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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0343300 |
Transcript ID | LotjaGi3g1v0343300.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-binding family protein; TAIR: AT3G21215.3 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing; TrEMBL-Plants: tr|K7L852|K7L852_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0343300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71997883..72005283) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAAAGGAGGAGTGAGATAGAAGTCGTGGTAGTGGAGTTTAGGACTTTGGTAGATTGGTAAATTGGGGTCGAGGCTTA GGGTTTCATCAGTACGAAACCAAGGGAAGGAGTGTGACTGTGTGAGTGACACAGAGAGATTGAATTCATCCATGGCTGGC AACGGCATCCACCCATACCACCAACAGTGGCCTCCCGCAGCGGCCGTTCCTCCTCCAACCCCACCGCCTGCCGCTCCTCC CACCCTCTCTCCCGACGAGGCACTTTTCTCTCCTTCCATTTTCTTTCTCTTCATAATCAATCATGAATTCTGATTCTGAA TTCTATGTTCATTCTTCGTTGTCCAGGTTCGAACGATATTCATCACTGGCCTCCCCGACGACGTGAAAGAGAGAGAGCTA CAGAACCTGCTTCGATGGTTGCCTGGCTTCGAAGCTTCTCAGCTCAATTTCAAAGCCGATAAACCCATGGGTTTTGCTCT CTTCTCCAGTCCTCACCAAGCAATCGCCGCCAAAGATATTCTTCAGGACATGCTCTTCGATCCTGAAGCCAAGTCCGTCC TCCACACTGAAATGGCCAAGAAAAATCTCTTCATCAAAAGAGGTCACCTTCTTTCACCTGTTTATCATAGTGGGTTATTG TTCAATTGTAGATAGATGTAGAACTTATCTTGATTTTTTTTGTGTGGTAGGAATAGGGGCTGATGCAGCTGCTTTTGATC AGAGTAAACGGTTAAGGACTGCTGGGGATTATACACACACTGGTTATGTAACCCCATCTCCTTATCATCCTCCCCCGCCT CCCGTTTGGGGACCACATGGGTAAGAAATCCACCTTTATCTTCGAAATTACGAAAACTATGGCTGCAATGTAAGGTTTTG AGTCTTAGCAATCACATCGTGACCTTAATTGTGGCCAATTTATTTGCAGTTTTCTACAATTTCAAGGGTTTCAGTGAAAA CCTTGATCACAACATAAGAATATCCTTTTGCGTGCCCCTCCGTATATTTTAATAAGTTCAGTAAATTTGGTTTTTGTTTG TGAAAGTTTATTTGCTTTCGTGGTCCAGATACATGGCTCCACCACCACCTCCGTATGATCCGTATGCAGGCTATCCTGTT GCACCTGTACCGATGCCTGCTCCTGCTCCCATAGCGGCGCCTAGCAGCTATGTTCCAGTTCAGGTGAGATTGGCTTAACA GAATAGATTAGACAGTGCTTCTATTTCAGTTGATTTCCCTTTCTATGATTATGTTATCACTACTTGTCTTGTAGTATTCA GCTCATATTAGTAAAATTTGGATAGGAACAAATTTAAGTATTCTTCTTTCTAAGCTCTATAGTGCTTGCTTATTTAACTT ATCTTTTGGTTAGAGAGAGCCTGATCTCTGCTCTTATTTGTATATTGTTATAATTATGACTTAGTTTTTTAAATTGATGA TGTTACTTATCTGAGACTATTACTGTGCCCATGACATGTCCTTTGGCTTTCACGGACATGAAAGATTTCTAAGATTGTAT