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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0346000 |
| Transcript ID | LotjaGi3g1v0346000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-specific protease family C19 protein; TAIR: AT1G16860.1 Ubiquitin-specific protease family C19-related protein; Swiss-Prot: sp|Q9FZ45|Y1686_ARATH Uncharacterized membrane protein At1g16860; TrEMBL-Plants: tr|I3SRY0|I3SRY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0346000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72360157..72363984) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCTCTAGAATCCCATCTCATCAGCTTAGCAATGGCCTTTATGTATCAGGGCGGCCTGAGCAGCCCAAAGAAAGGAC TCCAACGATGACCTCAACAGCCGTGCCATATACTGGCGGAGATATAAAAAGGTCTGGCGAATTGGGGAAAATGTTTGATA TTCCTACTGATGGCTCTAAATCTAGGAAATCTGGACCCTTAACAGGTGCTCCTTCACGGACAGGATCTTTTGGAGGAGCT GGTTCACATTCTGGACCAATCCAGCCGAATGCTGCTGCTCGGGCTGCCTATACTACTTCAGGTCCCATGACTTCTGGTGG TATGCCAGGTTCGACTTCAACAAAGAAATCAAATTCTGGACCACTGAATAAACATGGAGAACCTCTTAAAAAGTCTTCTG GTCCTCAGTCTGGTGGAGTAACGCGTCAAAATTCTGGACCTCTTGCTCCTATTCTTCCTACAACTGGTCTCATTACATCT GGGCCAATCTCATCTGGCCCGTTAAACTCTTCTGGGGCCCCTCGGAAAGTGTCTGGTCCTTTGGAAACAACGGGTTCAAT GAAGCTGCAAGGTTCTGCTGCTGTTCACAATCAAGCTGTCACTGTTCTTAGTCAGGATAATGAGTATTCCTTCAGAAGGA ATTTCCCAAAGGCGATGTTGTGGTTATTAATTCTGCTTTTTGTAATGGGTTTCATTGCTGGTGGTTTTATTCTTGGAGCA GTGCACAATGCCATTCTCCTTGTTGTGGTCGTGGTTCTGTTTGGCCTTGTTGCTGCGTCTTTCACATGGAATACTTATTG GGGAAGAAGAGCTATTATGGGCTTCATTACTCATTATCCAGACTCTGAGCTTAGAACTGCAAAAAATGGGCAATTTGTGA AGGTCTCAGGGGTATGTTTAGCTTCACTCTGCCTAACTTATTCCCTATTCTTGAAAAGTTCATCTTCTCTTCTTGTGTTT ATATTTTCTATGTTAAATAATAAATCATACTGCACTAATTTCTAATGTTTATCTTCTTTACATGTCTTTACGTCACTTTG ATCTTGCTTTTAATCATAAATTGTTCTTCACCTGCTTTAGAAGTTGTTCACGTAGTGAAATCAAGAGACTAAGCTAGGTC AAACTGTGTCCCTAACTCAGCCCTAGAACACAAAAATGAACATGTGTCTATGCCTCACTCCCTTCTATTAATATTAATAT TTATTACATCATTAAATCAATACCAAATCACACCTCTTTTAAGCTAGGTCAAACTGTGTCCCTAACTCAGCCCTAGAACA CAAAAATGAACATGTGTCTATGCCTCACTCCCTTCTATTAATATTAATATTTATTACATCATTAAATCAATACCAAATCA CACCTCTTTTAAGCTAGGTCAAACTGTGTCCCTAACTCAGCCCTAGAACACAAAAATGAACATGTGTCTATGCCTCACTC CCTTCTATTAATATCAATATTTATTACATCATTAAATCAATACCAAATCACACCTCTTTTATGTGTTGGCGCGAATCATC ACCATAACTATCCCTTCCGTAATTTCCGAGTTGCCTCGTAAGCATGGTCAGCCGGTCATTAATGAAGGAGCTGATATGTC CCCTGAATCGTGGGATTATAAGAATGTGCGGAAACTTGGTTGGCCAAATCTACGCATGTAACTAAGTCGGTCCCCATGTA GGAAGTAGGAACAAATGTATTTTTCTTGTCTTATAATTTGCAGAAGGTTTTCTAGGATGTCATTTTTTAATTAACATGGT GGAAGGATGGAAAATCTACAAGCATGTTTGACAGTCAAACCTAATTTTTGTCAATTTTAAGAAATTATATGATTGCTACG