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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0348900 |
| Transcript ID | LotjaGi3g1v0348900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Low PSII Accumulation 3; TAIR: AT1G73060.1 Low PSII Accumulation 3; Swiss-Prot: sp|Q8H0W0|LPA3_ARATH Protein LOW PSII ACCUMULATION 3, chloroplastic; TrEMBL-Plants: tr|I1KVM9|I1KVM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0348900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72679954..72685524) extracted from Lotus japonicus Gifu genome v1.2.
CCTATCCATCCTTCTCTTTGTAGTGCTTGTTGGTGGTGTGAGTGAGACTGTGAGTGCCACAGAAACACGATGGTGTTGTC CATGGCCATTTCATCTCTACCTCACAACTCCACCTTTCTCCACCCACTCGCGCAGTTTCACTCTCCATCTCCATCTTCCT CTCAAACTCTCAGAAACCTCCCATTCAGACTCACAACCAGAATCCAAAGCGTTGGTGTTGGAAGAGAAGCTGCATCCTCA CAACCAGGGTCAGGTCCTGATCCCAAGGCCGGTGTTTCCCTTTACAAACCCAAATCCTATGAAGTTCTCGTCACTGATGC TGCCAAGTCCCTCGCTCTTGCTCTTCAAGATGGAACACTTCGCCTCGAGATTGATTTCCCGTATATACTACTCACTCGCT CTCAATTCATGTGGAATAGCTAGGATTTAGTTGTAGCTTTCATGGGGTGCCATTCTTTTACTGATTTTGTTCCCTTGGTT TTGTCTTTAGGCCTTTGCCCAGTAGCATATCTTCATATAAGGTACTATTCTTTGATCTCAAGTTACTAATTATTGTCAAT TTTGCTCATTCATTGCATGTAGGCTTGTTTCCAGAGAGTGTGCTTGTTAGAGAAATAATATAAAATCATTCATGTGGCAC TTACCTAACAATTTAAGCTTTTGGGATAATTGGTTGCATGACATGGTATCAGAAAATCTATGACCATGCAGTTCAGAGTT CGATCCTTGCCGCCCCCAATTCTTCAAATAATATAAAATCATTCATGTGGACTTATCCAACAACTTAAGCTTTTGGGATA ATTGGTTGCTTGGCAGTACTAACTACTAATTCCCAAGTTAATAGGCTCACATTTTCAAATGATTGACAATCTGGTCGCGC TAACTACTAATTTCCAAGTTAGTAGGCTAAATTTAACATTTTCAAATGATTGATAATCTGGTCGCGCGTGGTGTTAGTAT TGACAGACAGTGCCTTGCCTTGGTCATGGATCATAACAAATTTTCATTTTAGCTCTTTATACCTCAGTTCATCTTCTGCT GTTTTTTTTTATTAGCAGTATGTTTCAACATATTCGTATGTTTAGTTGTTTTTTATGTCCGAACTATATACTAGGCTAAC TTTGATTTCTTGTTTCAACAAACTGTTCTATTCCATAGTTACTTGACCTTTGTGAGGCATGCTTGTTTGAATATATAGCA CATAATTTTCTCAAATTCCTAAATATTTCAAGGGGTCTTCAGATGATTTCATTGATGCCAACATTCAACTTGCCCTGGCT GTTGTAAGAAAGCTCCAGGAGAAAAAGGAAACCAGAGCTTGCATAGTAAGAAGGCACATTCTTGTTTCCTTCCAAAGCAA GGACTTCTTTTCATGTACAATTTTTTCTCTCTTTCAGAGAAGATATGATTACATTTGTGCCTTATTGTAGGTATTCCCTG ATAAGCCGGAAAAGCGCCGAGCCTCTGAGTTGTTCAAAGCAGCTATGGATTCGGTTATGAAAAATAACTCATTATGAATT