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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018962
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.113s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0237929.1
n.a. Domain of Uncharacterized protein function (DUF1995) isoform 1 [Theobroma cacao] gi|508719443|gb|EOY11340.1| chr0 123379721 123381657 +
2 domain predictions
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Lj3g3v1545560.1
n.a. Domain of Uncharacterized protein function [Theobroma cacao] gi|508720714|gb|EOY12611.1| chr3 19824257 19825216 -
2 domain predictions
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Lj3g3v2097070.1
n.a. Low PSII Accumulation 3 isoform 3, partial [Theobroma cacao] gi|508778809|gb|EOY26065.1| chr3 26677133 26681691 -
2 domain predictions
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Lj5g3v1494670.1
n.a. Domain of Uncharacterized protein function (DUF1995) isoform 2, partial [Theobroma cacao] gi|508719444|gb|EOY11341.1| chr5 21674750 21675529 -
2 domain predictions
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Lj5g3v1494670.2
n.a. Domain of Uncharacterized protein function (DUF1995) isoform 2, partial [Theobroma cacao] gi|508719444|gb|EOY11341.1| chr5 21674750 21678156 -
2 domain predictions
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Lj5g3v2133680.1
n.a. Adenylate kinase family protein isoform 1 [Theobroma cacao] gi|508784072|gb|EOY31328.1| chr5 30583804 30591003 +
2 domain predictions
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LotjaGi2g1v0341400.2
n.a. Protein LOW PSII ACCUMULATION 3, chloroplastic; TAIR: AT5G48790.1 LOW PSII ACCUMULATION protein (DUF1995); Swiss-Prot: sp|Q8H0W0|LPA3_ARATH Protein LOW PSII ACCUMULATION 3, chloroplastic; TrEMBL-Plants: tr|G7K855|G7K855_MEDTR Plant/K24G6-12 protein; Found in the gene: LotjaGi2g1v0341400 LjG1.1_chr2 81827377 81846079 +
2 domain predictions
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LotjaGi2g1v0341400.7
n.a. Protein LOW PSII ACCUMULATION 3, chloroplastic; TAIR: AT5G48790.1 LOW PSII ACCUMULATION protein (DUF1995); Swiss-Prot: sp|Q8H0W0|LPA3_ARATH Protein LOW PSII ACCUMULATION 3, chloroplastic; TrEMBL-Plants: tr|G7K855|G7K855_MEDTR Plant/K24G6-12 protein; Found in the gene: LotjaGi2g1v0341400 LjG1.1_chr2 81842327 81845955 +
2 domain predictions
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LotjaGi3g1v0235300.1
n.a. Plant/F3H11-7 protein; TAIR: AT3G20680.1 plant/protein (DUF1995); Swiss-Prot: sp|Q18DY6|DHQS_HALWD 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A1J7IA56|A0A1J7IA56_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0235300 LjG1.1_chr3 37304164 37305189 +
2 domain predictions
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LotjaGi3g1v0348900.1
n.a. Low PSII Accumulation 3; TAIR: AT1G73060.1 Low PSII Accumulation 3; Swiss-Prot: sp|Q8H0W0|LPA3_ARATH Protein LOW PSII ACCUMULATION 3, chloroplastic; TrEMBL-Plants: tr|I1KVM9|I1KVM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0348900 LjG1.1_chr3 72679954 72685524 -
2 domain predictions
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LotjaGi3g1v0348900.2
n.a. Low PSII Accumulation 3; TAIR: AT1G73060.1 Low PSII Accumulation 3; Swiss-Prot: sp|Q8H0W0|LPA3_ARATH Protein LOW PSII ACCUMULATION 3, chloroplastic; TrEMBL-Plants: tr|G7JEG6|G7JEG6_MEDTR Low PSII accumulation protein; Found in the gene: LotjaGi3g1v0348900 LjG1.1_chr3 72681046 72685559 -
2 domain predictions
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LotjaGi5g1v0220700.1
n.a. DUF1995 domain protein; TAIR: AT5G27560.1 DUF1995 domain protein, putative (DUF1995); Swiss-Prot: sp|Q8VYL1|KAD5_ARATH Adenylate kinase 5, chloroplastic; TrEMBL-Plants: tr|I3S552|I3S552_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0220700 LjG1.1_chr5 52705239 52709670 -
2 domain predictions
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LotjaGi5g1v0329000.1
n.a. Adenylate kinase; TAIR: AT5G35170.1 adenylate kinase family protein; Swiss-Prot: sp|Q8VYL1|KAD5_ARATH Adenylate kinase 5, chloroplastic; TrEMBL-Plants: tr|V7B0M9|V7B0M9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0329000 LjG1.1_chr5 64614445 64621814 +
2 domain predictions
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LotjaGi5g1v0329000.2
n.a. Adenylate kinase; TAIR: AT5G35170.1 adenylate kinase family protein; Swiss-Prot: sp|Q8VYL1|KAD5_ARATH Adenylate kinase 5, chloroplastic; TrEMBL-Plants: tr|V7B0M9|V7B0M9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0329000 LjG1.1_chr5 64614677 64621663 +
2 domain predictions
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