTGATACTCTGACTATTAATCTTTCTATGCATGCGACCCTACCATACTGTATTTT GGTGTGCTTTTGTACCAAATAGTGCAGAAATCAACATTTTCTGAAATTCATATTCTCCCTTTGGGTGGGGTTGGAGGGTT AGCTTCCTTATATAGGATCTGGCATTTCATTAGATGAAGGGTTTGAAGTAAAAAATTGTTTATGTTGTAAATGTTATGGA TCAGATGATGCCAGTAATTAATATCCCGTCACTGAATTAGTGACCTCTATATACTGGCCACTAATGCGTGACCCTTTGGG ATTTGTTCAAAGTGAGAAGAAATGGTGTAGTTACACGCTAGCAGATCCTTTATTGTCTTGGGATTTAGGAATTCAATGGA TCGTTACCAAGAAATACACTGGCTAAGATGTGCATAGAGCAATCCTTTCAGATAGTTTATTTTTGGAGTTAGGCCTAGCC AAAATTCCAAGACCATGTAGCGTTGAAGGACCTAATGGAGCTACTTGAGGCCATTAATAGCTTCATCTGAATCATAGATG GTTGTTTGGTTTCATATTCACATTACAAGTCCTGGACCAATATAAGGGTGAGAACACAAGTTCGAACCCCGGGAAAGTCA TTTGTTGGGAGAGATGGCTACAGTTTTCTGAACGGGTGGGAACATCCGTCAAAGACAAAAAAATAAAAATAGAAAAAATT ACAAGTCCTGGAGCATCATGCAAGGATTGAGAGGTTCCCCTCTGTGGAATGCTTAAATCTGGCTGCTTGTAATATTACAT CTAGCAATATGCCACTGATTGTCTCTAATTTTTTCTTACTCATTTCTAATATCATGTAATTCTCTGGCTCAATAATTAGC TTGATTCATTTTCCCTTTTGCAATGAAGTTTACATGCTTGATTTCCTTTTGAAAGTTTATACAATGATCAAATATGAATA ATTATTTGTTTATTGAACTTTTGCAGTTATTAGGGTGGCTGGTTGCATCACCTTTTATTTTGGGAACTCTGTACATAGTA CTATTACCATGCTTCAAATTTTTGGTTCAGAAATTCTCAACTGTTCCTTTAAGTCCGAAGAAGCCTCTTCTCCATCCACA CTCAGAAATAAGCCTGAAGGTAAGGGATGTTTGA
CDS sequence (LotjaGi3g1v0334900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATTGCATTGCTTGGATCATATTGCCATGCTCCAACTGTGATGCTTGCTAACTTTGTTGCTACGCCAATAGAGTT GAGTCTGGTTGTACCCTTTCTACGCTTTGGTGAAGTTATCTCTGGTGGACCTCATTTCCCTTTGACATCTGATGCTTTAA AGAAAGTTTTTACTGGTCAAGCTTCACGTGAAGTCTTATTAAGTGTTGCCCATGCGTTATTAGGGTGGCTGGTTGCATCA CCTTTTATTTTGGGAACTCTGTACATAGTACTATTACCATGCTTCAAATTTTTGGTTCAGAAATTCTCAACTGTTCCTTT AAGTCCGAAGAAGCCTCTTCTCCATCCACACTCAGAAATAAGCCTGAAGGTAAGGGATGTTTGA
Protein sequence (LotjaGi3g1v0334900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIALLGSYCHAPTVMLANFVATPIELSLVVPFLRFGEVISGGPHFPLTSDALKKVFTGQASREVLLSVAHALLGWLVAS PFILGTLYIVLLPCFKFLVQKFSTVPLSPKKPLLHPHSEISLKVRDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 127 | 127 | 7.1E-65 | – | |
| Phobius | 1 | 72 | 72 | - | – | |
| PANTHER | 1 | 127 | 127 | 7.1E-65 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 73 | 95 | 23 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 96 | 127 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0334900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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