CTTGGCAACATGATACTCCTAGTAAATAGCCTTAACTGTATGAGTTATCTAAACTGGTACAGCTAGAATATGGACTAGAT ACTTCCACTAGTGTATGACTTCAGTATGGTTTAGATGAATGTGACTATATTTAATATTGAAAGTTTATCTTTGTAATTTG TTTCAAGACATGACATGATTGCAAATAAAAAAAATGAAAATAAAAGGAAAATTTATTATGAATGAATGGAAAACCTTTAT TTTTTCCAGCAGTTTGAAATAATGTTATTTACATTATATAAGCTCTTGGATGATTCATAGATGAGTGCTTTTTTTTTCAT GTACCTTTTTTGCATGGTCTACAGCCATTTGTCTTATCAGTATCATTACTATACTTCACCCATGTCTTATTTTGATATCA GTGCTTCAAAAAGCAAGATTAAGCTTGCACTTGATTGGGTTTCTTGTACATATCTTTTCTATAACTACATCACAATGATC AAATATGTTTTGTTGTGATATATGAAGGTTGTTACCTGCGGTAATGTGCCTCTGGAGTCATCTTTCCAGAAAATCCCCAG ATGTGTATACACGTCAACAAGTTTATATGAATATCGTGGGTGGGACTCAAAAGCTGCCAATCCTACACACCGTCAATTTA CATGGGGCCTTAGATATTTGGAAGTGAGTTACTAAGTTTTATCTGGGTTGGTTATGATGGAATTTAAATACTTTACTCTG ATGTCTTTTGTACAATTCTTTACTTTTATTCAGGGCCCGAGGGGCACGGCAGTGGATAACATGTTTCTTCTTCTAATAAA TTTTTTAGTATTGTTTTGACTTTTGAGTTAATGGCACTATCATGCTTGGGGGGAAGGAAAGTCATTCACTATGGTGGTGT TCTCTCCCTTATGAATGATTCTAATAACCTTTGTACTCATCTTGATTAACATTTTGTTTCCTGAAAAAAGGTGGAATTCA GATGGGTGCCCAACCCTTAAACTTGTCACATTGTGTTGAGACCTAGGATGTTTATTGTCAAGCTTTTTCATGGCACTCGA GGTTATATTGACCTATTTATGCTTTCGTATGTGGTTGCCTGACATCTGTACATTTGTATTTTCTTGATTGGTTTTTTGAA CCATTTTTTATTGTTATATACTGCTTAATGAACTTGCTATGTCTACACGAGTCTGCTTTTTGGAACTGTTATTTCTTCTT TGATTTTGTTCTTTTCGGGTTAAAGGGACTGCTAATTCTATTGGCAACATTACTTTTCACGCGATTGACTGGAATATATG CTATGTGACAGAGGCGTCTGGTTGACTTTTACATCTCGGATTTCCAGTCCGGTTTAAGGGCATTGGTTAAGACTGGGCAT GGAGCAAGAGTGACCCCTTACGTCGACGACTCTGTTCTCATCAGTGTAAATCCAACCAAAGAAGAGTTGTCACCAGAGTT CCTCCGGTGGTTGGGGGAGAGAAATCTATCAAGTGATGACCGCACCATGCGGTTGGAAGAAGGGTAAAAGTTCTCTTTTA TGTTTCCCTGCTTTTTTATCTTTTTTGAATATAATAAACTCATTTGTCTCTGTTTAGGGGTTAATCCCAAATGGAGAAGT TTGAATTAAATCTGTATACGTGAGTGGTTCCAATTTTTTAACCTGTTGATTTTATTTAGCAATGTACTAAACTGATTATT ACAGGTTTTTAGAACTAGGGTTGTCATTTTCATCAAGATTTCCACACTTCTATGTGATGCCTAGTTTTGGTTCAAGAGAG ATAACATAACATTGTGAAACTTTTTTTCTGGTCAGGTACATTAAAGAAGGAAGCACAGTAAGTGTAATGGGGGTTGTTCA GAGGAATGAGAATGTCCTTATGATTGTCCCTCCGCCAGAGCCTATCACTATGGGTTGCCAGTGGACCAAATGTATCTTTC CAGCTAGCCTTGAGGGTATAGTTTTACGATGCGAGGACATGTCGAAGAATGATGTGATACCGGTTTAA
CDS sequence (LotjaGi3g1v0346000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTAGAATCCCATCTCATCAGCTTAGCAATGGCCTTTATGTATCAGGGCGGCCTGAGCAGCCCAAAGAAAGGAC TCCAACGATGACCTCAACAGCCGTGCCATATACTGGCGGAGATATAAAAAGGTCTGGCGAATTGGGGAAAATGTTTGATA TTCCTACTGATGGCTCTAAATCTAGGAAATCTGGACCCTTAACAGGTGCTCCTTCACGGACAGGATCTTTTGGAGGAGCT GGTTCACATTCTGGACCAATCCAGCCGAATGCTGCTGCTCGGGCTGCCTATACTACTTCAGGTCCCATGACTTCTGGTGG TATGCCAGGTTCGACTTCAACAAAGAAATCAAATTCTGGACCACTGAATAAACATGGAGAACCTCTTAAAAAGTCTTCTG