TTTAAAGGGAATATTAGAGGAGACATATTTGCCTTTGATTTTGATGGATGTGTTGTTGACTTAATTGTTATATTCTGCTT ATGTTCTGAATTATATTTAGAGATTACTATCACTATTTCTATATGAATGTTAAATGCATTTTTTTATTTGCATTCTATTG GTAAATATACAAAATGAGGGTAAATACTTTGTAGATAAAAGTATTATTAGGTCCCAGCTTTTTATTCCTTAAAGTGATAT TGTGTGTTTTTGGCTTTTGCTAGACATGATTGCTGATATCAAAACTGTATTCTTTTCCTCCATAAAAAGCTTGCTCATAG ATTACCCATGTTAGCCTAAGAGAAGGAACCTTAGGGAACCTCTAAATCTAATCTAGAATTGATAGCCAACCTGTGAAACA AGATGAAGAAGGACTGTATTATTGAAAAATTGAACATGAAGATAGAGAACGAATTCTCTTTTCACCATAAAATTATCAAA AGTACAATGACCTCCCTAATCTGATTTCCCCTTATTTGTCTAACCAAAACCATCTAATTAACTCTTCCCTTCTGTTAGAA ATAATAATATAAAACCGTTCATGTGGCCCTTACCCGACAACTTAAGCTTCTGGGACATTTGGTTATTTGATATGGTATCA GAGCCTCTATGACTAAGCGGTTCAAAGTTCGATCCTTTCCGCCTCAAGTTCTTCTAATAAAAAGTTGAATATCAGCACAT GGTAGATGAGCATGTGCATTGTCCATGCTTCAAGCCCAAACGAGCTCTTGCGTGAGGGAACGTGTTAGAAATAATATTAT AAATCCATTCATGTGGCTTTTGGGATAATTGGTTATTTGATGCCTTCGATCAAACACCCTACGTAACTAATCGGCTAGCT ATTAACAACATAAGACATGTCCTTATGTTGTCGTATTGATACATCTTAACAATACCTTTCTCCTCAAAATCCACCTTACC CTTGAGGTGGGGATTCTTGTTTAAAAGTTATGCGCCATGCCTTTATGGCTTCTTGACCATACCCTTTTGCACACCCAAAC CCTCCTGGCTGCGCGCCCTTCGCTAGGATTGTCACCTTCAATATTTTCTGGACATCGATGAGCTAATGCATAGACCAAGC CACAATGAGAACATCCCTCTTCCCTACATGTCATAAATTCTTGGTAAGGCAATTGCTGCACACTCCCGTTCTGAAATCGA ACTGATGCATTGGCCCTAATTGAGTTTGAGCCTACTGGTTGAGACTAGTGATTTTTGTGTTCGTTCACGTGTTATCTCGC TCTGCAACAGAAAATGACTTGCTACCCTCGTCAGTCGTCACTGTGTTACCCCTAAGATCGATGTGATGCATTGGACCCTG AGACTTTGGTACATCCTTGTGGCTCTTAATTTTTCCTCTACGTCTCGGGCCAACTACATTGCTTTGTTAATATCTCTTGG GTTGTGGGTTTGAACCTGATACCTCACTACCTGTTTATCCTGCCTAATAAGAAACCAATAACTGCTTGTTCGATGCCTAC ATGCCTCCAGTATTTGTGCAAGTGTGCCAACAAGCCTTCATACGCTCTCAAATATCATTCCACCAAGCTTCATTGACACA TGGTGATGATGGTCAATCTTTTGTATACATTTCCCTGACTTTCTTCTCCAAAATGCTGTAACAAAGCTAGGAAGAAAGAA TTCCATGACAAACTCGGGCTTCTCTTGTGCTAGAAACAGAACCAAAGCACCACCACTCCTCCATGCTAATGAAGGTTAAC CTCATTTTCTTATCCTCCTTGACACAATGTACCTAAAGAATTTCTCTGCTTGGACTATCCACCCCAAAGGGTCATTCCTA TTGAAAATGGGTAGTTCGATCCGACCTTCATGGGATAATGGTTCTCTTTGTCACCCTTGTTCTCCATGCGTCTCTGTTTG CTGGCCTTAGTGGCTGTCCTATCACTTTTTTTCTGCATATTGCGTCACATGAGTCAAGGTTGCCTCAGAATAACCCATAC