TATCCCCCATTTGTTTCAACTTTTTACATGAAAACATCACTTAATTTTGAAAAAAAATCTTTAATTTTTTTAGTGTTTAT TTAAGCTTTTAAGAAAGATCTGAATTTGAGAAAAAATAGCTTCTGCTTAATGTAATCTCTGGAAAATAAATTATATTTTC ACGTAATCCTAAAATCACTTTTTTTTAAAACCTTAAACAAATTTATGACTTCTTTTAAAATTATGCCAGCAAATGATCAC ATCATTGGTAAATTTTGAAGTAGTTAAACTATTTATTTTCATGCTCTATTGGCATTAATTTTGAAGTGCATTTTTGTTTG GCTTCCAGATAGATGGCATTACCATAGGTTCCTTAGATGATGTCCCAGGAGGACCAATGACTTCATTTTTCAGATCTGTT AGGAGCACCCTTGACTTTGACTTTGAAGATGAGAATGAAGGTTAGTTCTGGGGAAAAAATGGCATTAGCGTAGCCATCTA AGTAATATCTTTTTTTCTACTTGGTAGTTACCATGTTCGAAACTTATGGATGGCTATTCATTACATTATTCTTGAGATAT ATATTGGTTAAGCAGTGTTGCTTTGTAAAACATGTGAACGATGAAATAATAATATTTTGACCATCTCGTTTCTTGTAAAT GCAGGCCGTTGGCAGTCTAGTGAGCCTCCATCTCTCTATATATTCATTAATTGCAGTACACGAGAACTTGGTTATATAGA GAAGTATGTGGTATGGTGTCTTTGCCATTAGAACCTTTGATGTGCTTATAAAACTTCATTCCAATCTTGGCTATCTTGGT CAGAATTGTTTATTTTTTGTTCATTGGTGATGAATTATGTGCAATAATATATTATGGCTTGAGTTATTTCATTTGATTTT GGTTCAGCATATCTGCAACATATAGAGTTTAGTTTGGAAGTTTATCCCTCATAGTAGAAAGGTCTTTGATGGTTAAACTT GACCATGGCTCTTGTTTTGATGGCCATTGTTGGCAAAATGTGTGATAGATTCTTAATACCGATAAACAACTATCTGTGAT CGAGTAGGATTTATTATGTACACTGACTTCACCTAGCTGTTTTAGTTTGATGCATATCTTCCATTGTTGCTGCTTGAATC TTGCAGGAAAAATTTGCTCCGTCAACACCAGCACTTCTATTCAATCTTGAACTAGATACATTGCGGTATACATTTTACTC TTTTTGTTTTTGAGTATTCATGCATGCCTAAATCATTAACTACTTTATACACTGGTTACGTTTGAAGAGAATGATTATTG AATTTACAGTGCGGATTTAGGCCTTCTAGGCTTCCCACCCAAAGATTTGCATTACCGCTTTCTTTCTCAATTCACTCCTG TGTTCTACATTCGGATAAGAGATTATTCAAAGGTACTTCTTCTTTATTAAATGTTATCTGGATTATAATTTCTCAATAAT AGGCATTGACTGTTATATTTTTCTGTTTTTAAGACAGTTGCAATAGCGCCTTATATTGTCAACTACAGTGGAGCTGTGTT TCGTCAGTACCCTGGTACAGCTATATATTCATACGTGTATCTGAATATGCGTGTGCGTGTAGACACAATCACACCCCATA TATCTCTATTTTTTCTATCTATTAATATTTGGTCACATATTATTAAAATTGATTATTAAGGTTATTAATTAGTTAATTTC TAAAACGAGAATGGATGCAAAGATGAGAAAGTTGTGGAGAAGTATGATAAACTACTGCATTTTATACCAGTTTTTTAATA TTAATATCAACCCTTACAAGAATGACCATATTTCCAGTTTTTCTAGCAAGTAGCAACATTAGATGATTTTTGATAAAAAG AAGAATGTGATTACATACTTCCCTTTGGAGCCGGGGACAACTTTTCTTATAATAAACCAACTAATTATTTATGGAAGTTG GAGTATGGCCATATTGTTCCTCTTACTTCTCATCAGTCTTTAAATGTCCACACTATTGCTGTGGCCAACTCCATTGAGTT