GTCCTCAGTCTGGTGGAGTAACGCGTCAAAATTCTGGACCTCTTGCTCCTATTCTTCCTACAACTGGTCTCATTACATCT GGGCCAATCTCATCTGGCCCGTTAAACTCTTCTGGGGCCCCTCGGAAAGTGTCTGGTCCTTTGGAAACAACGGGTTCAAT GAAGCTGCAAGGTTCTGCTGCTGTTCACAATCAAGCTGTCACTGTTCTTAGTCAGGATAATGAGTATTCCTTCAGAAGGA ATTTCCCAAAGGCGATGTTGTGGTTATTAATTCTGCTTTTTGTAATGGGTTTCATTGCTGGTGGTTTTATTCTTGGAGCA GTGCACAATGCCATTCTCCTTGTTGTGGTCGTGGTTCTGTTTGGCCTTGTTGCTGCGTCTTTCACATGGAATACTTATTG GGGAAGAAGAGCTATTATGGGCTTCATTACTCATTATCCAGACTCTGAGCTTAGAACTGCAAAAAATGGGCAATTTGTGA AGGTCTCAGGGGTTGTTACCTGCGGTAATGTGCCTCTGGAGTCATCTTTCCAGAAAATCCCCAGATGTGTATACACGTCA ACAAGTTTATATGAATATCGTGGGTGGGACTCAAAAGCTGCCAATCCTACACACCGTCAATTTACATGGGGCCTTAGATA TTTGGAAAGGCGTCTGGTTGACTTTTACATCTCGGATTTCCAGTCCGGTTTAAGGGCATTGGTTAAGACTGGGCATGGAG CAAGAGTGACCCCTTACGTCGACGACTCTGTTCTCATCAGTGTAAATCCAACCAAAGAAGAGTTGTCACCAGAGTTCCTC CGGTGGTTGGGGGAGAGAAATCTATCAAGTGATGACCGCACCATGCGGTTGGAAGAAGGGTACATTAAAGAAGGAAGCAC AGTAAGTGTAATGGGGGTTGTTCAGAGGAATGAGAATGTCCTTATGATTGTCCCTCCGCCAGAGCCTATCACTATGGGTT GCCAGTGGACCAAATGTATCTTTCCAGCTAGCCTTGAGGGTATAGTTTTACGATGCGAGGACATGTCGAAGAATGATGTG ATACCGGTTTAA
Protein sequence (LotjaGi3g1v0346000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRIPSHQLSNGLYVSGRPEQPKERTPTMTSTAVPYTGGDIKRSGELGKMFDIPTDGSKSRKSGPLTGAPSRTGSFGGA GSHSGPIQPNAAARAAYTTSGPMTSGGMPGSTSTKKSNSGPLNKHGEPLKKSSGPQSGGVTRQNSGPLAPILPTTGLITS GPISSGPLNSSGAPRKVSGPLETTGSMKLQGSAAVHNQAVTVLSQDNEYSFRRNFPKAMLWLLILLFVMGFIAGGFILGA VHNAILLVVVVVLFGLVAASFTWNTYWGRRAIMGFITHYPDSELRTAKNGQFVKVSGVVTCGNVPLESSFQKIPRCVYTS TSLYEYRGWDSKAANPTHRQFTWGLRYLERRLVDFYISDFQSGLRALVKTGHGARVTPYVDDSVLISVNPTKEELSPEFL RWLGERNLSSDDRTMRLEEGYIKEGSTVSVMGVVQRNENVLMIVPPPEPITMGCQWTKCIFPASLEGIVLRCEDMSKNDV IPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 483 | 483 | 1.6E-293 | ||
| MobiDBLite | 1 | 16 | 16 | - | – | |
| PANTHER | 1 | 483 | 483 | 1.6E-293 | – | |
| Phobius | 1 | 217 | 217 | - | – | |
| MobiDBLite | 1 | 184 | 184 | - | – | |
| MobiDBLite | 24 | 38 | 15 | - | – | |
| MobiDBLite | 61 | 83 | 23 | - | – | |
| MobiDBLite | 93 | 121 | 29 | - | – | |
| MobiDBLite | 134 | 150 | 17 | - | – | |
| MobiDBLite | 157 | 172 | 16 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 218 | 238 | 21 | - | – | |
| Phobius | 239 | 243 | 5 | - | – | |
| Phobius | 244 | 263 | 20 | - | – | |
| TMHMM | 245 | 267 | 23 | - | – | |
| Phobius | 264 | 483 | 220 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0346000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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