CGCCTTTGGCCATATCTGCAGCTTCTCTCCCCATAGTTTTGTCAATACAAGAAACCGAGTCTTCCAATTGTTAATGCGCG TCTTCACCGATCTGGCAGGTTGGACCAATTGTTAGAAGCCCAAAGAAAGAAGATGAAGAGCGGCAATGTTTTATTGAAAA GTTGAACAAGAATATGGTCTCCCAAAGGGTTTCCCCTTCTCCAAGGATTTCCATTTCACTCAAACTGTTAAAAAAGTACA GAATGCCCTCCCTGTCTGACTTCCCCTTTATCTAGCAAAACCATCTAATTAACTCTCCAGTCTAACAAACTTCTAACCTA ACTAATGGACTAGCATATTGACATAATAATACATGTCCTTATGTTGTCTTATTGATACATCCTAACAAGAATCATTATGT ATGTCTTACATGATGAAAATAAGTCCCTATCTTGCTGCTATGTTTGTGTTGCCTATTTATCTGATGTTTTTGTATTTAAT TTATCAATTCTGTTAGATTGATTTTACTTGTTTACTACAAACTTCCTATACATCCTTATAATTTGTTATAAATGACAAGT TATGTAGTTTGCTTATCTTCTATTATCATGCACAGAACACAAAAGACAACCCTCCCTGCAACACCTTGTTTATTGGAAAC TTGGGAGAGAACATTAACGAGGAAGAAGTGAAGGGCCTTTTCAGTGTGTAAGTACATCTTATCCGTAGACCCTGGTTCTT ATGTTCAGTTTATGTAGTATTTTCTTCGCAGTCTCAGGTATAGGAATAATATGTTAAACTTTGTGATGCAGACAACCTGG CTTTAAGCAAATGAAGATTTTAAGACAGGAGAGGCATACGGTTTGCTTCATTGAATTTGAAGTTAGTAACCTTTTATAAT ATATAAGGCTTTTATAGTCCAATAGATTTTTTTCTGATGTATTATGTTTTTGGTTAATACCTGTTTACATTGTTGTTAAT ATCACATAATTCATGCTTTTAATAGCAACGTTTGATGCGATCCTGCAAACTGGGGATTCTTATCATGCATGAATCACAAA TGATTTGGAATCATTCAATATATTCTTTAATTAGTGTTGTCCATATCATCAATGTGAATCACACAATTAAACGATTTATT AATTTTTTTTTCTTGCCTTTTTTTTACCATTTCTGGTCAACGAAATTAAGAAGTTCAGTAAGCTTAAATTGTTAATGAAA TGAAACTGATGGAGGCCATACTAAATGTACTCTATTTAATGGTTCCGTTCTGTTGTCAACTCTTCTGAAACATGGACATG ACACTGTCATTTGCTCATTTTGGCCCTTCACTCTGTTACTTGCTCACTCTTTGCATACCTGATTTGGACCTATTTTTGTT GGCTTATGACATGGCATATCTTTATTCTTCGCAAGGCTTGTAGAGTTTTAGTCAAGTTGTTTTCTCTATTCCTGATTTGG AGTTTATATTAAGCACTATTACATTATTTATATGATATATTTTAAGCATTAATACCTCATTTATAGGATATATATTAAGC ATTAATACCTCATTTATATGAAATATTTTAGGCCATTTTTCGCCATGCTTTACTATTTCCAAAATTAGTATTACAATTCA TTGTTTGAGTTGGAAAATGACAATCTTCTCTTATGTTTTCCTGTAAAGTTTCCTCAGTCTGATATTTTAATAAACTATTG CAGGATGTGAATAGTGCTGCCAATGTGCACCATACTCTGCAGGGTGCCGTTATTCCAAGTTCTGGTTCAGTTGGCATGCG GATACAATATCCTTTTTTGTATTTTAAGAAACTGGATGTTACTTTCCTGATTTAACCCCCTTACATGCCCTCACTCTAAA TTTGACTGAGCATTTGGTTGTAGCCTTGTAGGACTCTTCATGGGAATTTTTTGCTTTAAATTCTTTCTTTGGTGGCGAAT TACCATGCATGTTTTCTTTTGCCTTCACTGTACTGTGCATCAATGATACTAGAACCTTGGGTTTCTTTGAATTTTTTTCA