GATTGCTGAATGATCAAAATCTAGCTTTGTGGTCTACTGACTTTTTTGGAACATATTATATGGTTATTAAAGGTGGGATA TCCATATCCACAAAAAAAAAACAGGGTTATCTAATAACAATTTAAAAAAGCCAGGATATCCATTCATACAATGGAGCTGG CACAAAGCATATTTAGCCAGCAGTTGATACCAGATATCCTGTAATTTGTATTTGGTTTTCATATGACTAGTATACCTTTA TTTGCAAACGATATGGGTAATGCACTAAATTTTCTTCCAAAACTGTTCAGGTCCTTGGCAGGTGATGCTTAAACAAGCAG ATGGCTCTTTTGCTTGCATAGCAGAGAGTGCAACCCGCTTCACCCTTGGTGAAGTAAATTCATAAACTTCACCTCATTTG CTTATTAACTGGAAATACTTTCATATTAATCTGTTGACTTATCTAGGCCAAAGAAGAATTGTTAAGAGTCCTGGGACTTC AAGAAGAAGAGGGAAGCTCTCTACAATTTCTTCGAAGAGGCTACAAGGTTTTCTCTCAGTTAGCTTAAGTTTCTGTTAAT TTGCCTACTTGTTTCTTGGGCATTGAGTCTTCAAATTCTTTATAAATCTGTTGCATTATCGTGTAATATTGCAGGCAAGC ACGTGGTGGGAAGAGGATTCTGATTTGGAATTATCTTCTGCATGGCGGAATTGAGTAGTACACTGAAGAGTATAGGTTGT GTCTTTTACAGCATCCTCATGTGGTGGTCATTGAATGCTTGCATACAGTAAAGGAAGGCATTTCCCACTGAACCACCCAA TTTTTATTTTATGTTATTTTAATATTCCTTAATGTAATATTTTCGCCTTCTTTCTTCCCCTTTCAGTTTGAATGGATGTG ATCCATTTTGACAAAGAAATATGAGGACTTAGTAAACTCAATTTGTACATCAGCTTGGAATGCAGCATATTATTTGTTTA ATGAATCTTCTATACAGTTTGTATATTGTTTACAAATAGCATATGTTATGTCATGCTCATCAGTAAATATTTTGAACAAT ATAGACATAACATGACAGCTGTTATAGCAAGCCTCTTGAAGTGCTAGCAACTATATCTAAAATCAAATGTCCATGGAAAT TCAATAGACCTAAAATCATGTAATAGGTCACCTAAACCAAAATTTGTGTCGCCCCATTCAAGGCAACACATTTTTTCAGC TCATATTTTGATTGAAAACAGAGCGTGATCACTCACTCTTTATCAAGAGCACTGAAATCAGGCTCTTGGGGCTTTTGGAT TTTCATCAGGTTCATGGAACTTGAAGAACGAAGCCTATGACCACGAAGCGCATTAGAAGCAAAGCGAGAAGCATAGATGG TTGAGTGAAGTCCAAGCCTGGATGATGAACCTTCACCACGCGGCGAGACCAAGGCCCTTGCAGAATCGTCACTTCCTTCA TAATCATCAGACTCATACAATTCCTCTTCCTCCTTCCGGCGTTGTTCTAAGATTTTCCTCCTGGAATGTCGTCTCCACGC AGCTTGAATGTAGATTGCAGCCCATGTCCTCCACTGCTGCGAGTAGAATCGGAAGGTGTGCTGAACCTGTCTGCTGTGGA TATGCCTGAACTGGGAAGCAACAAACTTCAACTCCTCTGCCTCCAAAGCAAATGCCTCCACCTCATTTATGGCTTTCACT GTCCTTGTAGATGATGGCAAGTTAGCAGCAGATTTTGGGTCCAGTGCCCATGTTAGCAGCTCTTCGCCACAGAAGTCACC TTCCTTCAAAAGTCCTCTGTTGAAAAATCCACTTCTTCCACCATCTGTGGTCACACTCTCTAGATGACCACGAATGATGA ACAACATCTCATTAACTGGATCCCCTTCTCTAACTATGTAAGTTCCCTCTGTATATAAACTTGGTTTCAATCGCTCACAT ATAGCATCAAGCAACCTTTCGTCCATGTTCGCAAAGAGAGGAACCTGAACAGTATTGTTCAAAAAAGCTACTTAGAAAAT GAAGAATTCTGTATAAAACTGTCATGAACCAACTATTGTAAAAGGTTAAAG