ATGGGGTTTCCTGCCATTTTTAACTGTTTTTCACACATATCCAACTATGTAATCTGATATGTACAGAGCTGCTAAATGTG TTAGTACTTAGGTAAAAACTACTTTGTAAGTTCATGGCTCTTGCTTCATATTTCTGGACTTGGTTATTTATGCTACTCAC TCGTCTGTCTGCGCATTCAAAAAGACACATACTAATTCAATTTGGCATAAAACTGCTAGTGATTTGTCCATTTTGTTATG TGCTTGGAATTTTGTGTGCTTTTCTTGACTTCTTAGTAGATATTCGAAAAACCCATTTGGAAAAAGGAAAGATGGCAACA TCATGCTTGCTGTTCCAAATGCCAATGGAGCTCCACCAACAATGGCTTATCAGTAGCTTGAAGGGGATGTACTCTGTTCT TTATGCTCCGACAAGTATTACATGATAGGATGCATCTTGCAGCTGTTACATGCATCCATTGATTATGAAGTCATCGCCAT AAGCATCCGCCATTAGCATCCCTGCTCATGTGAATGATTGCACTGTGGCATCATATATACATAATACATTTGGCAATGTT ACACTAATTGGACATGCATTTCTTGGCAGCATATGTTGGTTCCTAGATTACTTCTGTAGTTGTTTAGATGATGTTATTAC CTTGTAGAACTGATGCATGGGTCTAAATTTTGTTTGAATTGTGTGCTTAATGGTCATTAACTCATTATACTCTGTGTACA TTGGCATTAGGAATGCTTATCCAAACAGGCATTATCTGTAGCCAATGCCCCAACTTTAGGCTCATTTATTGCTTACTTGA CATGACATCTTATGGTGACGCTTGCTTTGATTTCATGGCACTAACTTGACTAGGATCTGGAGAAATAAGGATATCACACC AATGGTCATGCTGCCAGCCTTACCACTATCATTAACATTGTCATTACACCACATTTTTAGCTCCATCCCTCATTTGAGTA CTTGGCTGCACTTTAGATGAAGTATGAAGTTATAATTGTTGATTAGAAAATTAATGGTTAAAATTATGTAACATAGATGC CGTGTATAACAAATTAAGAAGTTTTTACAATTCATTGTTATTTTCTAATCAAAGTTTATAACTCTATTTTTGTCTTCTAA AGTACACTCCCTTATTTTAGAGGCGGTCAAACTTTTAACAGACCCCTGCCATTCATGACTCCATTTGATCAGAGCATTGA TGTTGATGCTTTGAAATTGAAGCTATTCAAAGATATTTAAAGGGATCTCGGGAGTTATATGTTGTCTGATTTATACAGGA TTTCAATACGACAAAGCTTCTTTTCCTAATGGGAGGACCATTACTGCTGCTGCTATATTTTTGCAGGTAAGTTTGGTTGC TTGGGTAAACTACTATCAGATCGGGTTGGAAATATTGTTTATCAAGCAAAGCAACTTTGAATTATAGGCGCCCTATGAGT TTCTCAGTAAACCGCCGACTTTATGATTGACTTGTCAATTTTGTGCAAGAATCACAATTTACTATGAATGCAGAGGTTTT ATTTATGTAGCAGATGTGACTGGTATAAGTCAAGAATAATCCAGATAATTTTAAGAGTGATGGTGGGATGAACGAGTTTC AATATTTGAACATTTCGCTGTTAATCTTTAGCTCATACTCATGTTAAGAATGAGTTTTTCGTGCCGAGTAAAACTTCATA TCTAGATTCTGACACTTCAGGCATTAACTGTCTGGCTTGATTTGAGTAATAAATTCTGACATGTTATAGGCATAGCTGAG TGGATTGAATTCTTAGCTTTTTGCTCTACCTTTGAACTGTGTTTCCTGGTATAACTGATTATACCGAGATGCTATTAACA TTCGTCCCCTGTATGGTTGTTGTTGTGGTAATCTAATTTCG
CDS sequence (LotjaGi3g1v0343300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGCAACGGCATCCACCCATACCACCAACAGTGGCCTCCCGCAGCGGCCGTTCCTCCTCCAACCCCACCGCCTGC CGCTCCTCCCACCCTCTCTCCCGACGAGGTTCGAACGATATTCATCACTGGCCTCCCCGACGACGTGAAAGAGAGAGAGC TACAGAACCTGCTTCGATGGTTGCCTGGCTTCGAAGCTTCTCAGCTCAATTTCAAAGCCGATAAACCCATGGGTTTTGCT CTCTTCTCCAGTCCTCACCAAGCAATCGCCGCCAAAGATATTCTTCAGGACATGCTCTTCGATCCTGAAGCCAAGTCCGT CCTCCACACTGAAATGGCCAAGAAAAATCTCTTCATCAAAAGAGGAATAGGGGCTGATGCAGCTGCTTTTGATCAGAGTA AACGGTTAAGGACTGCTGGGGATTATACACACACTGGTTATGTAACCCCATCTCCTTATCATCCTCCCCCGCCTCCCGTT TGGGGACCACATGGATACATGGCTCCACCACCACCTCCGTATGATCCGTATGCAGGCTATCCTGTTGCACCTGTACCGAT GCCTGCTCCTGCTCCCATAGCGGCGCCTAGCAGCTATGTTCCAGTTCAGAACACAAAAGACAACCCTCCCTGCAACACCT TGTTTATTGGAAACTTGGGAGAGAACATTAACGAGGAAGAAGTGAAGGGCCTTTTCAGTGTACAACCTGGCTTTAAGCAA ATGAAGATTTTAAGACAGGAGAGGCATACGGTTTGCTTCATTGAATTTGAAGATGTGAATAGTGCTGCCAATGTGCACCA TACTCTGCAGGGTGCCGTTATTCCAAGTTCTGGTTCAGTTGGCATGCGGATACAATATCCTTTTTTGTATTTTAAGAAAC TGGATGTTACTTTCCTGATTTAA
Protein sequence (LotjaGi3g1v0343300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNGIHPYHQQWPPAAAVPPPTPPPAAPPTLSPDEVRTIFITGLPDDVKERELQNLLRWLPGFEASQLNFKADKPMGFA LFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKRGIGADAAAFDQSKRLRTAGDYTHTGYVTPSPYHPPPPPV WGPHGYMAPPPPPYDPYAGYPVAPVPMPAPAPIAAPSSYVPVQNTKDNPPCNTLFIGNLGENINEEEVKGLFSVQPGFKQ MKILRQERHTVCFIEFEDVNSAANVHHTLQGAVIPSSGSVGMRIQYPFLYFKKLDVTFLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 34 | 34 | - | – | |
PANTHER | 1 | 287 | 287 | 7.1E-164 | – | |
PANTHER | 1 | 287 | 287 | 7.1E-164 | – | |
MobiDBLite | 14 | 32 | 19 | - | – | |
Gene3D | 32 | 118 | 87 | 2.3E-17 | ||
SUPERFAMILY | 34 | 274 | 241 | 6.38E-19 | ||
CDD | 38 | 111 | 74 | 5.56731E-34 | – | |
ProSiteProfiles | 38 | 115 | 78 | 8.603 | ||
SMART | 39 | 109 | 71 | 0.034 | ||
Gene3D | 199 | 287 | 89 | 3.0E-20 | ||
CDD | 210 | 287 | 78 | 3.76746E-42 | – | |
ProSiteProfiles | 212 | 286 | 75 | 10.343 | ||
SMART | 213 | 285 | 73 | 2.4E-7 | ||
Pfam | 214 | 275 | 62 | 1.6E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0343300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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