CDS sequence (LotjaGi3g1v0348900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTGTCCATGGCCATTTCATCTCTACCTCACAACTCCACCTTTCTCCACCCACTCGCGCAGTTTCACTCTCCATC TCCATCTTCCTCTCAAACTCTCAGAAACCTCCCATTCAGACTCACAACCAGAATCCAAAGCGTTGGTGTTGGAAGAGAAG CTGCATCCTCACAACCAGGGTCAGGTCCTGATCCCAAGGCCGGTGTTTCCCTTTACAAACCCAAATCCTATGAAGTTCTC GTCACTGATGCTGCCAAGTCCCTCGCTCTTGCTCTTCAAGATGGAACACTTCGCCTCGAGATTGATTTCCCGCCTTTGCC CAGTAGCATATCTTCATATAAGGGGTCTTCAGATGATTTCATTGATGCCAACATTCAACTTGCCCTGGCTGTTGTAAGAA AGCTCCAGGAGAAAAAGGAAACCAGAGCTTGCATAGTATTCCCTGATAAGCCGGAAAAGCGCCGAGCCTCTGAGTTGTTC AAAGCAGCTATGGATTCGATAGATGGCATTACCATAGGTTCCTTAGATGATGTCCCAGGAGGACCAATGACTTCATTTTT CAGATCTGTTAGGAGCACCCTTGACTTTGACTTTGAAGATGAGAATGAAGGCCGTTGGCAGTCTAGTGAGCCTCCATCTC TCTATATATTCATTAATTGCAGTACACGAGAACTTGGTTATATAGAGAAGTATGTGGAAAAATTTGCTCCGTCAACACCA GCACTTCTATTCAATCTTGAACTAGATACATTGCGTGCGGATTTAGGCCTTCTAGGCTTCCCACCCAAAGATTTGCATTA CCGCTTTCTTTCTCAATTCACTCCTGTGTTCTACATTCGGATAAGAGATTATTCAAAGACAGTTGCAATAGCGCCTTATA TTGTCAACTACAGTGGAGCTGTGTTTCGTCAGTACCCTGGTCCTTGGCAGGTGATGCTTAAACAAGCAGATGGCTCTTTT GCTTGCATAGCAGAGAGTGCAACCCGCTTCACCCTTGGTGAAGCCAAAGAAGAATTGTTAAGAGTCCTGGGACTTCAAGA AGAAGAGGGAAGCTCTCTACAATTTCTTCGAAGAGGCTACAAGGCAAGCACGTGGTGGGAAGAGGATTCTGATTTGGAAT TATCTTCTGCATGGCGGAATTGA
Protein sequence (LotjaGi3g1v0348900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSMAISSLPHNSTFLHPLAQFHSPSPSSSQTLRNLPFRLTTRIQSVGVGREAASSQPGSGPDPKAGVSLYKPKSYEVL VTDAAKSLALALQDGTLRLEIDFPPLPSSISSYKGSSDDFIDANIQLALAVVRKLQEKKETRACIVFPDKPEKRRASELF KAAMDSIDGITIGSLDDVPGGPMTSFFRSVRSTLDFDFEDENEGRWQSSEPPSLYIFINCSTRELGYIEKYVEKFAPSTP ALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFTPVFYIRIRDYSKTVAIAPYIVNYSGAVFRQYPGPWQVMLKQADGSF ACIAESATRFTLGEAKEELLRVLGLQEEEGSSLQFLRRGYKASTWWEEDSDLELSSAWRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 380 | 358 | 4.4E-186 | – | |
| PANTHER | 23 | 380 | 358 | 4.4E-186 | – | |
| Pfam | 74 | 336 | 263 | 2.7E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0348900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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